Advanced Search (OLGA)

Gene: Mfap5 (microfibril associated protein 5) Rattus norvegicus

Analyze

Symbol:

Mfap5

Name:

microfibril associated protein 5

RGD ID:

1307919

Description:

Predicted to be involved in definitive hemopoiesis and embryonic eye morphogenesis. Predicted to act upstream of or within supramolecular fiber organization. Predicted to be located in extracellular matrix. Predicted to be active in microfibril. Human ortholog(s) of this gene implicated in thoracic aortic aneurysm. Orthologous to human MFAP5 (microfibril associated protein 5); PARTICIPATES IN Notch signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC362429; microfibrillar associated protein 5; microfibrillar-associated protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MFAP5 (microfibril associated protein 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Mfap5 (microfibrillar associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mfap5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MFAP5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MFAP5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mfap5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MFAP5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MFAP5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mfap5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mfap5 (microfibril associated protein 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MFAP5 (microfibril associated protein 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MFAP5 (microfibril associated protein 5)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mfap5 (microfibrillar associated protein 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mfap5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mfap5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	157,399,919 - 157,422,448 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	157,395,597 - 157,422,448 (+)	Ensembl				GRCr8
mRatBN7.2	4	155,727,925 - 155,750,458 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,458 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	161,990,763 - 162,013,315 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	157,773,981 - 157,796,536 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	156,420,603 - 156,443,156 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	155,313,671 - 155,336,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	155,313,671 - 155,336,228 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	222,339,036 - 222,361,316 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	158,959,286 - 158,981,967 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	144,548,899 - 144,571,419 (+)	NCBI		Celera
RGSC_v3.1	4	159,212,179 - 159,226,867 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital contractural arachnodactyly (ISO)

connective tissue disease (ISO)

Familial Thoracic Aortic Aneurysm 9 (ISO)

Marfan syndrome (ISO)

thoracic aortic aneurysm (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

Azoxymethane (ISO)

azoxystrobin (EXP)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

calcitriol (ISO)

cantharidin (ISO)

carbon nanotube (ISO)

chloropicrin (ISO)

chlorpyrifos (EXP)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

D-glucose (ISO)

dexamethasone (EXP,ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

dimethyl sulfoxide (ISO)

dimethylarsinic acid (EXP)

diuron (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

fructose (ISO)

fulvestrant (ISO)

furan (EXP)

gentamycin (EXP)

glucose (ISO)

glyphosate (EXP)

imidacloprid (EXP)

isoprenaline (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mercury atom (ISO)

mercury dibromide (ISO)

mercury(0) (ISO)

methimazole (EXP)

oxaliplatin (EXP)

paclitaxel (ISO)

paracetamol (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (EXP)

phenylmercury acetate (ISO)

progesterone (ISO)

propiconazole (EXP)

rac-lactic acid (ISO)

raloxifene (ISO)

rotenone (EXP)

SB 431542 (ISO)

silicon dioxide (EXP,ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tebuconazole (ISO)

temozolomide (ISO)

testosterone (EXP)

tetrachloromethane (ISO)

thiabendazole (EXP)

titanium dioxide (ISO)

topotecan (EXP)

triadimefon (ISO)

triclosan (ISO)

troglitazone (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

definitive hemopoiesis (ISO)

embryonic eye morphogenesis (IBA)

supramolecular fiber organization (ISO)

Cellular Component

extracellular matrix (ISO)

microfibril (IBA,IEA)

Molecular Function

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Notch signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	PID Annotation Import Pipeline	Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17099216	PMID:23963447	PMID:24006456	PMID:27068509	PMID:37569268

Genomics

Comparative Map Data

Mfap5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	157,399,919 - 157,422,448 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	157,395,597 - 157,422,448 (+)	Ensembl				GRCr8
mRatBN7.2	4	155,727,925 - 155,750,458 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,458 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	161,990,763 - 162,013,315 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	157,773,981 - 157,796,536 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	156,420,603 - 156,443,156 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	155,313,671 - 155,336,228 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	155,313,671 - 155,336,228 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	222,339,036 - 222,361,316 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	158,959,286 - 158,981,967 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	144,548,899 - 144,571,419 (+)	NCBI		Celera
RGSC_v3.1	4	159,212,179 - 159,226,867 (+)	NCBI
Cytogenetic Map	4	q42	NCBI

MFAP5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	8,645,943 - 8,662,826 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	8,637,346 - 8,672,519 (-)	Ensembl			hg38	GRCh38
GRCh37	12	8,798,539 - 8,815,422 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	8,689,807 - 8,706,700 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	12	8,689,806 - 8,706,700	NCBI
Celera	12	10,336,125 - 10,353,038 (-)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	8,580,581 - 8,597,464 (-)	NCBI		HuRef
CHM1_1	12	8,767,519 - 8,784,408 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	8,629,231 - 8,655,815 (-)	NCBI		T2T-CHM13v2.0

Mfap5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	122,490,543 - 122,506,249 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	122,482,804 - 122,506,249 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	122,513,584 - 122,529,290 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	122,505,845 - 122,529,290 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	122,463,694 - 122,479,308 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	122,479,295 - 122,494,909 (+)	NCBI		MGSCv36	mm8
Celera	6	124,308,569 - 124,324,109 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	57.61	NCBI

Mfap5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	6,402,293 - 6,413,992 (+)	Ensembl
ChiLan1.0	NW_004955413	6,401,429 - 6,415,177 (+)	NCBI	ChiLan1.0	ChiLan1.0

MFAP5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	14,171,730 - 14,188,752 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	14,168,490 - 14,185,760 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	8,731,893 - 8,746,850 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	8,944,872 - 8,961,808 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	8,944,872 - 8,961,876 (-)	Ensembl			panPan2	panpan1.1

MFAP5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	37,028,518 - 37,042,657 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	37,028,037 - 37,040,592 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	9,573,634 - 9,587,772 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	37,377,943 - 37,392,101 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	37,377,329 - 37,391,298 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	37,258,724 - 37,272,880 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	37,294,025 - 37,308,175 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	9,060,205 - 9,074,357 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mfap5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	98,705,608 - 98,713,031 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936870	57,015 - 71,325 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936870	58,863 - 65,844 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MFAP5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	62,742,319 - 62,757,519 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	5	62,742,520 - 62,757,522 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	65,575,099 - 65,587,521 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MFAP5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	8,470,233 - 8,485,537 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	8,468,307 - 8,485,493 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666089	556,374 - 573,496 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mfap5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	4,881,981 - 4,888,527 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624860	4,877,811 - 4,891,149 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mfap5
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	24,572,665 - 24,587,471 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mfap5
250 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	108
Count of miRNA genes:	92
Interacting mature miRNAs:	95
Transcripts:	ENSRNOT00000020812
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	146370897	184426481	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	149763204	169799698	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	150095743	159267220	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	146370897	184426481	Rat
6478757	Anxrr44	Anxiety related response QTL 44		0.01087	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	157292416	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	147299608	184426481	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
6478782	Anxrr52	Anxiety related response QTL 52		0.02091	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
6478720	Alc23	Alcohol consumption QTL 23		0.00509	drinking behavior trait (VT:0001422)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	155834926	184426481	Rat
6478785	Anxrr53	Anxiety related response QTL 53		0.01397	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
6478728	Anxrr36	Anxiety related response QTL 36		0.01061	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	148121375	176967367	Rat
6478733	Anxrr37	Anxiety related response QTL 37		0.00095	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
6478737	Anxrr38	Anxiety related response QTL 38		0.00159	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	155834926	184426481	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	146370897	184426481	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	148834094	168870974	Rat

Markers in Region

RH133251

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	4	222,359,606 - 222,361,123	UniSTS	Rnor5.0
RH 3.4 Map	4	992.92	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
13	12	63	157	75	74	43	30	43	6	244	126	11	136	54	92	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223485	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000020812 ⟹ ENSRNOP00000020812

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,399,919 - 157,422,448 (+)	Ensembl
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,458 (+)	Ensembl
Rnor_6.0 Ensembl	4	155,313,671 - 155,336,228 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089614 ⟹ ENSRNOP00000075112

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,395,597 - 157,422,448 (+)	Ensembl
mRatBN7.2 Ensembl	4	155,735,718 - 155,750,458 (+)	Ensembl
Rnor_6.0 Ensembl	4	155,321,553 - 155,336,191 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102356 ⟹ ENSRNOP00000079414

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,399,919 - 157,422,448 (+)	Ensembl
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,458 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118080 ⟹ ENSRNOP00000087013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,399,919 - 157,422,106 (+)	Ensembl
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,116 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119438 ⟹ ENSRNOP00000087536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	157,399,919 - 157,422,448 (+)	Ensembl
mRatBN7.2 Ensembl	4	155,727,925 - 155,750,458 (+)	Ensembl

RefSeq Acc Id:

NM_001108644 ⟹ NP_001102114

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,399,919 - 157,422,448 (+)	NCBI
mRatBN7.2	4	155,727,925 - 155,750,458 (+)	NCBI
Rnor_6.0	4	155,313,671 - 155,336,228 (+)	NCBI
Rnor_5.0	4	222,339,036 - 222,361,316 (+)	NCBI
RGSC_v3.4	4	158,959,286 - 158,981,967 (+)	RGD
Celera	4	144,548,899 - 144,571,419 (+)	RGD

Sequence:

show sequence

AGATTTCCAGGTGCAAGAAGACAAGGTTGCCCCAGAGAAGCAGTCGCATCAAGGTGAGCCAGCC
CCCTAAGTCACTAAGACAGACTGCAGACAGACACACTCGGCAGCCAGAGGCCACGGCGGACAGA
GCACAGCGCTGTAGACAATATGCTGGTCTTTGGGCAGAAGGCCTTGCTGCTTGTCGTGGCACTC
AGCATCCCCTCCGACTGGCTACCCCTAGGGGTCAGTGGCCAACGAGGAGATGACGTACCCGAGA
CATTCACAGATGACCCTAATCTGGTGAATGATCCTTCTACAGACGATACAGTTCTGGCGGATAT
CACACCTTCCACGGATGACCTGGCCTCAGCTGGTGACAAAAATACTACTGCAGAGTGCCGGGAT
GAGAAGTTTGCTTGTACAAGACTGTACTCTGTCCATCGGCCCGTCAGACAGTGTGTGCACCAGG
CCTGCTTCACCAGTTTACGTCGCATGTACATCATCAATAATGAGATCTGTTCCCGGCTTGTCTG
TAAAGAACACGAGGCCATGAAAGATGAGCTTTGCCGGCAGATGGCAGGCCTGCCTCCAAGGCGA
CTCCGCCGCTCCAACTACTTCCGACTTCCTCCCTGTGAAAATATGAACTTACAGAGACCCGATG
GTCCGTGATCACCAAGGAAGAACGAAGAAAGTGTGGATGAGGGAATCCGAAATTCCTTCTACTC
CAACCGCTGCCATCTGTCCCGTAGACGTGTATTTTTAAACTAAGCCCTTTGCAATGTCCCGGCT
TCCTACCCTACTCTGTAATTTTCACTGGAACTGGTAACGTTTGTCTCGTTTCGCAATACAGTGT
CTCCATTGTTGTACGGGCTCGCTGATATCTGGTATGGGAGACAAGGTGG

hide sequence

RefSeq Acc Id:

XM_017592703 ⟹ XP_017448192

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	157,407,601 - 157,422,412 (+)	NCBI
mRatBN7.2	4	155,735,701 - 155,750,422 (+)	NCBI
Rnor_6.0	4	155,321,509 - 155,336,192 (+)	NCBI

Sequence:

show sequence

CTTTGGAATGAGGGTGTGAGTGACTTCAAATTCCCATCCCCTTTCATTCCAACCTTATTGTAAC
ACTGCTTTCTACGCCTCTGGCCTGGCCCCTTCTCTCTGTCTCTCTTTTCTCTCTCTCCCTCCCT
CCTTCCTTGCTCCCCCCCACCCCCCATTGTTTCAGAGTAGGCCAAATGTGAAGTCTTTCCAAGG
GTGTGGCTGTGTTCATCTTATTCTCCAGCCCAAGTGGAACAGAGGAAAAGCCAGAGAAGGACAG
ACACACTCGGCAGCCAGAGGCCACGGCGGACAGAGCACAGCGCTGTAGACAATATGCTGGTCTT
TGGGCAGAAGGCCTTGCTGCTTGTCGTGGCACTCAGCATCCCCTCCGACTGGCTACCCCTAGGG
GTCAGTGGCCAACGAGGAGATGACGTACCCGAGACATTCACAGATGACCCTAATCTGGTGAATG
ATCCTTCTACAGACGATACAGTTCTGGCGGATATCACACCTTCCACGGATGACCTGGCCTCAGC
TGGTGACAAAAATACTACTGCAGAGTGCCGGGATGAGAAGTTTGCTTGTACAAGACTGTACTCT
GTCCATCGGCCCGTCAGACAGTGTGTGCACCAGGCCTGCTTCACCAGTTTACGTCGCATGTACA
TCATCAATAATGAGATCTGTTCCCGGCTTGTCTGTAAAGAACACGAGGCCATGAAAGATGAGCT
TTGCCGGCAGATGGCAGGCCTGCCTCCAAGGCGACTCCGCCGCTCCAACTACTTCCGACTTCCT
CCCTGTGAAAATATGAACTTACAGAGACCCGATGGTCCGTGATCACCAAGGAAGAACGAAGAAA
GTGTGGATGAGGGAATCCGAAATTCCTTCTACTCCAACCGCTGCCATCTGTCCCGTAGACGTGT
ATTTTTAAACTAAGCCCTTTGCAATGTCCCGGCTTCCTACCCTACTCTGTAATTTTCACTGGAA
CTGGTAACGTTTGTCTCGTTTCGCAATACAGTGTCTCCATTGTTGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102114	(Get FASTA)	NCBI Sequence Viewer
	XP_017448192	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01990	(Get FASTA)	NCBI Sequence Viewer
	EDM01991	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000020812
	ENSRNOP00000020812.5
	ENSRNOP00000075112.3
	ENSRNOP00000079414.1
	ENSRNOP00000087013.1
	ENSRNOP00000087536.1

RefSeq Acc Id:	NP_001102114 ⟸ NM_001108644
- Peptide Label:	precursor
- UniProtKB:	D3ZJB1 (UniProtKB/TrEMBL), A6ILE8 (UniProtKB/TrEMBL), A0A8I6GG30 (UniProtKB/TrEMBL), A6ILE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDD LASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAM KDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP hide sequence

RefSeq Acc Id:	XP_017448192 ⟸ XM_017592703
- Peptide Label:	isoform X1
- UniProtKB:	D3ZJB1 (UniProtKB/TrEMBL), A6ILE8 (UniProtKB/TrEMBL), A0A8I6GG30 (UniProtKB/TrEMBL), A6ILE9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLVFGQKALLLVVALSIPSDWLPLGVSGQRGDDVPETFTDDPNLVNDPSTDDTVLADITPSTDD LASAGDKNTTAECRDEKFACTRLYSVHRPVRQCVHQACFTSLRRMYIINNEICSRLVCKEHEAM KDELCRQMAGLPPRRLRRSNYFRLPPCENMNLQRPDGP hide sequence

Ensembl Acc Id:

ENSRNOP00000075112 ⟸ ENSRNOT00000089614

Ensembl Acc Id:

ENSRNOP00000020812 ⟸ ENSRNOT00000020812

Ensembl Acc Id:

ENSRNOP00000087013 ⟸ ENSRNOT00000118080

Ensembl Acc Id:

ENSRNOP00000087536 ⟸ ENSRNOT00000119438

Ensembl Acc Id:

ENSRNOP00000079414 ⟸ ENSRNOT00000102356

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZJB1-F1-model_v2	AlphaFold	D3ZJB1	1-166	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693381

Promoter ID:

EPDNEW_R3893

Type:

multiple initiation site

Name:

Mfap5_2

Description:

microfibril associated protein 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3894

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	155,321,565 - 155,321,625	EPDNEW

RGD ID:

13693370

Promoter ID:

EPDNEW_R3894

Type:

initiation region

Name:

Mfap5_1

Description:

microfibril associated protein 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R3893

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	155,321,767 - 155,321,827	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307919	AgrOrtholog
BioCyc Gene	G2FUF-43154	BioCyc
Ensembl Genes	ENSRNOG00000015505	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000020812	ENTREZGENE
	ENSRNOT00000020812.8	UniProtKB/TrEMBL
	ENSRNOT00000089614.3	UniProtKB/TrEMBL
	ENSRNOT00000102356.2	UniProtKB/TrEMBL
	ENSRNOT00000118080.2	UniProtKB/TrEMBL
	ENSRNOT00000119438.2	UniProtKB/TrEMBL
InterPro	MAGP	UniProtKB/TrEMBL
KEGG Report	rno:362429	UniProtKB/TrEMBL
NCBI Gene	362429	ENTREZGENE
PANTHER	MAGP	UniProtKB/TrEMBL
	MICROFIBRILLAR-ASSOCIATED PROTEIN 5	UniProtKB/TrEMBL
Pfam	MAGP	UniProtKB/TrEMBL
PhenoGen	Mfap5	PhenoGen
RatGTEx	ENSRNOG00000015505	RatGTEx
UniProt	A0A0G2K9S8_RAT	UniProtKB/TrEMBL
	A0A8I6A505_RAT	UniProtKB/TrEMBL
	A0A8I6G396_RAT	UniProtKB/TrEMBL
	A0A8I6GG30	ENTREZGENE, UniProtKB/TrEMBL
	A6ILE8	ENTREZGENE, UniProtKB/TrEMBL
	A6ILE9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZJB1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-06-13	Mfap5	microfibril associated protein 5	Mfap5	microfibrillar associated protein 5	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Mfap5	microfibrillar associated protein 5	Mfap5_predicted	microfibrillar associated protein 5 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mfap5_predicted	microfibrillar associated protein 5 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

Imported Annotations - PID (archival)