Sugct (succinylCoA:glutarate-CoA transferase) - Rat Genome Database

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Gene: Sugct (succinylCoA:glutarate-CoA transferase) Rattus norvegicus
Analyze
Symbol: Sugct
Name: succinylCoA:glutarate-CoA transferase
RGD ID: 1308114
Description: Predicted to enable succinate-hydroxymethylglutarate CoA-transferase activity. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in glutaric acidemia type 3. Orthologous to human SUGCT (succinyl-CoA:glutarate-CoA transferase); INTERACTS WITH (+)-schisandrin B; 1-nitropropane; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: caiB/baiF CoA-transferase family protein C7orf10 homolog; dicarboxyl-CoA:dicarboxylic acid coenzyme A transferase SUGCT; hypothetical protein LOC361253; LOC361253; RGD1308114; similar to cDNA sequence AF397014; succinate--hydroxymethylglutarate CoA-transferase; succinyl-CoA:glutarate CoA-transferase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81752,072,012 - 52,929,852 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1752,072,052 - 52,930,281 (+)EnsemblGRCr8
mRatBN7.21747,376,392 - 48,234,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1747,376,521 - 48,234,376 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1750,573,882 - 51,440,720 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01754,576,779 - 55,443,610 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01748,678,690 - 49,542,022 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01749,991,314 - 51,030,950 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01748,313,139 - 49,097,298 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41755,271,485 - 56,354,931 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1743,461,380 - 44,309,778 (+)NCBICelera
RGSC_v3.11755,274,325 - 56,357,765 (+)NCBI
Cytogenetic Map17q11-q12.1NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,4-dioxane  (ISO)
1-nitropropane  (EXP)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,4-diaminotoluene  (EXP)
2,6-diaminotoluene  (EXP)
2-acetamidofluorene  (EXP)
2-nitro-p-phenylenediamine  (EXP)
2-nitropropane  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4-acetylaminofluorene  (EXP)
4-hydroxyphenyl retinamide  (ISO)
4-nitro-1,2-phenylenediamine  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flutamide  (EXP)
formaldehyde  (ISO)
furan  (EXP)
genistein  (EXP)
glyphosate  (EXP)
indole-3-methanol  (EXP)
inulin  (ISO)
Lasiocarpine  (ISO)
lead(0)  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
propanal  (ISO)
quercitrin  (ISO)
rotenone  (EXP)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
toluene  (ISO)
triclosan  (ISO)
triphenyl phosphate  (EXP)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (IBA,IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334   PMID:18614015   PMID:23893049  


Genomics

Comparative Map Data
Sugct
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81752,072,012 - 52,929,852 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1752,072,052 - 52,930,281 (+)EnsemblGRCr8
mRatBN7.21747,376,392 - 48,234,362 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1747,376,521 - 48,234,376 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1750,573,882 - 51,440,720 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01754,576,779 - 55,443,610 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01748,678,690 - 49,542,022 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01749,991,314 - 51,030,950 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01748,313,139 - 49,097,298 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41755,271,485 - 56,354,931 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1743,461,380 - 44,309,778 (+)NCBICelera
RGSC_v3.11755,274,325 - 56,357,765 (+)NCBI
Cytogenetic Map17q11-q12.1NCBI
SUGCT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38740,135,005 - 41,038,816 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl740,134,044 - 40,861,613 (+)Ensemblhg38GRCh38
GRCh37740,174,604 - 40,900,362 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36740,141,100 - 40,866,882 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34739,947,814 - 40,673,597NCBI
Celera740,162,765 - 40,891,115 (+)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef740,058,468 - 40,785,616 (+)NCBIHuRef
CHM1_1740,177,089 - 40,902,748 (+)NCBICHM1_1
T2T-CHM13v2.0740,292,462 - 41,196,673 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2740,213,004 - 40,940,183 (+)NCBI
Sugct
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391317,032,057 - 17,869,380 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1317,032,057 - 17,870,138 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381316,857,472 - 17,694,795 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1316,857,472 - 17,695,553 (-)Ensemblmm10GRCm38
MGSCv371316,949,306 - 17,786,599 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361316,642,614 - 17,479,881 (-)NCBIMGSCv36mm8
Celera1317,138,701 - 17,997,954 (-)NCBICelera
Cytogenetic Map13A2NCBI
cM Map135.92NCBI
Sugct
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554602,866,877 - 3,559,615 (-)Ensembl
ChiLan1.0NW_0049554602,866,466 - 3,559,625 (-)NCBIChiLan1.0ChiLan1.0
SUGCT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2647,579,968 - 48,299,341 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1795,904,710 - 96,624,028 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0743,381,156 - 44,100,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1743,421,327 - 44,139,815 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl743,421,615 - 44,139,738 (-)EnsemblpanPan2panpan1.1
SUGCT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1189,051,920 - 9,766,342 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl189,030,745 - 9,766,277 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha188,900,180 - 9,614,482 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0189,100,042 - 9,814,780 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl189,098,492 - 9,814,767 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1189,078,291 - 9,792,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0189,047,630 - 9,762,322 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0189,162,495 - 9,876,803 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sugct
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511896,212,245 - 96,890,719 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647815,424,041 - 16,102,024 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647815,424,010 - 16,102,401 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUGCT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1853,639,872 - 54,283,251 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11853,639,588 - 54,283,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21858,827,834 - 59,169,709 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUGCT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12117,621,886 - 18,511,591 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2118,151,535 - 18,511,310 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660623,896,493 - 4,667,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sugct
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474020,305,329 - 21,071,641 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474020,268,868 - 21,071,723 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sugct
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11435,630,113 - 36,422,333 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Sugct
5639 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631497Bp98Blood pressure QTL 983.66arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)174949693265155015Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
152023626Bp403Blood pressure QTL 4033.86arterial blood pressure trait (VT:2000000)172413612784432719Rat
2301412Kidm40Kidney mass QTL 400.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)174238816487388164Rat
9590107Sffal7Serum free fatty acids level QTL 74.810.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)173310464578104645Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1354654Spl7Serum phospholipid level QTL 75.5blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)173803135483031354Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1598871Memor5Memory QTL 55.3exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)174096801789341781Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
1354629Scl31Serum cholesterol level QTL 314.1blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)173803135483031354Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1600398Edcs5Endometrial carcinoma susceptibility QTL 52.2uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)173544694975762341Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
152025238Slep14Serum leptin concentration QTL 144.62blood leptin amount (VT:0005667)172439059584432719Rat
1354638Insul1Insulin level QTL 14.8blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)173803135483031354Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354635Bp245Blood pressure QTL 2456arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)173803135483031354Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
8552928Pigfal9Plasma insulin-like growth factor 1 level QTL 99blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)173310464578104645Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
12904736Cm121Cardiac mass QTL 1210.043heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)174238816487388164Rat
1300148Bp192Blood pressure QTL 1923.47arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)174605012691050126Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
2324621Coatc5Coat color QTL 5coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)174265489587654895Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
1354619Bp242Blood pressure QTL 2426.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)173768787782687877Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1300129Rf25Renal function QTL 253.03blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)174106235286062352Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
152023740Bp406Blood pressure QTL 4066.06arterial blood pressure trait (VT:2000000)172413612784432719Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
152023737Bp405Blood pressure QTL 4055.06arterial blood pressure trait (VT:2000000)2413612784432719Rat
152023736Bp404Blood pressure QTL 4043.78arterial blood pressure trait (VT:2000000)172413612784432719Rat
724528Uae4Urinary albumin excretion QTL 44.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)173604553781045537Rat

Markers in Region
D17Rat21  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81752,739,042 - 52,739,176 (+)Marker Load Pipeline
mRatBN7.21748,043,531 - 48,043,665 (+)MAPPERmRatBN7.2
Rnor_6.01750,839,434 - 50,839,567NCBIRnor6.0
Rnor_5.01748,905,725 - 48,905,858UniSTSRnor5.0
RGSC_v3.41756,163,436 - 56,163,570RGDRGSC3.4
RGSC_v3.41756,163,437 - 56,163,570UniSTSRGSC3.4
Celera1744,119,786 - 44,119,919UniSTS
RGSC_v3.11756,166,278 - 56,166,411RGD
RH 3.4 Map17485.19UniSTS
RH 3.4 Map17485.19RGD
RH 2.0 Map17368.2RGD
SHRSP x BN Map1730.3699RGD
Cytogenetic Map17q12.1UniSTS
D17Rat22  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81752,362,475 - 52,362,652 (+)Marker Load Pipeline
mRatBN7.21747,666,945 - 47,667,122 (+)MAPPERmRatBN7.2
Rnor_6.01750,446,749 - 50,446,925NCBIRnor6.0
Rnor_5.01748,516,679 - 48,516,855UniSTSRnor5.0
RGSC_v3.41755,773,039 - 55,773,216RGDRGSC3.4
RGSC_v3.41755,773,040 - 55,773,216UniSTSRGSC3.4
Celera1743,752,261 - 43,752,437UniSTS
RGSC_v3.11755,775,880 - 55,776,057RGD
RH 2.0 Map17372.8RGD
SHRSP x BN Map1730.3699RGD
FHH x ACI Map1735.5899RGD
Cytogenetic Map17q12.1UniSTS
D17Rat23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21747,999,773 - 47,999,948 (+)MAPPERmRatBN7.2
Rnor_6.01750,795,693 - 50,795,867NCBIRnor6.0
Rnor_5.01748,861,888 - 48,862,062UniSTSRnor5.0
RGSC_v3.41756,119,309 - 56,119,484RGDRGSC3.4
RGSC_v3.41756,119,310 - 56,119,484UniSTSRGSC3.4
Celera1744,076,084 - 44,076,258UniSTS
RGSC_v3.11756,122,150 - 56,122,325RGD
RH 2.0 Map17366.1RGD
SHRSP x BN Map1730.3699RGD
FHH x ACI Map1735.5499RGD
Cytogenetic Map17q12.1UniSTS
D17Rat121  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81752,416,040 - 52,416,200 (+)Marker Load Pipeline
Celera1743,805,606 - 43,805,765UniSTS
SHRSP x BN Map1730.3699RGD
SHRSP x BN Map1730.3699UniSTS
Cytogenetic Map17q12.1UniSTS
RH132746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21748,234,061 - 48,234,266 (+)MAPPERmRatBN7.2
Rnor_6.01751,030,650 - 51,030,854NCBIRnor6.0
Rnor_5.01749,096,998 - 49,097,202UniSTSRnor5.0
RGSC_v3.41756,354,631 - 56,354,835UniSTSRGSC3.4
Celera1744,309,478 - 44,309,682UniSTS
RH 3.4 Map17488.7UniSTS
Cytogenetic Map17q12.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 1 18 49 39 110 67 11 48 36 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC079348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000108763   ⟹   ENSRNOP00000079174
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1752,072,052 - 52,929,996 (+)Ensembl
mRatBN7.2 Ensembl1747,376,521 - 48,234,376 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137064   ⟹   ENSRNOP00000100791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1752,072,052 - 52,930,281 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000139022   ⟹   ENSRNOP00000109393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1752,072,052 - 52,930,281 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000146890   ⟹   ENSRNOP00000102580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1752,072,052 - 52,930,227 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000159955   ⟹   ENSRNOP00000110625
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1752,077,541 - 52,930,281 (+)Ensembl
RefSeq Acc Id: NM_001014146   ⟹   NP_001014168
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,052 - 52,929,852 (+)NCBI
mRatBN7.21747,376,522 - 48,234,362 (+)NCBI
Rnor_6.01749,991,314 - 51,030,950 (+)NCBI
Rnor_5.01748,313,139 - 49,097,298 (+)NCBI
RGSC_v3.41755,271,485 - 56,354,931 (+)RGD
Celera1743,461,380 - 44,309,778 (+)RGD
Sequence:
RefSeq Acc Id: XM_039095898   ⟹   XP_038951826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,012 - 52,929,852 (+)NCBI
mRatBN7.21747,376,392 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095899   ⟹   XP_038951827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,012 - 52,929,852 (+)NCBI
mRatBN7.21747,376,392 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095900   ⟹   XP_038951828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,076,208 - 52,929,852 (+)NCBI
mRatBN7.21747,380,484 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095901   ⟹   XP_038951829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,028 - 52,929,852 (+)NCBI
mRatBN7.21747,376,495 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095902   ⟹   XP_038951830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,012 - 52,929,852 (+)NCBI
mRatBN7.21747,376,392 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095903   ⟹   XP_038951831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,012 - 52,929,852 (+)NCBI
mRatBN7.21747,376,392 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095904   ⟹   XP_038951832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,111,471 - 52,929,852 (+)NCBI
mRatBN7.21747,415,942 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095906   ⟹   XP_038951834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,111,471 - 52,929,852 (+)NCBI
mRatBN7.21747,415,942 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095907   ⟹   XP_038951835
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,156,289 - 52,929,852 (+)NCBI
mRatBN7.21747,460,777 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_039095909   ⟹   XP_038951837
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,172,463 - 52,929,852 (+)NCBI
mRatBN7.21747,477,289 - 48,234,362 (+)NCBI
RefSeq Acc Id: XM_063276617   ⟹   XP_063132687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,072,012 - 52,929,852 (+)NCBI
RefSeq Acc Id: XM_063276618   ⟹   XP_063132688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81752,111,471 - 52,929,852 (+)NCBI
RefSeq Acc Id: NP_001014168   ⟸   NM_001014146
- UniProtKB: F1LXJ6 (UniProtKB/Swiss-Prot),   Q68FU4 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_038951827   ⟸   XM_039095899
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951830   ⟸   XM_039095902
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951826   ⟸   XM_039095898
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951831   ⟸   XM_039095903
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038951829   ⟸   XM_039095901
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951828   ⟸   XM_039095900
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951832   ⟸   XM_039095904
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951834   ⟸   XM_039095906
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951835   ⟸   XM_039095907
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951837   ⟸   XM_039095909
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000079174   ⟸   ENSRNOT00000108763
RefSeq Acc Id: XP_063132687   ⟸   XM_063276617
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063132688   ⟸   XM_063276618
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000110625   ⟸   ENSRNOT00000159955
Ensembl Acc Id: ENSRNOP00000100791   ⟸   ENSRNOT00000137064
Ensembl Acc Id: ENSRNOP00000102580   ⟸   ENSRNOT00000146890
Ensembl Acc Id: ENSRNOP00000109393   ⟸   ENSRNOT00000139022

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FU4-F1-model_v2 AlphaFold Q68FU4 1-436 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308114 AgrOrtholog
BioCyc Gene G2FUF-9111 BioCyc
Ensembl Genes ENSRNOG00000066247 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000108763 ENTREZGENE
  ENSRNOT00000108763.1 UniProtKB/Swiss-Prot
  ENSRNOT00000137064 ENTREZGENE
  ENSRNOT00000139022 ENTREZGENE
  ENSRNOT00000146890 ENTREZGENE
Gene3D-CATH 3.30.1540.10 UniProtKB/Swiss-Prot
  Crotonobetainyl-coa:carnitine coa-transferase, domain 1 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7107655 IMAGE-MGC_LOAD
InterPro CoA-transferase_III_domain UniProtKB/Swiss-Prot
  CoA-Trfase_fam_III UniProtKB/Swiss-Prot
  CoA-Trfase_III_dom3_sf UniProtKB/Swiss-Prot
  CoA-Trfase_III_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:361253 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94802 IMAGE-MGC_LOAD
NCBI Gene 361253 ENTREZGENE
PANTHER SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE UniProtKB/Swiss-Prot
  SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE UniProtKB/Swiss-Prot
Pfam CoA_transf_3 UniProtKB/Swiss-Prot
PhenoGen Sugct PhenoGen
RatGTEx ENSRNOG00000066247 RatGTEx
Superfamily-SCOP SSF89796 UniProtKB/Swiss-Prot
UniProt A0ABK0LC44_RAT UniProtKB/TrEMBL
  A0ABK0LF49_RAT UniProtKB/TrEMBL
  A0ABK0LLM2_RAT UniProtKB/TrEMBL
  A0ABK0LYM8_RAT UniProtKB/TrEMBL
  F1LXJ6 ENTREZGENE
  Q68FU4 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary F1LXJ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-31 Sugct  succinylCoA:glutarate-CoA transferase  RGD1308114  similar to cDNA sequence AF397014  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1308114  similar to cDNA sequence AF397014  RGD1308114_predicted  similar to cDNA sequence AF397014 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1308114_predicted  similar to cDNA sequence AF397014 (predicted)  LOC361253_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361253_predicted  similar to cDNA sequence AF397014 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL