Rap1gds1 (Rap1 GTPase-GDP dissociation stimulator 1) - Rat Genome Database

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Gene: Rap1gds1 (Rap1 GTPase-GDP dissociation stimulator 1) Rattus norvegicus
Analyze
Symbol: Rap1gds1
Name: Rap1 GTPase-GDP dissociation stimulator 1
RGD ID: 1308558
Description: Predicted to enable guanyl-nucleotide exchange factor activity. Involved in myosin filament assembly and vascular associated smooth muscle contraction. Predicted to be located in several cellular components, including endoplasmic reticulum; extracellular space; and mitochondrion. Predicted to be active in cytosol. Orthologous to human RAP1GDS1 (Rap1 GTPase-GDP dissociation stimulator 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC310909; RAP1, GTP-GDP dissociation stimulator 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: Rap1gds1Tn(sb-T2/Bart3)2.251Mcwi
Genetic Models: F344-Rap1gds1Tn(sb-T2/Bart3)2.251Mcwi
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,173,713 - 230,318,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2230,173,713 - 230,318,538 (-)EnsemblGRCr8
mRatBN7.22227,500,366 - 227,645,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,242,317 - 235,354,991 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,142,077 - 233,254,755 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,006,680 - 228,119,360 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,258,550 - 244,370,983 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)Ensemblrn6Rnor6.0
Rnor_5.02262,787,595 - 262,899,803 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,522,381 - 236,638,692 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,646,515 - 219,757,722 (-)NCBICelera
RGSC_v3.12236,510,838 - 236,657,572 (-)NCBI
Cytogenetic Map2q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA,ISO)
endoplasmic reticulum  (IEA,ISO)
extracellular space  (IEA,ISO)
mitochondrion  (IEA,ISO)
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. Identification and characterization of the unique guanine nucleotide exchange factor, SmgGDS, in vascular smooth muscle cells. Thill R, etal., J Cell Biochem. 2008 Aug 1;104(5):1760-70.
Additional References at PubMed
PMID:16954223   PMID:19056867   PMID:20190816   PMID:23155002   PMID:24349085  


Genomics

Comparative Map Data
Rap1gds1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82230,173,713 - 230,318,555 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2230,173,713 - 230,318,538 (-)EnsemblGRCr8
mRatBN7.22227,500,366 - 227,645,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2235,242,317 - 235,354,991 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02233,142,077 - 233,254,755 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02228,006,680 - 228,119,360 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02244,258,550 - 244,370,983 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)Ensemblrn6Rnor6.0
Rnor_5.02262,787,595 - 262,899,803 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42236,522,381 - 236,638,692 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2219,646,515 - 219,757,722 (-)NCBICelera
RGSC_v3.12236,510,838 - 236,657,572 (-)NCBI
Cytogenetic Map2q44NCBI
RAP1GDS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38498,261,384 - 98,443,858 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl498,261,243 - 98,443,864 (+)Ensemblhg38GRCh38
GRCh37499,182,535 - 99,365,009 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36499,401,550 - 99,584,035 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34499,539,797 - 99,720,993NCBI
Celera496,477,193 - 96,659,685 (+)NCBICelera
Cytogenetic Map4q23NCBI
HuRef494,951,921 - 95,102,454 (+)NCBIHuRef
CHM1_1499,159,390 - 99,341,882 (+)NCBICHM1_1
T2T-CHM13v2.04101,576,339 - 101,758,825 (+)NCBIT2T-CHM13v2.0
Rap1gds1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393138,631,662 - 138,781,163 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3138,631,663 - 138,780,962 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383138,925,897 - 139,075,228 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3138,925,902 - 139,075,201 (-)Ensemblmm10GRCm38
MGSCv373138,588,870 - 138,738,163 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363138,863,297 - 139,012,457 (-)NCBIMGSCv36mm8
Celera3145,353,564 - 145,478,788 (-)NCBICelera
Cytogenetic Map3H1NCBI
cM Map364.52NCBI
Rap1gds1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554058,573,932 - 8,709,990 (+)Ensembl
ChiLan1.0NW_0049554058,555,117 - 8,708,604 (+)NCBIChiLan1.0ChiLan1.0
RAP1GDS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2396,336,451 - 96,509,923 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1496,614,421 - 96,787,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0490,671,891 - 90,846,501 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14101,336,286 - 101,510,517 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4101,336,286 - 101,510,517 (+)EnsemblpanPan2panpan1.1
RAP1GDS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13220,536,812 - 20,690,433 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3220,534,699 - 20,688,950 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3221,241,083 - 21,401,128 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03220,718,694 - 20,878,364 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3220,718,539 - 20,873,644 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13220,687,721 - 20,847,099 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03220,513,396 - 20,672,839 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03219,224,102 - 19,383,998 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rap1gds1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530121,016,077 - 21,163,344 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936717233,696 - 380,963 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936717233,696 - 380,963 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAP1GDS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8121,866,805 - 122,082,948 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.18121,866,803 - 122,007,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.28131,053,654 - 131,110,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAP1GDS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1746,410,057 - 46,581,866 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl746,410,084 - 46,583,028 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603724,841,556 - 25,014,216 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rap1gds1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475726,393,106 - 26,520,785 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475726,393,116 - 26,520,344 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rap1gds1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1320,061,443 - 20,210,289 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rap1gds1
787 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:495
Count of miRNA genes:243
Interacting mature miRNAs:277
Transcripts:ENSRNOT00000021458
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631563Hcuc3Hepatic copper content QTL 33.87liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)2212145502231732847Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2186850607231850607Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
1359031Bp275Blood pressure QTL 275arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2188565047233565047Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat

Markers in Region
D2Rat246  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82230,247,215 - 230,247,343 (+)Marker Load Pipeline
mRatBN7.22227,573,870 - 227,573,998 (+)MAPPERmRatBN7.2
Rnor_6.02244,332,017 - 244,332,144NCBIRnor6.0
Rnor_5.02262,860,837 - 262,860,964UniSTSRnor5.0
RGSC_v3.42236,595,839 - 236,595,966UniSTSRGSC3.4
Celera2219,719,939 - 219,720,066UniSTS
RGSC_v3.12236,582,578 - 236,582,706RGD
FHH x ACI Map750.0199UniSTS
Cytogenetic Map2q44UniSTS
D7Rat232  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.02262,860,835 - 262,860,964NCBIRnor5.0
Rnor_5.02262,860,836 - 262,860,964NCBIRnor5.0
RGSC_v3.42236,595,838 - 236,595,966RGDRGSC3.4
RGSC_v3.42236,595,839 - 236,595,966UniSTSRGSC3.4
Celera2219,719,939 - 219,720,066UniSTS
RGSC_v3.12236,582,578 - 236,582,706RGD
FHH x ACI Map750.0199RGD
D2Rat364  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82230,247,228 - 230,247,343 (+)Marker Load Pipeline
mRatBN7.22227,573,883 - 227,573,998 (+)MAPPERmRatBN7.2
Rnor_6.02244,332,030 - 244,332,144NCBIRnor6.0
Rnor_5.02262,860,850 - 262,860,964UniSTSRnor5.0
RGSC_v3.42236,595,851 - 236,595,966RGDRGSC3.4
RGSC_v3.42236,595,852 - 236,595,966UniSTSRGSC3.4
Celera2219,719,952 - 219,720,066UniSTS
RGSC_v3.12236,582,591 - 236,582,706RGD
SHRSP x BN Map298.9798UniSTS
SHRSP x BN Map298.9798RGD
Cytogenetic Map2q44UniSTS
RH140023  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,500,517 - 227,500,698 (+)MAPPERmRatBN7.2
Rnor_6.02244,258,701 - 244,258,881NCBIRnor6.0
Rnor_5.02262,787,747 - 262,787,927UniSTSRnor5.0
RGSC_v3.42236,522,532 - 236,522,712UniSTSRGSC3.4
Celera2219,646,666 - 219,646,846UniSTS
RH 3.4 Map21579.6UniSTS
Cytogenetic Map2q44UniSTS
RH143543  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,501,692 - 227,501,823 (+)MAPPERmRatBN7.2
Rnor_6.02244,259,875 - 244,260,005NCBIRnor6.0
Rnor_5.02262,788,921 - 262,789,051UniSTSRnor5.0
RGSC_v3.42236,523,706 - 236,523,836UniSTSRGSC3.4
Celera2219,647,840 - 219,647,970UniSTS
RH 3.4 Map21589.0UniSTS
Cytogenetic Map2q44UniSTS
AW535078  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,561,760 - 227,561,910 (+)MAPPERmRatBN7.2
Rnor_6.02244,319,908 - 244,320,057NCBIRnor6.0
Rnor_5.02262,848,728 - 262,848,877UniSTSRnor5.0
RGSC_v3.42236,583,729 - 236,583,878UniSTSRGSC3.4
Celera2219,707,862 - 219,708,011UniSTS
RH 3.4 Map21588.8UniSTS
Cytogenetic Map2q44UniSTS
RH135334  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr82230,174,343 - 230,174,546 (+)Marker Load Pipeline
mRatBN7.22227,500,996 - 227,501,199 (+)MAPPERmRatBN7.2
Rnor_6.02244,259,180 - 244,259,382NCBIRnor6.0
Rnor_5.02262,788,226 - 262,788,428UniSTSRnor5.0
RGSC_v3.42236,523,011 - 236,523,213UniSTSRGSC3.4
Celera2219,647,145 - 219,647,347UniSTS
RH 3.4 Map21579.8UniSTS
Cytogenetic Map2q44UniSTS


Genetic Models
This gene Rap1gds1 is modified in the following models/strains:
F344-Rap1gds1Tn(sb-T2/Bart3)2.251Mcwi    


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000021458   ⟹   ENSRNOP00000021457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2230,173,713 - 230,318,538 (-)Ensembl
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)Ensembl
Rnor_6.0 Ensembl2244,258,550 - 244,370,983 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000084860   ⟹   ENSRNOP00000071795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2230,173,713 - 230,318,538 (-)Ensembl
mRatBN7.2 Ensembl2227,500,367 - 227,645,169 (-)Ensembl
Rnor_6.0 Ensembl2244,260,069 - 244,335,165 (-)Ensembl
RefSeq Acc Id: NM_001107728   ⟹   NP_001101198
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,538 (-)NCBI
mRatBN7.22227,500,366 - 227,645,200 (-)NCBI
Rnor_6.02244,258,550 - 244,370,983 (-)NCBI
Rnor_5.02262,787,595 - 262,899,803 (-)NCBI
RGSC_v3.42236,522,381 - 236,638,692 (-)RGD
Celera2219,646,515 - 219,757,722 (-)RGD
Sequence:
RefSeq Acc Id: NM_001415062   ⟹   NP_001401991
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,538 (-)NCBI
mRatBN7.22227,500,366 - 227,645,200 (-)NCBI
RefSeq Acc Id: XM_039102469   ⟹   XP_038958397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,554 (-)NCBI
mRatBN7.22227,500,366 - 227,645,213 (-)NCBI
RefSeq Acc Id: XM_039102470   ⟹   XP_038958398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,555 (-)NCBI
mRatBN7.22227,500,366 - 227,645,213 (-)NCBI
RefSeq Acc Id: XM_039102473   ⟹   XP_038958401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,552 (-)NCBI
mRatBN7.22227,500,366 - 227,645,212 (-)NCBI
RefSeq Acc Id: XM_039102477   ⟹   XP_038958405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,206,629 (-)NCBI
mRatBN7.22227,500,366 - 227,533,285 (-)NCBI
RefSeq Acc Id: XM_063281978   ⟹   XP_063138048
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82230,173,713 - 230,318,553 (-)NCBI
RefSeq Acc Id: NP_001101198   ⟸   NM_001107728
- Peptide Label: isoform 2
- UniProtKB: F1M7Y3 (UniProtKB/TrEMBL),   A6HW43 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071795   ⟸   ENSRNOT00000084860
Ensembl Acc Id: ENSRNOP00000021457   ⟸   ENSRNOT00000021458
RefSeq Acc Id: XP_038958397   ⟸   XM_039102469
- Peptide Label: isoform X2
- UniProtKB: A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958398   ⟸   XM_039102470
- Peptide Label: isoform X1
- UniProtKB: A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958401   ⟸   XM_039102473
- Peptide Label: isoform X3
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038958405   ⟸   XM_039102477
- Peptide Label: isoform X5
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001401991   ⟸   NM_001415062
- Peptide Label: isoform 1
- UniProtKB: A0A0G2K1D2 (UniProtKB/TrEMBL),   A6HW44 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063138048   ⟸   XM_063281978
- Peptide Label: isoform X4
- UniProtKB: A6HW43 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K1D2-F1-model_v2 AlphaFold A0A0G2K1D2 1-527 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308558 AgrOrtholog
BioCyc Gene G2FUF-51043 BioCyc
Ensembl Genes ENSRNOG00000015987 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021458 ENTREZGENE
  ENSRNOT00000021458.9 UniProtKB/TrEMBL
  ENSRNOT00000084860 ENTREZGENE
  ENSRNOT00000084860.3 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Armadillo UniProtKB/TrEMBL
  RAP1GDS1 UniProtKB/TrEMBL
KEGG Report rno:310909 UniProtKB/TrEMBL
NCBI Gene 310909 ENTREZGENE
PANTHER PTHR10957 UniProtKB/TrEMBL
Pfam Arm UniProtKB/TrEMBL
PhenoGen Rap1gds1 PhenoGen
PROSITE ARM_REPEAT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015987 RatGTEx
SMART ARM UniProtKB/TrEMBL
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K1D2 ENTREZGENE, UniProtKB/TrEMBL
  A6HW43 ENTREZGENE, UniProtKB/TrEMBL
  A6HW44 ENTREZGENE, UniProtKB/TrEMBL
  F1M7Y3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rap1gds1  RAP1, GTP-GDP dissociation stimulator 1   Rap1gds1_predicted  RAP1, GTP-GDP dissociation stimulator 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rap1gds1_predicted  RAP1, GTP-GDP dissociation stimulator 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED