Hmgn1 (high mobility group nucleosome binding domain 1) - Rat Genome Database

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Gene: Hmgn1 (high mobility group nucleosome binding domain 1) Rattus norvegicus
Analyze
Symbol: Hmgn1
Name: high mobility group nucleosome binding domain 1
RGD ID: 1307761
Description: Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to act upstream of or within several processes, including nucleotide-excision repair; post-embryonic camera-type eye morphogenesis; and response to UV. Predicted to be located in female germ cell nucleus. Predicted to be active in nucleus. Orthologous to human HMGN1 (high mobility group nucleosome binding domain 1); PARTICIPATES IN nucleotide excision repair pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: high mobility group nucleosomal binding domain 1; high-mobility group nucleosome binding domain 1; LOC100911295; LOC360704; non-histone chromosomal protein HMG-14; non-histone chromosomal protein HMG-14-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,891,813 - 48,897,732 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,891,814 - 48,897,771 (-)EnsemblGRCr8
mRatBN7.21135,422,328 - 35,428,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,422,328 - 35,428,254 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,079,503 - 44,085,432 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,750,883 - 36,756,812 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,896,729 - 35,902,648 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,474,028 - 36,479,947 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,474,840 - 36,479,868 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1139,482,408 - 39,488,326 (+)Ensemblrn6Rnor6.0
Rnor_5.01140,004,657 - 40,010,576 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,429,800 - 36,435,719 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1133,043,906 - 33,049,825 (+)NCBICelera
RGSC_v3.11136,487,388 - 36,493,308 (-)NCBI
Cytogenetic Map11q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
amiodarone  (EXP)
aristolochic acid A  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
cadmium dichloride  (EXP)
caffeine  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyproconazole  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
inulin  (ISO)
ketamine  (EXP)
L-ethionine  (EXP)
leflunomide  (EXP)
lipopolysaccharide  (ISO)
methidathion  (ISO)
miconazole  (ISO)
N-nitrosodiethylamine  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
ochratoxin A  (ISO)
omeprazole  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
PhIP  (EXP)
pirinixic acid  (EXP,ISO)
propiconazole  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
nucleoplasm  (ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Nucleotide excision repair: new tricks with old bricks. Kamileri I, etal., Trends Genet. 2012 Nov;28(11):566-73. doi: 10.1016/j.tig.2012.06.004. Epub 2012 Jul 22.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11133167   PMID:12660172   PMID:16466397   PMID:16780588   PMID:21278158   PMID:22736760  


Genomics

Comparative Map Data
Hmgn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,891,813 - 48,897,732 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,891,814 - 48,897,771 (-)EnsemblGRCr8
mRatBN7.21135,422,328 - 35,428,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,422,328 - 35,428,254 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,079,503 - 44,085,432 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,750,883 - 36,756,812 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,896,729 - 35,902,648 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,474,028 - 36,479,947 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,474,840 - 36,479,868 (-)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl1139,482,408 - 39,488,326 (+)Ensemblrn6Rnor6.0
Rnor_5.01140,004,657 - 40,010,576 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,429,800 - 36,435,719 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1133,043,906 - 33,049,825 (+)NCBICelera
RGSC_v3.11136,487,388 - 36,493,308 (-)NCBI
Cytogenetic Map11q11NCBI
HMGN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,342,315 - 39,349,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,342,315 - 39,349,653 (-)Ensemblhg38GRCh38
GRCh372140,714,241 - 40,721,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362139,636,111 - 39,642,917 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342139,636,111 - 39,642,917NCBI
Celera2125,911,870 - 25,918,680 (-)NCBICelera
Cytogenetic Map21q22.2ENTREZGENE
HuRef2126,182,661 - 26,189,471 (-)NCBIHuRef
CHM1_12140,275,470 - 40,282,285 (-)NCBICHM1_1
T2T-CHM13v2.02137,726,869 - 37,733,757 (-)NCBIT2T-CHM13v2.0
Hmgn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391695,922,788 - 95,928,925 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1695,921,818 - 95,928,929 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381696,121,588 - 96,127,725 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,120,618 - 96,127,729 (-)Ensemblmm10GRCm38
MGSCv371696,343,195 - 96,349,332 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361696,226,498 - 96,232,635 (-)NCBIMGSCv36mm8
Celera1697,195,761 - 97,201,908 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1656.83NCBI
Hmgn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,136,386 - 38,143,479 (-)Ensembl
ChiLan1.0NW_00495540738,136,386 - 38,142,587 (-)NCBIChiLan1.0ChiLan1.0
HMGN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,440,108 - 35,446,982 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,295,901 - 30,302,764 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02125,695,582 - 25,702,689 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,034,042 - 39,040,978 (-)NCBIPanPan1.1PanPan1.1panPan2
HMGN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13134,275,400 - 34,283,373 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3134,275,839 - 34,282,340 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3133,387,631 - 33,395,816 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03133,621,627 - 33,629,793 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3133,621,627 - 33,629,802 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13133,494,281 - 33,502,445 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03133,498,856 - 33,507,137 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03133,989,864 - 33,998,049 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hmgn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497133,615,824 - 33,622,503 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365003,847,517 - 3,852,039 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365003,845,320 - 3,852,000 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMGN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13202,905,233 - 202,943,575 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113202,936,313 - 202,943,496 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,102,765 - 213,109,753 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HMGN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1283,296,811 - 83,303,581 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605411,156,978 - 11,163,836 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmgn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474524,659,334 - 24,665,221 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474524,659,391 - 24,665,874 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Hmgn1
16 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:560
Count of miRNA genes:246
Interacting mature miRNAs:320
Transcripts:ENSRNOT00000075126, ENSRNOT00000075762
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH129914  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21135,422,466 - 35,422,663 (+)MAPPERmRatBN7.2
mRatBN7.21135,422,466 - 35,422,663 (-)MAPPERmRatBN7.2
Rnor_6.01136,474,167 - 36,474,363NCBIRnor6.0
Rnor_6.01139,487,992 - 39,488,188NCBIRnor6.0
Rnor_5.01142,697,526 - 42,697,722UniSTSRnor5.0
Rnor_5.01140,004,796 - 40,004,992UniSTSRnor5.0
RGSC_v3.41136,429,939 - 36,430,135UniSTSRGSC3.4
Celera1133,049,490 - 33,049,686UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
8 1 20 59 1 3 1 70 1 151 100 11 58 42 41 2 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000075126   ⟹   ENSRNOP00000065878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,891,814 - 48,897,771 (-)Ensembl
mRatBN7.2 Ensembl1135,422,332 - 35,428,254 (-)Ensembl
Rnor_6.0 Ensembl1139,482,408 - 39,488,326 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000075762   ⟹   ENSRNOP00000067432
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1135,422,328 - 35,428,168 (-)Ensembl
Rnor_6.0 Ensembl1136,474,840 - 36,479,868 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000094497   ⟹   ENSRNOP00000076505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,891,814 - 48,897,771 (-)Ensembl
mRatBN7.2 Ensembl1135,422,333 - 35,428,245 (-)Ensembl
RefSeq Acc Id: NM_001013184   ⟹   NP_001013202
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,891,813 - 48,897,732 (-)NCBI
mRatBN7.21135,422,328 - 35,428,247 (-)NCBI
Rnor_6.01136,474,028 - 36,479,947 (-)NCBI
Rnor_5.01140,004,657 - 40,010,576 (-)NCBI
RGSC_v3.41136,429,800 - 36,435,719 (-)RGD
Celera1133,043,906 - 33,049,825 (+)RGD
Sequence:
RefSeq Acc Id: NP_001013202   ⟸   NM_001013184
- UniProtKB: Q5U1W8 (UniProtKB/TrEMBL),   M0R8S8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067432   ⟸   ENSRNOT00000075762
Ensembl Acc Id: ENSRNOP00000065878   ⟸   ENSRNOT00000075126
Ensembl Acc Id: ENSRNOP00000076505   ⟸   ENSRNOT00000094497

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U1W8-F1-model_v2 AlphaFold Q5U1W8 1-96 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698086
Promoter ID:EPDNEW_R8611
Type:multiple initiation site
Name:Hmgn1_1
Description:high mobility group nucleosome binding domain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01136,479,961 - 36,480,021EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307761 AgrOrtholog
BioCyc Gene G2FUF-21713 BioCyc
Ensembl Genes ENSRNOG00000048226 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000050978 Ensembl
Ensembl Transcript ENSRNOT00000075126 ENTREZGENE
  ENSRNOT00000075126.3 UniProtKB/TrEMBL
  ENSRNOT00000094497.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302011 IMAGE-MGC_LOAD
InterPro HMG14/HMG17 UniProtKB/TrEMBL
KEGG Report rno:360704 UniProtKB/TrEMBL
MGC_CLONE MGC:105952 IMAGE-MGC_LOAD
NCBI Gene 360704 ENTREZGENE
PANTHER NON-HISTONE CHROMOSOMAL PROTEIN HMG-14 UniProtKB/TrEMBL
  NONHISTONE CHROMOSOMAL PROTEIN HMG UniProtKB/TrEMBL
Pfam HMG14_17 UniProtKB/TrEMBL
PhenoGen Hmgn1 PhenoGen
PRINTS NONHISHMG17 UniProtKB/TrEMBL
PROSITE HMG14_17 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048226 RatGTEx
  ENSRNOG00000050978 RatGTEx
SMART HMG17 UniProtKB/TrEMBL
UniProt A0A8I5Y8Y4_RAT UniProtKB/TrEMBL
  A6KPS3_RAT UniProtKB/TrEMBL
  A6KPS4_RAT UniProtKB/TrEMBL
  A6KPS6_RAT UniProtKB/TrEMBL
  M0R8S8 ENTREZGENE
  Q5U1W8 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary M0R8S8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Hmgn1  high mobility group nucleosome binding domain 1  LOC100911295  non-histone chromosomal protein HMG-14-like  Data merged from RGD:6494054 737654 PROVISIONAL
2013-03-12 Hmgn1  high mobility group nucleosome binding domain 1  Hmgn1  high-mobility group nucleosome binding domain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100911295  non-histone chromosomal protein HMG-14-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-09-24 Hmgn1  high-mobility group nucleosome binding domain 1  Hmgn1  high mobility group nucleosomal binding domain 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Hmgn1  high mobility group nucleosomal binding domain 1  Hmgn1_predicted  high mobility group nucleosomal binding domain 1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Hmgn1_predicted  high mobility group nucleosomal binding domain 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED