D2Rat364 Marker Search Result - Rat Genome Database

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Marker: D2Rat364

Symbol: D2Rat364
Previously known as: R0309-B02; oxsts10624; 
RGD ID: 42630
Expected Size: 112 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22227,573,883 - 227,573,998 (+)MAPPERmRatBN7.2
Rnor_6.02244,332,030 - 244,332,144NCBIRnor6.0
Rnor_5.02262,860,850 - 262,860,964UniSTSRnor5.0
RGSC_v3.42236,595,851 - 236,595,966RGDRGSC3.4
RGSC_v3.42236,595,852 - 236,595,966UniSTSRGSC3.4
RGSC_v3.12236,582,591 - 236,582,706RGD
Celera2219,719,952 - 219,720,066UniSTS
SHRSP x BN Map298.9798RGD
SHRSP x BN Map298.9798UniSTS
Cytogenetic Map2q44UniSTS
Is Marker For: Genes:   Rap1gds1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGGTAAGTTCTGGGGTTTGC
Reverse Primer GTCCGTCCCTCCTTACTTCC
 
Template 
CCACAGGTTCCTGTGGTGTTGACCTAGCTGTGTGTGTGCTAGGAACACCTTTGAACCTTTGTAG
ATGCCCATCAGAGCCATTCTGAAGCTTCTCCAGTGTAACATACCCAGTATTGTATGCATTCTTG
GTAAGTTCTGGGGTTTGCACATGTGTGAGAGAGCATGAATGCACACACACACACACACACACAC
ACACACACACACACACGAGAGGGGGGGGAAGTAAGGAGGGACGGACAGTCGCTTGTTTTAGATT
AGTCTAGGGAGTGTGTGGTACCGAGTCTCGAATTCGTAATCATGGTTCATAGCTGTTTCCTGTG
TGAAATTGTTATGCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCC
TGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGNTTTCCAGT
CGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGGAGAGGNGGTTTGCG
TATTGGGCGCAGGGTGGTTTTTCTTTTCACCAGTGAGANGGGCAACAGCTGATTGCCCTCACCG
CTGGCCCTGAGAGAGTTGCAGCAAGCGGTCACGTGGTTTGCCCCAGCAGGCGAAAATCTGTNTG
ATGGTGGTTCGAATCGGCANATCCTATAAATCAAAGATAGCC

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1308558Rap1gds1Rap1 GTPase-GDP dissociation stimulator 12227500366227645213Rat

Nucleotide Sequences
GenBank Nucleotide JH613875.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)278665619249053267Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2149559561249053267Rat
738013Alc15Alcohol consumption QTL 154.10.00022consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)2184165752229165752Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2189599258234599258Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2189599258234599258Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2193452645245889826Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2199341726234244620Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2200990457245990457Rat
2298479Eau5Experimental allergic uveoretinitis QTL 50.0021uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)2202446871237938339Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2211744537249053267Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2211744537249053267Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2211744537249053267Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2211744537249053267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2211744537249053267Rat
2317885Alcrsp28Alcohol response QTL 282.10.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2212828222249053267Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2214226044247136170Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2215377404237938339Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2218414747240841241Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2219753301247136170Rat
9587428Epfw6Epididymal fat weight QTL 67.470.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)2223389739249053267Rat
7411555Bw132Body weight QTL 1320.001body mass (VT:0001259)body weight gain (CMO:0000420)2223389739249053267Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 310909 UniSTS
UniSTS 227498 UniSTS