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Gene: C8h3orf18 (similar to human chromosome 3 open reading frame 18) Rattus norvegicus

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Symbol:

C8h3orf18

Name:

similar to human chromosome 3 open reading frame 18

RGD ID:

1307461

Description:

Predicted to be located in membrane. Orthologous to human C3orf18 (chromosome 3 open reading frame 18); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC300990; LOC300990; RGD1307461; similar to g20 protein; similar to RIKEN cDNA 6430571L13 gene; similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein; uncharacterized protein C3orf18 homolog; uncharacterized protein LOC300990

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	116,891,081 - 116,901,122 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	116,891,297 - 116,901,120 (+)	Ensembl				GRCr8
mRatBN7.2	8	108,012,638 - 108,022,050 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,012,638 - 108,022,461 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,639,405 - 113,648,824 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	111,838,579 - 111,847,998 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,681,369 - 109,690,788 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,094,046 - 116,104,257 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,094,851 - 116,104,664 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,451,194 - 115,460,591 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,581,375 - 112,591,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,322,450 - 107,331,846 (+)	NCBI		Celera
RGSC_v3.1	8	112,603,000 - 112,639,212 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amiodarone (ISO)

antirheumatic drug (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

Cuprizon (EXP)

Dibutyl phosphate (ISO)

diuron (ISO)

doxorubicin (ISO)

furan (EXP)

GSK-J4 (ISO)

hydrogen peroxide (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

temozolomide (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C8h3orf18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	116,891,081 - 116,901,122 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	116,891,297 - 116,901,120 (+)	Ensembl				GRCr8
mRatBN7.2	8	108,012,638 - 108,022,050 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	108,012,638 - 108,022,461 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	113,639,405 - 113,648,824 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	111,838,579 - 111,847,998 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	109,681,369 - 109,690,788 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	116,094,046 - 116,104,257 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	116,094,851 - 116,104,664 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	115,451,194 - 115,460,591 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	112,581,375 - 112,591,068 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	107,322,450 - 107,331,846 (+)	NCBI		Celera
RGSC_v3.1	8	112,603,000 - 112,639,212 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

C3orf18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	50,558,025 - 50,574,700 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	50,558,025 - 50,573,568 (-)	Ensembl			hg38	GRCh38
GRCh37	3	50,595,456 - 50,608,458 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	50,570,466 - 50,580,186 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	50,570,466 - 50,580,186	NCBI
Celera	3	50,568,268 - 50,581,264 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	50,651,400 - 50,664,389 (-)	NCBI		HuRef
CHM1_1	3	50,547,698 - 50,560,694 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	50,587,914 - 50,604,586 (-)	NCBI		T2T-CHM13v2.0

6430571L13Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	107,217,839 - 107,226,882 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	107,217,801 - 107,229,621 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	107,340,640 - 107,349,683 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	107,340,602 - 107,352,422 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	107,242,971 - 107,252,014 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	107,198,741 - 107,207,784 (+)	NCBI		MGSCv36	mm8
Celera	9	106,946,564 - 106,955,769 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	58.0	NCBI

CUNH3orf18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	2,339,628 - 2,348,026 (-)	Ensembl
ChiLan1.0	NW_004955532	2,339,628 - 2,349,324 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100970098
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	50,538,011 - 50,547,794 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	50,541,197 - 50,552,569 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	50,483,483 - 50,493,267 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	51,720,849 - 51,730,632 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	51,720,849 - 51,730,632 (-)	Ensembl			panPan2	panpan1.1

C20H3orf18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	38,801,245 - 38,811,719 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	38,803,299 - 38,808,728 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	38,720,630 - 38,730,997 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	39,155,560 - 39,165,687 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	39,155,476 - 39,164,053 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	38,523,464 - 38,533,585 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	38,927,250 - 38,940,619 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	39,206,995 - 39,217,131 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH3orf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	65,314,256 - 65,323,395 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	2,073,695 - 2,083,920 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	2,074,753 - 2,083,888 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C13H3orf18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	33,036,900 - 33,045,596 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	33,036,889 - 33,045,704 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	36,240,837 - 36,251,155 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C22H3orf18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	11,942,833 - 11,954,839 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	11,942,554 - 11,952,047 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	155,032,729 - 155,042,779 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH3orf18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	4,396,043 - 4,404,497 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	4,396,043 - 4,404,527 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C8H3orf18
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	98,655,834 - 98,663,524 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C8h3orf18
70 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	292
Count of miRNA genes:	180
Interacting mature miRNAs:	227
Transcripts:	ENSRNOT00000021188
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	111249511	117802327	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	161	91	90	59	85	59	6	348	184	11	138	81	91	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063265240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224195	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021188 ⟹ ENSRNOP00000021188

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	116,891,297 - 116,901,120 (+)	Ensembl
mRatBN7.2 Ensembl	8	108,012,638 - 108,022,461 (+)	Ensembl
Rnor_6.0 Ensembl	8	116,096,458 - 116,104,664 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084120 ⟹ ENSRNOP00000070227

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	116,094,851 - 116,104,257 (+)	Ensembl

RefSeq Acc Id:

NM_001106854 ⟹ NP_001100324

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,891,310 - 116,900,709 (+)	NCBI
mRatBN7.2	8	108,012,651 - 108,022,050 (+)	NCBI
Rnor_6.0	8	116,094,851 - 116,104,257 (+)	NCBI
Rnor_5.0	8	115,451,194 - 115,460,591 (+)	NCBI
RGSC_v3.4	8	112,581,375 - 112,591,068 (+)	RGD
Celera	8	107,322,450 - 107,331,846 (+)	RGD

Sequence:

show sequence

TAATACTAGCTGATTCCTGCTCGCTCGCAAGGCGGACCTTACTTGAGTCGGACCTGTCGCCCCC
TACGCCCGGGCCTGGGTGTTCCCCGCGCCCACGCCTCCTGCCCGTCGCTACCACCCTTAGCTTC
TCAGACTGAGCTCGGCGCCCCGGAGAGGATTAAGTCTGCCCCTTCTGCAGCACGGCTAAGACTC
ATTCCCACCCCGCTTTACCCAAGACCCACAGAAGCTGTGTGATCTCCCATCCTCTGCTTCCAAA
ATAGGAGGGAAATAGGTGTTTCAAAAACTGAGAAAGGCAGGGGTCTCCTGGTAAGAATTTGGCT
GTGCCAGTGGTCGTCACCGTGGTGGGAACGACAGCCTTGGACACTCCTAGCATCAGAAATCAGT
GGGCAAGTTGACTGAGCACTGGCTGTCTCCCAGCATCAGCATGAACTCCAGGGTCCCAGCTACT
CAGAGCTGGTTCAGCAGCCACCCGCCCACCACTGAGCCTGACTTGGAGCCTGCCACCGAAGGCT
CTACCACAGAGACCGCCACCCTCAGCCCCGAAACCACAAGCTTCAATGACACCAGAATGCCTGA
TATGGCAGGCGGTACAGCTGGTGTGGGTACCATGCTTCTGTCTTTTGGGATCATCACAGTGATT
GGTCTGGCTGTGGCCATGGTTTTATACATCAGGAAGAAGAAGAGGCTGGAGAAGTTACGCCACC
AGCTCATGCCTATGTACAACTTTGACCCCACGGAGGAGCAAGACGAACTGGAGCAGGAACTACT
GGAGCACGGACGAGATGCAGCCTCCCTGCAGGCTGCTGCCTCCCTGCAGGCCACACAGGGCAAG
AGCACTCTCCCTTCCCAGGGCCCACTGCAGAGGCCCAGTAGGCTGGTGTTTACCGACGTAGCCA
ATGCCATCCACGCGTGAGAGGCCCGAGAACAAGCCTGGACCTCTTACAAAAGACAACTGCCACG
GTGCCGGCAGCGCTGCCCACTTCCTGACTGTCAAGACCTATTCTCAGGACCAGAGCCATCACCA
CCACTGAAGCCGGAAAGGGCTGCGACAGACCCCAGCTGTGCTGAGACCCCGCCCACTGACTCTC
AAGCTCTCGGAGAGAGTCCTGACCAGGCTAGTCATCTGGCCACTGACTTCTGAACCCATGGCTC
TGGCACAGAAGGCAGCCTTTATGCAGGAAGACAAGAGCCACTGCCGGTTTCCTGGTCTCTGGTA
TCCCTTGCATCAAGGTCTGCTTCTCTGATGGGGCGGAAGAGCACAAGCTTGAAGGGGAGTGACT
TTTTTTTTTTTAAGCTGTAGCCTTTTCTAGGGTAGAGAGAGAGGCAAACAGCCAGATGACTGGG
ACAGGGCAGGGCACTTTTTTTGTTTATTTGTTTTGTTTTGTTTTGTTTTGTGGGTGTGGGGAGG
GGAGGAAGAGTTCATTTTATTTTACTTTCGAGACAGGGTCTTGGCTAGCCTGGAAGTTGTAGAC
CAGGCTGGCCTCCGACTCATAGAGATCTACCTGCGTCTACCTCTTTGAGTGCTGGGATTAGAGG
CATGTGCCTCCACATGCAGCTAGAGCAACACCATTTATAAGTCCAAGAGGCCCAGGGAGAGAGC
CGGAAATGCCCAGTAGATGGCCCGGGAAGATATTACGGTGAATGGGTAAGCATGAGGCCTCCCA
GGTCTCTGCCACATCCCTGGCAGCCAAGGTAGCTGCTGAGGAAGATGAAATTGGGAGACTGGGT
ATGGAAAGATGCAACTCCCCGAGATGTGGGGAGTGGCCGCACACAGACAGGTACCTGTTTCATC
ATGAGAGTGAGACAGAGGCTCTCTGCATTGGCTCCACCTTGCAAGCTAATTCCCACCCAATGAT
AGGGAGGGGAGCATTAGCACAGGCTGCCTCCTCTCCGTCAATGCTCAGGGCTACACCACGGAAG
CGAGGAACTACGCTGGGTTCCTCTGTTCACCATGTTTCTTCAGCAGGCTCCAAAAGCTGGGCAC
ACCTGCTTCCGGAAATGGCTCCCTTCCTATAAGGGCTTCTGGGAGATGCTGCTGGCCTAAAGGT
GGTCACAGGCCAGAAGCTTGTAGGAAAACTATGGTTACCCGAAAGGGAGTGTCCTTTGAGGAAA
AGCCCCAAGGAAGTGAGTCTGATTTTAGCTTTTCTCTTCCACTGTATCTGCAGGAAGGGCCACT
CAGAGTTCATGGAATATAGAATAGAGTCTCTGTGTTGGCCTTCCCTCGAAGTCTTGAAGGTGCA
GGACTGACACCAGGGGCATCTGGGCAGAGTAGACCACAAAGACAGGGCGTTTTTTTCTACACTA
GGACAAAGGAACTCTGAGCATGCACGGAGTCGTGTCCCCAACTTCACTGTCATCCCCTGGTTAG
AGGGGATGTGGGGGTGGACATGTGCTTTGGGCAGATATCACATGTCAGGAGGTGAGGGGCTAGG
AGGATCCCTCAGGGAAGGTTCTGGTTTTATTCCTGCCTCTGGCTGCTATAAATATGTTCGCACT
CCAGCAACTGGAAAGCTGTGAGTAATTTAGGATGCACAAAGCTGTAATTTAACTCCAGCATCTC
ACTGTGCGAGAGCATTAAAGATGTAATTAAGATGTTT

hide sequence

RefSeq Acc Id:

XM_006243733 ⟹ XP_006243795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,891,081 - 116,901,122 (+)	NCBI
mRatBN7.2	8	108,012,638 - 108,020,420 (+)	NCBI
Rnor_6.0	8	116,094,046 - 116,103,091 (+)	NCBI
Rnor_5.0	8	115,451,194 - 115,460,591 (+)	NCBI

Sequence:

show sequence

AACCTGGGCAACATAGTATCAGGCTATCCTGGGCAACAGTGTTTAGGTGACTGGGTGGGGGTAG
CTTTAAGTGGTTGGGGGGGGGTTCAGCTCTGGGGTTTAGGAAATTGGTACTTCTGTTCTGAGAT
AAATTTTGCTGTGAATGAAAGCTATTATGAGAGGTATAGGTGGGCTATCATGCAGATAATTCCA
TTCTGTTCCCAACGCGTCTTCGCACTGAAGAGTCTTCCCCATAGTTGGAGTCATTTACCAAAAC
GCCCTTTCATCAGAGTTCCTATAAGGCAGGAAACTGAGACAAAAGAAGAGAAGCAATTTGCTGC
TCAAGGTCATAAGCTCAATAGAAGATCAAACTGAGTTCGTTTTAGGTTTCAAATACTCCAAGTC
TGGTGGTGCTCTTATCAAATCTCTGTACCTATATTTTTTTGCTTACAAGTCTGCCCCAGTGCGG
GTGGAGCTGTCCGGGAGCCAGAATTCTGGCCCAGAAAGGGCCTGGCTACCTACGGTCCACTGCC
CAACTTCCGGCAGGCCACCAGGGTTAGAGGTATTCTCAGAGAATCTCTTTTAGCTGTCCGGTTT
CAGCTCCAAGCTCCCGCTGGGAGCGGAGCTATATCCGAGCGACAGGCGAGTGAGCCAATGCTGG
TCGGCCTTTAGGCGCGGCAGCCAATCAAGGTCCGGGGGCGCGGAGAGGGCCGGGAGGCAAGGTA
CTCCGGCTCCTGGGGATCCCCCGAGGCTGCTCATCTCAGCCCCACCCCCTCCGTGGTCGGGGCC
CAGCCCACCCCAGCTCAGGTTGTCAGCCGGCGCAGGCTAATACTAGCTGATTCCTGCTCGCTCG
CAAGGCGGACCTTACTTGAGTCCGACCTGTCGCCCCCTACGCCCGGGCCTGGGTGTTCCCCGCG
CCCACGCCTCCTGCCCGTCGCTACCACCCTTAGCTTCTCAGACTGAGCTCGGCGCCCCGGAGAG
GATTAAAACTGAGAAAGGCAGGGGTCTCCTGGTAAGAATTTGGCTGTGCCAGTGGTCGTCACCG
TGGTGGGAACGACAGCCTTGGACACTCCTAGCATCAGAAATCAGTGGGCAAGTTGACTGAGCAC
TGGCTGTCTCCCAGCATCAGCATGAACTCCAGGGTCCCAGCTACTCAGAGCTGGTTCAGCAGCC
ACCCGCCCACCACTGAGCCTGACTTGGAGCCTGCCACCGAAGGCTCTACCACAGAGACCGCCAC
CCTCAGCCCCGAAACCACAAGCTTCAATGACACCAGAATGCCTGATATGGCAGGCGGTACAGCT
GGTGTGGGTACCATGCTTCTGTCTTTTGGGATCATCACAGTGATTGGTCTGGCTGTGGCCATGG
TTTTATACATCAGGAAGAAGAAGAGGCTGGAGAAGTTACGCCACCAGCTCATGCCTATGTACAA
CTTTGACCCCACGGAGGAGCAAGACGAACTGGAGCAGGAACTACTGGAGCACGGACGAGATGCA
GCCTCCCTGCAGGCTGCTGCCTCCCTGCAGGCCACACAGGGCAAGAGCACTCTCCCTTCCCAGG
GCCCACTGCAGAGGCCCAGTAGGCTGGTGTTTACCGACGTAGCCAATGCCATCCACGCGTGAGA
GGCCCGAGAACAAGCCTGGACCTCTTACAAAAGACAACTGCCACGGTGCCGGCAGCGCTGCCCA
CTTCCTGACTGTCAAGACCTATTCTCAGGACCAGAGCCATCACCACCACTGAAGCCGGAAAGGG
CTGCGACAGACCCCAGCTGTGCTGAGACCCCGCCCACTGACTCTCAAGCTCTCGGAGAGAGTCC
TGACCAGGCTAGTCATCTGGCCACTGACTTCTGAACCCATGGCTCTGGCACAGAAGGCAGCCTT
TATGCAGGAAGACAAGAGCCACTGCCGGTTTCCTGGTCTCTGGTATCCCTTGCATCAAGGTCTG
CTTCTCTGATGGGGCGGAAGAGCACAAGCTTGAAGGGGAGTGACTTTTTTTTTTTTAAGCTGTA
GCCTTTTCTAGGGTAGAGAGAGAGGCAAACAGCCAGATGACTGGGACAGGGCAGGGCACTTTTT
TTGTTTATTTGTTTTGTTTTGTTTTGTTTTGTGGGTGTGGGGAGGGGAGGAAGAGTTCATTTTA
TTTTAC

hide sequence

RefSeq Acc Id:

XM_063265239 ⟹ XP_063121309

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,891,101 - 116,901,122 (+)	NCBI

RefSeq Acc Id:

XM_063265240 ⟹ XP_063121310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	116,891,102 - 116,901,122 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100324	(Get FASTA)	NCBI Sequence Viewer
	NP_001420713	(Get FASTA)	NCBI Sequence Viewer
	XP_006243795	(Get FASTA)	NCBI Sequence Viewer
	XP_063121309	(Get FASTA)	NCBI Sequence Viewer
	XP_063121310	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77258	(Get FASTA)	NCBI Sequence Viewer
	EDL77259	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021188
	ENSRNOP00000021188.3

RefSeq Acc Id:	NP_001100324 ⟸ NM_001106854
- UniProtKB:	D4A9R5 (UniProtKB/TrEMBL), A6I2W8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSRVPATQSWFSSHPPTTEPDLEPATEGSTTETATLSPETTSFNDTRMPDMAGGTAGVGTMLL SFGIITVIGLAVAMVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRDAASLQAAA SLQATQGKSTLPSQGPLQRPSRLVFTDVANAIHA hide sequence

RefSeq Acc Id:	XP_006243795 ⟸ XM_006243733
- Peptide Label:	isoform X2
- Sequence:	show sequence MNSRVPATQSWFSSHPPTTEPDLEPATEGSTTETATLSPETTSFNDTRMPDMAGGTAGVGTMLL SFGIITVIGLAVAMVLYIRKKKRLEKLRHQLMPMYNFDPTEEQDELEQELLEHGRDAASLQAAA SLQATQGKSTLPSQGPLQRPSRLVFTDVANAIHA hide sequence

Ensembl Acc Id:

ENSRNOP00000021188 ⟸ ENSRNOT00000021188

Ensembl Acc Id:

ENSRNOP00000070227 ⟸ ENSRNOT00000084120

RefSeq Acc Id:	XP_063121309 ⟸ XM_063265239
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063121310 ⟸ XM_063265240
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9R5-F1-model_v2	AlphaFold	D4A9R5	1-162	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307461	AgrOrtholog
BioCyc Gene	G2FUF-29208	BioCyc
Ensembl Genes	ENSRNOG00000015718	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021188	ENTREZGENE
	ENSRNOT00000021188.7	UniProtKB/TrEMBL
InterPro	C3orf18-like	UniProtKB/TrEMBL
KEGG Report	rno:300990	UniProtKB/TrEMBL
NCBI Gene	300990	ENTREZGENE
PANTHER	PTHR15868	UniProtKB/TrEMBL
	SIMILAR TO RIKEN CDNA 6430571L13 GENE_ SIMILAR TO G20 PROTEIN	UniProtKB/TrEMBL
PhenoGen	C8h3orf18	PhenoGen
RatGTEx	ENSRNOG00000015718	RatGTEx
UniProt	A6I2W8	ENTREZGENE, UniProtKB/TrEMBL
	D4A9R5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C8h3orf18	similar to human chromosome 3 open reading frame 18	RGD1307461	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein	Symbol and Name Changed	1299863	APPROVED
2008-04-30	RGD1307461	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein	RGD1307461_predicted	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1307461_predicted	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein (predicted)	LOC300990_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC300990_predicted	similar to RIKEN cDNA 6430571L13 gene; similar to g20 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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