Megf9 (multiple EGF-like-domains 9) - Rat Genome Database

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Gene: Megf9 (multiple EGF-like-domains 9) Rattus norvegicus
Analyze
Symbol: Megf9
Name: multiple EGF-like-domains 9
RGD ID: 1308330
Description: Predicted to be involved in several processes, including axon guidance; basement membrane assembly; and substrate adhesion-dependent cell spreading. Predicted to be located in basement membrane. Predicted to be part of laminin complex. Orthologous to human MEGF9 (multiple EGF like domains 9); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EGF-like-domain, multiple 5; Egfl5; LOC313270; multiple epidermal growth factor-like domains protein 9
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8589,008,679 - 89,120,731 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl589,008,679 - 89,120,731 (-)EnsemblGRCr8
mRatBN7.2583,993,565 - 84,105,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl583,993,565 - 84,105,622 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx586,384,336 - 86,496,433 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0588,201,662 - 88,313,760 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0588,177,337 - 88,289,435 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0586,586,996 - 86,696,388 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl586,586,996 - 86,696,388 (-)Ensemblrn6Rnor6.0
Rnor_5.0590,674,194 - 90,783,779 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4587,771,841 - 87,884,885 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera582,798,300 - 82,909,288 (-)NCBICelera
RGSC_v3.1587,835,304 - 87,889,914 (-)NCBI
Cytogenetic Map5q31NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16981854  


Genomics

Comparative Map Data
Megf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8589,008,679 - 89,120,731 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl589,008,679 - 89,120,731 (-)EnsemblGRCr8
mRatBN7.2583,993,565 - 84,105,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl583,993,565 - 84,105,622 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx586,384,336 - 86,496,433 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0588,201,662 - 88,313,760 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0588,177,337 - 88,289,435 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0586,586,996 - 86,696,388 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl586,586,996 - 86,696,388 (-)Ensemblrn6Rnor6.0
Rnor_5.0590,674,194 - 90,783,779 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4587,771,841 - 87,884,885 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera582,798,300 - 82,909,288 (-)NCBICelera
RGSC_v3.1587,835,304 - 87,889,914 (-)NCBI
Cytogenetic Map5q31NCBI
MEGF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389120,600,811 - 120,714,470 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9120,600,811 - 120,714,470 (-)Ensemblhg38GRCh38
GRCh379123,363,089 - 123,476,748 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369122,402,912 - 122,516,433 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349120,442,644 - 120,501,329NCBI
Celera994,011,363 - 94,124,882 (-)NCBICelera
Cytogenetic Map9q33.2NCBI
HuRef992,980,942 - 93,106,705 (-)NCBIHuRef
CHM1_19123,510,375 - 123,623,915 (-)NCBICHM1_1
T2T-CHM13v2.09132,795,136 - 132,910,624 (-)NCBIT2T-CHM13v2.0
Megf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39470,350,164 - 70,453,165 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl470,345,302 - 70,453,232 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38470,431,927 - 70,534,928 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl470,427,065 - 70,534,995 (-)Ensemblmm10GRCm38
MGSCv37470,092,961 - 70,195,962 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36469,918,288 - 70,021,289 (-)NCBIMGSCv36mm8
Celera469,026,247 - 69,125,899 (-)NCBICelera
Cytogenetic Map4C2NCBI
cM Map435.92NCBI
Megf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554197,303,346 - 7,395,493 (+)Ensembl
ChiLan1.0NW_0049554197,303,248 - 7,399,796 (+)NCBIChiLan1.0ChiLan1.0
MEGF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21118,631,309 - 18,745,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1918,633,656 - 18,747,648 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0991,728,219 - 91,842,056 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19120,076,181 - 120,189,364 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9120,076,181 - 120,189,364 (-)EnsemblpanPan2panpan1.1
MEGF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11173,716,395 - 73,793,072 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1172,129,733 - 72,206,838 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01174,849,424 - 74,927,568 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11173,361,703 - 73,440,223 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01173,393,710 - 73,470,845 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01174,130,763 - 74,208,829 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Megf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947189,327,446 - 189,428,986 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364879,095,979 - 9,203,768 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MEGF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1260,661,420 - 260,756,866 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11260,662,355 - 260,756,930 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21292,733,710 - 292,827,868 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MEGF9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11218,866,228 - 18,976,522 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1218,866,185 - 18,974,909 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603524,028,779 - 24,146,286 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Megf9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476014,629,985 - 14,723,546 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476014,629,989 - 14,721,655 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Megf9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1182,751,170 - 82,852,672 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Megf9
866 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:173
Count of miRNA genes:120
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000007812
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)584630798129630798Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)584630798129630798Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584630798129630798Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
1600362Mcs19Mammary carcinoma susceptibility QTL 192.5mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)582032155127032155Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000007812   ⟹   ENSRNOP00000007812
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl589,008,679 - 89,120,731 (-)Ensembl
mRatBN7.2 Ensembl583,993,565 - 84,105,622 (-)Ensembl
Rnor_6.0 Ensembl586,586,996 - 86,696,388 (-)Ensembl
RefSeq Acc Id: NM_001107940   ⟹   NP_001101410
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8589,008,679 - 89,120,731 (-)NCBI
mRatBN7.2583,993,565 - 84,105,622 (-)NCBI
Rnor_6.0586,586,996 - 86,696,388 (-)NCBI
Rnor_5.0590,674,194 - 90,783,779 (-)NCBI
RGSC_v3.4587,771,841 - 87,884,885 (-)RGD
Celera582,798,300 - 82,909,288 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001101410 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM10500 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007812
  ENSRNOP00000007812.4
RefSeq Acc Id: NP_001101410   ⟸   NM_001107940
- Peptide Label: precursor
- UniProtKB: D4A3L3 (UniProtKB/TrEMBL),   A6J807 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007812   ⟸   ENSRNOT00000007812
Protein Domains
Laminin EGF-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A3L3-F1-model_v2 AlphaFold D4A3L3 1-599 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693810
Promoter ID:EPDNEW_R4335
Type:multiple initiation site
Name:Megf9_1
Description:multiple EGF-like-domains 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0586,696,315 - 86,696,375EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308330 AgrOrtholog
BioCyc Gene G2FUF-41004 BioCyc
Ensembl Genes ENSRNOG00000005932 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007812 ENTREZGENE
  ENSRNOT00000007812.6 UniProtKB/TrEMBL
Gene3D-CATH Laminin UniProtKB/TrEMBL
InterPro EGF-like_dom UniProtKB/TrEMBL
  EGF_laminin UniProtKB/TrEMBL
  Growth_fac_rcpt_N_dom UniProtKB/TrEMBL
  Laminin/Netrin_ECM UniProtKB/TrEMBL
  LMN_ATRN_NET-like_EGF UniProtKB/TrEMBL
KEGG Report rno:313270 UniProtKB/TrEMBL
NCBI Gene 313270 ENTREZGENE
PANTHER LAMININ SUBUNIT ALPHA 5 UniProtKB/TrEMBL
  NETRIN/LAMININ-RELATED UniProtKB/TrEMBL
Pfam EGF_LMN_ATRN UniProtKB/TrEMBL
  Laminin_EGF UniProtKB/TrEMBL
PhenoGen Megf9 PhenoGen
PRINTS EGFLAMININ UniProtKB/TrEMBL
PROSITE EGF_LAM_1 UniProtKB/TrEMBL
  EGF_LAM_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005932 RatGTEx
SMART EGF UniProtKB/TrEMBL
  EGF_Lam UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF57184 UniProtKB/TrEMBL
UniProt A6J807 ENTREZGENE, UniProtKB/TrEMBL
  D4A3L3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Megf9  multiple EGF-like-domains 9  Egfl5_predicted  EGF-like-domain, multiple 5 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Egfl5_predicted  EGF-like-domain, multiple 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED