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Gene: Ccdc88c (coiled-coil and HOOK domain protein 88C) Rattus norvegicus

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Symbol:

Ccdc88c

Name:

coiled-coil and HOOK domain protein 88C (Ensembl:coiled-coil domain containing 88C)

RGD ID:

1307429

Description:

Predicted to enable several functions, including G-protein alpha-subunit binding activity; PDZ domain binding activity; and dynein light intermediate chain binding activity. Predicted to be involved in several processes, including apical constriction; negative regulation of canonical Wnt signaling pathway; and protein destabilization. Predicted to act upstream of or within with a positive effect on positive regulation of JNK cascade. Predicted to act upstream of or within several processes, including mucociliary clearance; negative regulation of microtubule depolymerization; and respiratory basal cell differentiation. Predicted to be located in cell junction. Predicted to be active in apical junction complex; centrosome; and cytoplasm. Human ortholog(s) of this gene implicated in hydrocephalus and spinocerebellar ataxia type 40. Orthologous to human CCDC88C (coiled-coil domain containing 88C); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

coiled-coil domain containing 88C; LOC362770; RGD1307429; similar to KIAA1509 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC88C (coiled-coil and HOOK domain protein 88C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ccdc88c (coiled-coil domain containing 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc88c (coiled-coil and HOOK domain protein 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC88C (coiled-coil and HOOK domain protein 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC88C (coiled-coil domain containing 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc88c (coiled-coil and HOOK domain protein 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC88C (coiled-coil domain containing 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC88C (coiled-coil and HOOK domain protein 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc88c (coiled-coil and HOOK domain protein 88C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	VN1R4 (vomeronasal 1 receptor 4)	HGNC	OMA
Homo sapiens (human):	VN1R2 (vomeronasal 1 receptor 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CCDC88C (coiled-coil and HOOK domain protein 88C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc88c (coiled-coil domain containing 88C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc88c (coiled-coil domain containing 88C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ccdc88c (coiled-coil domain containing 88C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Girdin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Girdin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	grdn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	grdn-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc88c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc88c	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	125,899,337 - 126,019,162 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	125,899,526 - 126,018,865 (-)	Ensembl				GRCr8
mRatBN7.2	6	120,169,752 - 120,289,459 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	120,169,738 - 120,289,555 (-)	Ensembl				mRatBN7.2
Rnor_6.0	6	124,905,811 - 125,028,011 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	124,905,808 - 125,027,553 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	134,125,645 - 134,247,201 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	125,178,886 - 125,298,359 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	117,696,139 - 117,817,662 (-)	NCBI		Celera
RGSC_v3.1	6	125,182,632 - 125,302,112 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hydrocephalus (ISO)

spastic ataxia (ISO)

spinocerebellar ataxia 40 (ISO)

Spinocerebellar Ataxias (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic acid (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

caffeine (ISO)

calcitriol (ISO)

choline (ISO)

cisplatin (ISO)

clobetasol (ISO)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dicrotophos (ISO)

dimethylarsinic acid (ISO)

dorsomorphin (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

hydroquinone (ISO)

indometacin (ISO)

L-methionine (ISO)

maneb (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylarsonic acid (ISO)

nickel atom (ISO)

nickel sulfate (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

potassium chromate (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apical constriction (IEA,ISO)

cilium movement (ISO)

cilium organization (ISO)

cytoplasmic microtubule organization (IBA)

cytoskeleton-dependent intracellular transport (IBA,IEA)

microtubule bundle formation (ISO)

mucociliary clearance (ISO)

negative regulation of canonical Wnt signaling pathway (IEA,ISO)

negative regulation of microtubule depolymerization (ISO)

non-canonical Wnt signaling pathway (IEA,ISO)

positive regulation of JNK cascade (ISO)

protein destabilization (IEA,ISO)

respiratory basal cell differentiation (ISO)

signal transduction (IEA)

small GTPase-mediated signal transduction (IEA,ISO)

Wnt signaling pathway, planar cell polarity pathway (ISO)

Cellular Component

apical junction complex (IEA,ISO)

cell junction (IEA,ISO)

centrosome (IBA)

cytoplasm (IBA,IEA,ISO)

extracellular region (IEA)

Molecular Function

dynein light intermediate chain binding (IBA)

frizzled binding (IEA,ISO)

G-protein alpha-subunit binding (IEA,ISO)

guanyl-nucleotide exchange factor activity (IEA,ISO)

microtubule binding (IBA,IEA,ISO)

PDZ domain binding (IEA,ISO)

protein binding (ISO)

protein dimerization activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14750955	PMID:25062847	PMID:26126266	PMID:30948426

Genomics

Comparative Map Data

Ccdc88c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	125,899,337 - 126,019,162 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	125,899,526 - 126,018,865 (-)	Ensembl				GRCr8
mRatBN7.2	6	120,169,752 - 120,289,459 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	120,169,738 - 120,289,555 (-)	Ensembl				mRatBN7.2
Rnor_6.0	6	124,905,811 - 125,028,011 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	124,905,808 - 125,027,553 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	134,125,645 - 134,247,201 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	125,178,886 - 125,298,359 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	117,696,139 - 117,817,662 (-)	NCBI		Celera
RGSC_v3.1	6	125,182,632 - 125,302,112 (-)	NCBI
Cytogenetic Map	6	q32	NCBI

CCDC88C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	91,271,323 - 91,417,820 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	91,271,323 - 91,417,844 (-)	Ensembl			hg38	GRCh38
GRCh37	14	91,737,667 - 91,884,164 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	90,807,420 - 90,953,886 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	71,786,122 - 71,932,885 (-)	NCBI		Celera
Cytogenetic Map	14	q32.11-q32.12	NCBI
HuRef	14	71,913,832 - 72,060,619 (-)	NCBI		HuRef
CHM1_1	14	91,675,205 - 91,822,288 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	85,496,797 - 85,643,060 (-)	NCBI		T2T-CHM13v2.0

Ccdc88c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	100,877,778 - 100,995,610 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	100,877,782 - 100,995,315 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	100,911,519 - 101,029,351 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	100,911,523 - 101,029,056 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	102,150,910 - 102,267,193 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	101,313,750 - 101,430,033 (-)	NCBI		MGSCv36	mm8
Celera	12	102,139,914 - 102,256,241 (-)	NCBI		Celera
Cytogenetic Map	12	E	NCBI
cM Map	12	51.11	NCBI

Ccdc88c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955438	13,585,469 - 13,708,170 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC88C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	92,421,170 - 92,567,790 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	91,637,679 - 91,784,296 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	71,897,602 - 72,044,242 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	91,244,434 - 91,389,646 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	91,244,434 - 91,393,715 (-)	Ensembl			panPan2	panpan1.1

CCDC88C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	62,123,934 - 62,245,485 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	62,143,029 - 62,245,491 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	61,701,555 - 61,822,949 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	62,395,697 - 62,517,160 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	62,396,575 - 62,517,106 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	62,076,207 - 62,197,551 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	62,125,945 - 62,247,414 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	62,455,092 - 62,576,740 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc88c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	13,666,825 - 13,780,464 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	18,289,651 - 18,402,115 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	18,288,504 - 18,402,125 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC88C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	112,917,534 - 113,045,682 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	112,917,436 - 113,030,442 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	119,489,813 - 119,618,584 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC88C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	69,035,317 - 69,185,353 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	69,034,992 - 69,184,800 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	56,288,470 - 56,435,028 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc88c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	11,215,357 - 11,336,413 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	11,215,274 - 11,336,535 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Ccdc88c
733 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	250
Count of miRNA genes:	167
Interacting mature miRNAs:	188
Transcripts:	ENSRNOT00000005908, ENSRNOT00000006054, ENSRNOT00000071267
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
2293088	Iddm28	Insulin dependent diabetes mellitus QTL 28	5.21		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	68767270	135411972	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
61329	Eae9	Experimental allergic encephalomyelitis QTL 9	3.7		body mass (VT:0001259)	change in body weight (CMO:0002045)	6	84490437	129490437	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

D6Rat7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	120,247,200 - 120,247,348 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,985,190 - 124,985,337	NCBI	Rnor6.0
Rnor_5.0	6	134,205,024 - 134,205,171	UniSTS	Rnor5.0
RGSC_v3.4	8	512,321 - 512,779	RGD	RGSC3.4
RGSC_v3.4	6	125,255,697 - 125,255,844	UniSTS	RGSC3.4
Celera	6	117,775,397 - 117,775,544	UniSTS
RGSC_v3.1	6	125,259,444 - 125,259,591	RGD
RH 3.4 Map	6	860.4	UniSTS
RH 3.4 Map	6	860.4	RGD
SHRSP x BN Map	6	77.2698	UniSTS
SHRSP x BN Map	6	77.2698	RGD
Cytogenetic Map	6	q32	UniSTS

D6Hmgc1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	125,989,083 - 125,989,400 (+)	Marker Load Pipeline
mRatBN7.2	6	120,259,512 - 120,259,829 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,997,734 - 124,998,050	NCBI	Rnor6.0
Rnor_5.0	6	134,217,288 - 134,217,604	UniSTS	Rnor5.0
Celera	6	117,787,633 - 117,787,949	UniSTS
Cytogenetic Map	6	q32	UniSTS

BF399938

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	120,230,680 - 120,230,843 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,968,532 - 124,968,694	NCBI	Rnor6.0
Rnor_5.0	6	134,188,366 - 134,188,528	UniSTS	Rnor5.0
RGSC_v3.4	6	125,238,616 - 125,238,778	UniSTS	RGSC3.4
Celera	6	117,758,716 - 117,758,878	UniSTS
RH 3.4 Map	6	859.9	UniSTS
Cytogenetic Map	6	q32	UniSTS

BE117429

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	120,183,175 - 120,183,325 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,921,034 - 124,921,183	NCBI	Rnor6.0
Rnor_5.0	6	134,140,868 - 134,141,017	UniSTS	Rnor5.0
RGSC_v3.4	6	125,191,118 - 125,191,267	UniSTS	RGSC3.4
Celera	6	117,711,362 - 117,711,511	UniSTS
RH 3.4 Map	6	859.2	UniSTS
Cytogenetic Map	6	q32	UniSTS

BM387264

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	120,174,773 - 120,174,953 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,912,634 - 124,912,813	NCBI	Rnor6.0
Rnor_5.0	6	134,132,468 - 134,132,647	UniSTS	Rnor5.0
RGSC_v3.4	6	125,182,718 - 125,182,897	UniSTS	RGSC3.4
Celera	6	117,702,962 - 117,703,141	UniSTS
RH 3.4 Map	6	858.9	UniSTS
Cytogenetic Map	6	q32	UniSTS

AU049023

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	120,259,648 - 120,259,801 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	124,997,870 - 124,998,022	NCBI	Rnor6.0
Rnor_5.0	6	134,217,424 - 134,217,576	UniSTS	Rnor5.0
RGSC_v3.4	6	125,268,417 - 125,268,569	UniSTS	RGSC3.4
Celera	6	117,787,769 - 117,787,921	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001065209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039113347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_343096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005506202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005908 ⟹ ENSRNOP00000005908

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	125,899,526 - 125,966,602 (-)	Ensembl
mRatBN7.2 Ensembl	6	120,169,738 - 120,236,932 (-)	Ensembl
Rnor_6.0 Ensembl	6	124,905,808 - 125,027,553 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099776 ⟹ ENSRNOP00000081834

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	125,899,526 - 126,018,865 (-)	Ensembl
mRatBN7.2 Ensembl	6	120,169,738 - 120,289,555 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173133 ⟹ ENSRNOP00000099860

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	125,899,526 - 126,018,865 (-)	Ensembl

RefSeq Acc Id:

XM_017594496 ⟹ XP_017449985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	125,899,337 - 125,955,122 (-)	NCBI
mRatBN7.2	6	120,169,752 - 120,225,403 (-)	NCBI
Rnor_6.0	6	124,905,811 - 124,963,232 (-)	NCBI

Sequence:

show sequence

GGCCTCTTCCCAAGATGGAGTGCAGTGGCCGGACAGGCTTCCATACACTGTGGCGGGACACAGC
CTCCGAAGCATGTGTCCTTGGAGGCTCTGAGGAGAGACCCGAACTGAGAGAAGATAACATCATC
TTAATCGAGACGAAGGCCATGTTGGAGGAACAACTGACTGCCTCCCGGGCTCGCAGCGATAAAG
TCCACGAGCTGGAGAAAGAGAACCTACAGCTGAAATCTAAACTCCATGACTTGGAACTGGATCG
GGACACTGACAAGAAACGGATTGAGGAGCTGCTGGAAGAAAACATGGTTCTGGAGATCGCACAG
AAGCAGAGCATGAACGAGTCGGCCCACCTGGGCTGGGAGCTGGAACAGCTGTCCAAGAACGCGG
ACTTGTCCGACGCCTCCAGGAAATCCTTCGTGTTTGAGCTGAATGAGTGCGCCTCCAGCCGCAT
CCTGAAGCTGGAGAAGGAGAACCAGAGCCTCCAGAGCACCATCCAGGGTCTGCGGGATGCGTCG
CTGGCGCTCGAGGAGAGCAGCCTCAAGTGTGGGGAGCTGGAGAAGGAGAACCAGCAGCTTAGCA
AGAAGATTGAAAAGTTACAAACGCAGCTGGAGAGAGAAAAGCAGAGTAACCAAGACCTGGAGAC
ACTGAGTGAGGAGCTGATTCGAGAGAAGGAACAGCTGCAGAGTGGCATGGAGGCCCTGAAGGCG
GACAGGGCCAGGCAGATAAAAGATCTGGAGCAGGAGAAGGGCCACCTCCACCAAGCTGTGTGGT
CACTGCGGGAGAGACCGCAAGTCAACAGCATGAAGGATGTGGAGAAGGAAAACAGAACCCTTCA
CCAGGCTGTGACCGAGGCAGGCAGCAAGCTCAGCCAGCTGGAGTCGGAGAAGAAGCAGCTGCAC
CGAGACTTGGAGGAGGCCAAGGAGAAGGGAGAGCGCGCAGAGGTGCTGGAGAAGGAGCTGCACC
GGCTGGAGAAAGAGAACGAGCAGCTGACCAAGAAGGTGACCTCCCTGAAGACGGTCACTGAAAA
GGTCGAGGCCCTGGAGCATGAGAGCCAGGGTCTGGAGCTGGAAAACCGGACGCTGAGAAAGTCC
TTGGACACCCTGCAGAACGTGTCTGTGCAGCTCGAGGGCCTGGAGAGGGACAACAAGCAGCTGG
ATCAGGAGAACCGGGAGCTGCGCAAGATGGTGGAGGCCATGCGCTTCACCAGCGCCAAGATGGC
GCAGATGGAGACGGAGAACCAGCAGCTGGAGAGGGAGAAGGAGGAGCTGCGCAGGAATGTGGAG
ATGCTGAAGACCTTAAGCAAGAAGTCGGAGCGCCTGGAGCACAGCTACCAGAGCGTGAGTGCTG
AGAACCTGCAGCTGCAGCACAGCCTGGAGAGCAGCAACCACAAGTCTCAGGCCCTGCAGAGGGA
GCTGAGCGAGCTGGAGGCTGAGCGCCAGGCCCTGAAGCGAGACCTAGAAACTCTGCAGCTCGCC
AACAAACAGCTCGAGGGGGCTGAGAAAGACAGGAAGGCCCTGGAGCAGGAGGTGGCCCAGCTGG
AGAAGGACAAGAAACTGCTGGAGAAAGAGACCAGACGCCTATGGCAGCAGGTGGAGCTCAAGGA
CGCTGTCCTGGATGACAGTGCGGCCAAGCTGTCGGCGGCCGAGAAGGAAAGCCGCGCGCTGGAC
AAGGAGCTGGCCCGCTGCCGGGATGCGGCCAGCAAGCTGAAGGAGCTGGAGAAGGACAACAGGG
ACCTCACCAAGCAGGTCACCGTGCACACGAGGACGCTCACCACCCTGAGAGAGGACCTGGTGCT
GGAGAAACTGAAGAGCCAGCAGCTGACCAGCGAGCTGGACAAACTGAGCCAGGAGCTGGAGAAG
GTCGGCCTCAGCAAGGAGCTGCTGCTGCAGGAGGATAACAGTCATGGTGACACAAAAGGCAAGA
TTTGGGAAAGCAAAAACGAATCCTCATTGAAAACAACACTAGCTATGAAAGAAGAAAAGATTGT
GTTTTTGGAGGCACAAGTGGAAGAGAAAGAGAGCTTGAATCACCAACTCCAGATCGAGCTGCAG
ATGGTAAAGAAAGAATGTGAGCAGCTCAGGAAGACCCAGGAGGATGGAACCCAGGCGCAGAACG
TGCAGAAGCACGCTCCAGACAAGGTCACCAGTCACCAAGAGAAGGAGGCCTGGGGACCCAGCCA
CAAAGAGGCCACCATGGAGCTACTCCGTGTGAAGGACCGGGCCATCGAGCTGGAGCGCAGTAAC
GCAGCTCTTCAGGCGGAGAGGCAGTTGCTGAAGGAGCAGCTGCAGCACCTGGAGACTCAGAACG
TGTCCTTCAGCAGCCAGATCCTGACGCTACAGAAGCAGAGCGCCTTCCTACAAGAGCACACCAC
CACGCTGCAGACGCAGACTGCAAAGCTGCAGGTGGAGAATTCCACACTGAGCTCCCAGAATGCA
GCGCTCAGTGCACAGTACACCATGCTACAGAGCCAGCACGCCGCCAAGGAGGCGGAACACGAGA
GTCTGCAGCAGCAGCAGGAGGAGCTGGCGGCTGTCTATGAAGCCTTGCTTCGGGACCACGACCG
CCTGGGTGCCCTGTACGAGCGCCAGTCCTCAGAGTACGAGGCCCTCATCTGCCAGCACAGCTGT
CTGAAGACGTTGCACAGGAACCTGGAGCTGGAACACAAGGAGCTTGGAGAGAGGCACGGAGACT
TACAGAAGCGTAAGGCAGAACTGGAGGAGCTGGAAAAAGCCCTGAGCACTGAGCGGGAGGTTCT
GCAGCAGGAACAGAGGACCAGTGCCATCGCCACGAGCGAGAACCAGAGGCTGCGAGGAGAGCTG
GACAGGATCAGTTTCCTGCACCACCAGCTGAAGGGGGAATATGAGGAGCTGCACGCCCACACCA
AGGAGTTGAAAACCTCGCTGAACAACTCTCGGCTGGAGCTGAACCGCTGGCAGGCACGCTTTGA
CGAGCTGAAAGAGCAGCACCAGAACATGGACATCTCTCTGACCAAGCTGGACAACCACTGTGAG
CTGCTCTCCCGTCTCAAGGGGAACTTAGAGGAGGAGAATCAGCACCTGCTGAGCCAGATCCAGC
TGCTGAGCCAGCAGAACCAGATGCTTCTAGAACAGAACATAGAGAGCAAGGAGCAGTACCACGA
GGAACAGAAGCAGTACATAGACAAGTTAAACGCCTTACGGAGACACAAGGAAAAACTGGAAGAA
AAAATCATGGATCAGTACAAGTTCTATGACCCTGCTCCAAAGAAGAAGAACCACTGGATCGGAG
CCAAAGCCCTAGTCAAACTTATCAAGCCAAAGAAAGAAGGCTCCAGAGAACGGTTAAAATCCTC
GGATAGCCCCCCCTGGCAGCTAGAGTCCTCAGACCCCGCCTCACCACCTGCCTCCCAGACCCTC
AGACCACAGACGGAGAACTCTGACAACCCCCCATCGGGCTCAAACTGCACAGAAGAGAGAGACA
CCCACAACGGGCCTGTGGGGAAAGGCCCCGGGGATCTAAAACCAAAACGAGGGTCCCCACGTGG
AGGCACTGTTGACCGCACGGACACCTCCACTGACCCAGCTGTGAAGTCCTGGCCCTCAGAGCCT
GGCTCCCGGAGTTTTTCGACCTCAGCCACCACGGCAGCCCTTTCTAGCTCCACTCCTATCCTTA
AACACCTAGGCCGCACCAAAGGTTGTAACTCAGATGACAACCTCTGCGAGCCATCCCCCGAGCC
CGAGGGCCCCTACCACAGGCAGCAGGTGTCTCGGCCAAACAGCTTGGAGAGCAGCAGGAGCACA
TCCAGCAACAGCTCGCCTTTGAGCCTCAAGGGTTCCTCCGACCATCTGCACAGCCGGTGTGAGA
GCTTCAGCAGTGCAGACCTGATCCCCAGCAGGGACCCTACCACACTGTCCCGGGATGGCAGCAC
CCCAGGACGTGGTCTTCTCGGCCGCCATGAGTACCCTCCACCCCGGAATGGGCCTGTCCCCCAG
GAGAATATCCAGAAGAAGGGTGCAGCTTCAGCCCACACTGGGGTGCGACCCCACTCAGCCTCTC
CCAGCAGTGAGATGGTCACCTTGGAGGAATTTTTAGAGGAGAGTAACCGTGGCTCTCCTACCCA
TGATACGCCCAGCTGCCGTGATGACCTGCTTAGTGACTACTTCCGAAAGGCCCATGATCCCCCA
GCCATGGGAGGCCAGCCAGGACCACCAACTAGGAAAGAAGGAGCCAAGATGCCCACCAGCTTCG
TGGCTCCCACCGTCAAGATGCCAGTCAGCACCTCTGAGGGGCAGCAGCTGAAGCCAGGGCATTA
TGTAAAGCCCAACCTGAGACCATCTGAAGCCGAGGCTCTGGCTGGGATCCCTTCAAGACAGGTC
CAGCCTCCCCAGAGCCTGTCTCTGGGTAGACCCAGGCAAGCCACAATGTCCCAAACTTGTCACG
TGCCTGTCAGCCGAAGTGCGTCTCTGAGCAGAGCTTTCAGCCTGGCTTCAGCTGACCTCCTCAG
GGCCAGTGGGCCAGAAGCCTGCAGGCCAGAGTCTCCTCAGAAGCCAGGGTGTCCTGAGGCTGTA
GGAACCAGAGAGACAAGCGGCCACAGCCTGCAAGGCTCCCATATCCTACCCCGGGAGAGGACTC
CAATCGTAGGAAAAGCTGACAGTTCCTCTCCAGGCCCAGGCACCCGAGGACGGCCACTGGACAC
AAGGCGCTTCTCCCTGGCTCCCCCGAAGGAAGAGAGGCTGGCCCCCCTACAGCAGTCTGCCACA
GCCCCAGCCCTTGCTACTGGATGTGGCAGTGGTAGCAACCCCCAGATCCAGCACTTTTCTCCCA
CTGTGGCTCCTGCGGTCAGGACAAAACCCAAAGGGCCACAGCACTCAGGGGAGGTGGCCACTGT
AGCTCCTGTGCGTCCAGGGCTTGGCACCTCAGAGGGAGATGGGGGCCCAGGGCATGGTTACAGC
GAGGGGCTCCTCACCAAAAGCCCTGGTAGGTCTTCTGACTTGGCTCCCCATGTCAAAAGGGGCC
CTGATGACTTCAGTCAAGGGAGCAGCTCAAAGAGCACACCAGCATCCCCAGAGCCGGGTGGGGA
CCCACAGACAGTGTGGTATGAATACGGTTGTGTGTGACTCACGTGGCGGATCTGCAGCTTGCAA
ACGCTAGGCTGCTGGTTATGCCTTCTGATTACAACGGCCTTTTCCCCTGCTGGCCTGTGGTGTT
GGGGGAGGGGGTATAGAATGAGGAGTGGGGTTCCCGCACACTCATCCGATTGGCTGATGGAAAC
ACCGTGCCAAGCCCTAAGAGGATTGCCCTCCAGGGTCTGTAACTTCTATAGCTGCAGCTCCCAG
CAGCTGGTATCTTACGGACAAATCAGTTTAGCATGGGGACCGCTTAGGAGTCAGTGGCACAACG
AATTTACCCAGAAACAGACACTACTTGAGTAGGAATACTCCTCTGCAACCTGTCGACCTCCACT
AAAGAGCGAGTGCACGTGTGAATACACACACATGTACTAGGCTCACAAAGCTAAGCCCTGGTGG
GTCTGGAAACCACTCCTGCCTAAAAGCCATTGGTCCTAGGAAAATCTTACTCTGGGAAAGGATT
TGCAGAGTAGGGGGAAAGCCTGCAGCAGGGCTGGCTGTTAAACCCAGGACCGCCTGCCATCCCA
TTCCTGAGGTCCAAGCACTTCCCTTTACAGCAGACCAAGCTTTAGGATCAGCCACAGGGTGCTT
GGTAGCTGGCTCATGGGCCCTGCCTAGTAGACGTTAAGGCTGCCTAGGAACCAGCCTTTTGGGA
CTTCCTAGACTACTTTACTACAAACACTGGATCTGCCAGGCCTTGACTGTGAGGCAGTGAGCCC
TGAGTGTCCCAGGCTGGCAGGAGTAGTTACTACACAGAAGGAAGGCCAAAGCCACATTCACCTG
GTAATGTGGCGGCTGCACCCAGCCTTCCTTGGCTCAGACGGAACTTTTTTTTTTTCTGAATAAC
TTTTTGGGGGTAGAAACCAAATTTCTTTAATATATATATACACATATGGATAACTATGTATACA
CACTTTGGGGGCCTATTTATGTTCCATTGTAAGTCATTCTTTGTCTGTCTGGTCTGCTTCCTGA
TGTGTTTTGTTTCCTATTGTAATGGTGCTTTTCCTGGGATGGACTAAACGGTTTATTTTCTGTT
CTGATTAATGTGCTGAGAAAGAAACGGGAGACCTTGAATGTTGACAGGATCCATGGTGAGGGTG
TTTGGGTTATGTGTTAAATAGCCATTCGTTCTGGAAGACCAGGACGGGGCCATAATAAAGTGGA
AAGGACTGTGACTGGGCCCTGGTTTTGTTCAGAGAACGCTGCCTGCATGCAGAGGGCTACGGGC
TTTAGGCTCCCACACCTCAGGCTCCTCCGGCTGTGGAAGTCCGTTGTTGGCTAGGTCATTAGGT
GTATGAAGCTGCACAGCCTTTAAGAGGAATGTAAAGGACAGAGCTGTCCTTGAAGTGATGGCAG
CCCATGGTCCACATCACATTGATTCTGCATCAGGTGAGTTCCCGTTGGGCAGGGGGCTCTGTTC
CTGTCAGGACAGGGTCCCAAAGCTGACAACACTACCAAGGGCTACGCCTTGGAATTGGACCTTA
GGACATCATGCTTAAATCAGTGAAGTAGATGAAATGGGAAAAGGTATATAAGTCTCCCCAGGTG
ACCAAACCTTGTCCAGTTCTCAGGTCCGCCTGATAATCTCAGTTCCCTCTTCCCTCACCAGACT
TCCTGTGTACAGCACTCTTGCCTCCTGGCCCTGCCCTTCCTTCCTGAGTCTCTGCAATCTGTTG
GATCTGGCTGCTTGGTGGGAACTGCTATCCGTGGAGTAGTCACTTGGCAGGCTTCACTCCGTGT
GGCCTTTGTAGGATTTAACACCTGGCCAGGCATGCCTCGTTGTTGGCAGCTTCTGTCTCACGAC
TCTGTCCCTTCTGGGACAGCCCTCCCACATTCATGCTTGCAGGGCTCAACCATCCCCAGAGAGC
CTGTGGGCCGCCCTGAGCTCCCTCAGCCACTTTGCTTCCCTCCACACACGCAATACAATAGACC
TCTTAGGAACTTCAGACACGAAGCCCACCCTCCTGGAACACAACCTCTCATCTCAGTTCCCCAA
ACTCTTCCTCCAGCTCGCACCGTCTGTTGTGTTGTTATAGAAGCCTGAATTTGGTCTTGACTCC
TCAACTGTGTGTAGAGATCATACTAGATCCTTGCCCTTGGCTAGCTCATGCCAGGCCTCATCCT
CCAGTCCTGGGGCCCTAGTTCCGATCTGTCTCTGCCTCCGTTTCCTCGGCGCACTTTAGTTCTG
TCTGATGTAAAGGCTGCTATTAAGTCGACAGTGGCACTAAATCCAAAGGCAGTCTGGTCACTCT
GGTACATTCTCCCTGGGTGACCTTTGCTTTGAAACACTCCGCTCTCTGTGTCTCGGCAGTAGCC
ACACCCTGCGCTCTGCAGACTGAGTCCTGCACACCTGAGGCACACCTAGGTTTCTCATCACCCC
TCACGCCCTGACAAGCTCCTACACATCCACAATTGTAATTACAGGCCATTTCTAGGAGGCGAGG
AGCCGGCATCCTCAGCCACCACCTCCTTTGGAATTCTAGATGTCCACACATCTGAGATGTCCCT
AAGGTGTCTAGAACCTAACTGGCATTACTCCAAAGCTGGGCTTCTGTCCCTCAGGTGTTTGATG
TTCCCTTGCCCCCCTCTATGTTCCTTTGCTCAGATGGTTTCAACTCTGAGACTTCAAATATCCA
AATCCAGTCTCAAGTGCTGATGATCCCATAGCAACATCATGGATTCATTGTGTGAGGAGTATGT
CCTCCTATGTCCCATGCCCCCACCCTCTACTCCGGTATAGTCTTTGGGTGTCTGGAAAGTACCC
AAGTGACAGGTAGTTCTTAATATTCAGAGCACGGGGTGAAATCTACAGAGATATTTGGGACAAG
GGGCTCTAGAGAGAACGTTTGGAGCAGAACACGCATTGTGGATCATCCTGCTAATACCTGGGTC
TGGGAGGGATGAAAACATACATCTAGCTCTTCCTGAGGTAAAGAACGTGTGATATTTACAAGCA
ATAAAACTTTATTGAAGTCA

hide sequence

RefSeq Acc Id:

XM_039113347 ⟹ XP_038969275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	125,899,337 - 125,966,615 (-)	NCBI
mRatBN7.2	6	120,169,752 - 120,236,944 (-)	NCBI

RefSeq Acc Id:

XM_343096 ⟹ XP_343097

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	125,899,337 - 126,019,158 (-)	NCBI
mRatBN7.2	6	120,169,752 - 120,289,454 (-)	NCBI
Rnor_6.0	6	124,905,811 - 125,028,011 (-)	NCBI
Rnor_5.0	6	134,125,645 - 134,247,201 (-)	NCBI
RGSC_v3.4	6	125,178,886 - 125,298,359 (-)	RGD

Sequence:

show sequence

GGCCGGGACGGGCTCTCCACCACGGTGTGCTATGGTGGATGGAGGCTAGAGCCATAGCAGGGGC
TCACACGCGTGGGGCGGCCACAGCGCCAGCATCCTGAAGGAACTTCTGGAAGGGAGAAGCCGGG
AAGTCGGCAGAGCGGATGCAACAGCGCGCACCCCTGCAGCCTGAGGATAACACTGAGCCTCTTC
CTCCCCGGCCCAGGTCTGCGCGCGCAGGCTGCACCTGCCCGCGCACCCGGGCCGCCACGTGCTG
TGGCCCCGCCCCGCTCCAGTCCTCGCTCCCCCACGCGTTCCCCGCCCCGTGCGGCTCCGCTCCG
CTAGGCTGCGCAGGGCACCGGGCGACCGAGAAGGGACCGCGTCGCCTCTCCCTCCCCCTACTCG
CCCCCACCCTCTCGCTCTCCCCCGGCGGGCGGGGCCGCAGCCGCGCACCGTGGGCTCGCGCCCC
GCCTTTGTCTCCCGCGCTCGCTGCCGGCTGCCAGAGCCGCTTTGTGCGGCGCGGCCGCGGCTCA
GCATGGACGTGACGGTGTCGCAGCTCGTTGAGCTGTTTCTGCAGAGTCCGCTGGTGACCTGGGT
GAAAACTTTTGGCCCGTTTGGAAGTGGCCACCAGGACAACTTGACTCTGTACATGGATTTAGTG
GACGGCATCTTTTTGAACCAAATCATGTTGCAAATAGACCCCAGGCCAAGCAACCAGCGTATCA
ACAAGCACGTCAACAATGACGTCAACCTGCGCATTCAAAACCTGAGTATCCTGGTGAGGAACAT
CAAGACCTACTACCAGGAAGTTCTCCAGCAGCTGATCGTAATGAACTTGCCCAATGTTTTGATG
ATTGGCAAAGACCCACTGTCTGGGAAGAGCATGGAGGAGATTAAGAAGGTGCTGCTGCTGGTGC
TGGGCTGTGCTGTTCAGTGTGAGAGAAAAGAGGAATTCATTGAGAGAATCAAACAGCTGGACAT
CGAGACCCAGGCTGGCATTGTGGCTCATATCCAGGAGGTGACCCACAACCAGGAGAATGTGTTT
GACCTGCAGTGGCTGGACTTACCTGATGTGGCCCCAGAGGAGCTGGAGGCCCTCTCGAGAAACA
TGGTGTTCCACCTCCGCAGACTCATCGATGAGCGTGACGAGTGTACTGAGCTGATCGTGGACCT
GACACAAGAGAGAGACTACCTCCAGGCACAGCACCCTCCCAGCCCTGGCAAGTTCTCTAGTCCG
GACTCCACACCAAGCCCCACCAGCAGCCTGTCCAGTGAGGACAAGCAGCACCTGGCTGTGGAGC
TGGCTGACACCAAGGCCAGGCTGCGGCGCGTCCGGCAGGAGCTGGAGGAGAAGACAGAGCAGCT
TGCAGACACCAGACACGAGGTGGATCAGCTGGTCCTGGAGCTTCAGAAGGCCAAGCAAGACAAT
ATTCAGCTTGCAGCTGATGCCCGGTCAGCCCGGGCCTATCGGGATGAGCTGGACTCGCTGAGGG
AAAAGGCGAACCGTGTGGAGAGGCTGGAGATGGAGCTGGTACGCTGCAAGGAGAAGCTGCACGA
TGTCGACTTCTACAAGGCTCGCATGGAGGAACTGAGAGAAGATAACATCATCTTAATCGAGACG
AAGGCCATGTTGGAGGAACAACTGACTGCCTCCCGGGCTCGCAGCGATAAAGTCCACGAGCTGG
AGAAAGAGAACCTACAGCTGAAATCTAAACTCCATGACTTGGAACTGGATCGGGACACTGACAA
GAAACGGATTGAGGAGCTGCTGGAAGAAAACATGGTTCTGGAGATCGCACAGAAGCAGAGCATG
AACGAGTCGGCCCACCTGGGCTGGGAGCTGGAACAGCTGTCCAAGAACGCGGACTTGTCCGACG
CCTCCAGGAAATCCTTCGTGTTTGAGCTGAATGAGTGCGCCTCCAGCCGCATCCTGAAGCTGGA
GAAGGAGAACCAGAGCCTCCAGAGCACCATCCAGGGTCTGCGGGATGCGTCGCTGGCGCTCGAG
GAGAGCAGCCTCAAGTGTGGGGAGCTGGAGAAGGAGAACCAGCAGCTTAGCAAGAAGATTGAAA
AGTTACAAACGCAGCTGGAGAGAGAAAAGCAGAGTAACCAAGACCTGGAGACACTGAGTGAGGA
GCTGATTCGAGAGAAGGAACAGCTGCAGAGTGGCATGGAGGCCCTGAAGGCGGACAGGGCCAGG
CAGATAAAAGATCTGGAGCAGGAGAAGGGCCACCTCCACCAAGCTGTGTGGTCACTGCGGGAGA
GACCGCAAGTCAACAGCATGAAGGATGTGGAGAAGGAAAACAGAACCCTTCACCAGGCTGTGAC
CGAGGCAGGCAGCAAGCTCAGCCAGCTGGAGTCGGAGAAGAAGCAGCTGCACCGAGACTTGGAG
GAGGCCAAGGAGAAGGGAGAGCGCGCAGAGGTGCTGGAGAAGGAGCTGCACCGGCTGGAGAAAG
AGAACGAGCAGCTGACCAAGAAGGTGACCTCCCTGAAGACGGTCACTGAAAAGGTCGAGGCCCT
GGAGCATGAGAGCCAGGGTCTGGAGCTGGAAAACCGGACGCTGAGAAAGTCCTTGGACACCCTG
CAGAACGTGTCTGTGCAGCTCGAGGGCCTGGAGAGGGACAACAAGCAGCTGGATCAGGAGAACC
GGGAGCTGCGCAAGATGGTGGAGGCCATGCGCTTCACCAGCGCCAAGATGGCGCAGATGGAGAC
GGAGAACCAGCAGCTGGAGAGGGAGAAGGAGGAGCTGCGCAGGAATGTGGAGATGCTGAAGACC
TTAAGCAAGAAGTCGGAGCGCCTGGAGCACAGCTACCAGAGCGTGAGTGCTGAGAACCTGCAGC
TGCAGCACAGCCTGGAGAGCAGCAACCACAAGTCTCAGGCCCTGCAGAGGGAGCTGAGCGAGCT
GGAGGCTGAGCGCCAGGCCCTGAAGCGAGACCTAGAAACTCTGCAGCTCGCCAACAAACAGCTC
GAGGGGGCTGAGAAAGACAGGAAGGCCCTGGAGCAGGAGGTGGCCCAGCTGGAGAAGGACAAGA
AACTGCTGGAGAAAGAGACCAGACGCCTATGGCAGCAGGTGGAGCTCAAGGACGCTGTCCTGGA
TGACAGTGCGGCCAAGCTGTCGGCGGCCGAGAAGGAAAGCCGCGCGCTGGACAAGGAGCTGGCC
CGCTGCCGGGATGCGGCCAGCAAGCTGAAGGAGCTGGAGAAGGACAACAGGGACCTCACCAAGC
AGGTCACCGTGCACACGAGGACGCTCACCACCCTGAGAGAGGACCTGGTGCTGGAGAAACTGAA
GAGCCAGCAGCTGACCAGCGAGCTGGACAAACTGAGCCAGGAGCTGGAGAAGGTCGGCCTCAGC
AAGGAGCTGCTGCTGCAGGAGGATAACAGTCATGGTGACACAAAAGGCAAGATTTGGGAAAGCA
AAAACGAATCCTCATTGAAAACAACACTAGCTATGAAAGAAGAAAAGATTGTGTTTTTGGAGGC
ACAAGTGGAAGAGAAAGAGAGCTTGAATCACCAACTCCAGATCGAGCTGCAGATGGTAAAGAAA
GAATGTGAGCAGCTCAGGAAGACCCAGGAGGATGGAACCCAGGCGCAGAACGTGCAGAAGCACG
CTCCAGACAAGGTCACCAGTCACCAAGAGAAGGAGGCCTGGGGACCCAGCCACAAAGAGGCCAC
CATGGAGCTACTCCGTGTGAAGGACCGGGCCATCGAGCTGGAGCGCAGTAACGCAGCTCTTCAG
GCGGAGAGGCAGTTGCTGAAGGAGCAGCTGCAGCACCTGGAGACTCAGAACGTGTCCTTCAGCA
GCCAGATCCTGACGCTACAGAAGCAGAGCGCCTTCCTACAAGAGCACACCACCACGCTGCAGAC
GCAGACTGCAAAGCTGCAGGTGGAGAATTCCACACTGAGCTCCCAGAATGCAGCGCTCAGTGCA
CAGTACACCATGCTACAGAGCCAGCACGCCGCCAAGGAGGCGGAACACGAGAGTCTGCAGCAGC
AGCAGGAGGAGCTGGCGGCTGTCTATGAAGCCTTGCTTCGGGACCACGACCGCCTGGGTGCCCT
GTACGAGCGCCAGTCCTCAGAGTACGAGGCCCTCATCTGCCAGCACAGCTGTCTGAAGACGTTG
CACAGGAACCTGGAGCTGGAACACAAGGAGCTTGGAGAGAGGCACGGAGACTTACAGAAGCGTA
AGGCAGAACTGGAGGAGCTGGAAAAAGCCCTGAGCACTGAGCGGGAGGTTCTGCAGCAGGAACA
GAGGACCAGTGCCATCGCCACGAGCGAGAACCAGAGGCTGCGAGGAGAGCTGGACAGGATCAGT
TTCCTGCACCACCAGCTGAAGGGGGAATATGAGGAGCTGCACGCCCACACCAAGGAGTTGAAAA
CCTCGCTGAACAACTCTCGGCTGGAGCTGAACCGCTGGCAGGCACGCTTTGACGAGCTGAAAGA
GCAGCACCAGAACATGGACATCTCTCTGACCAAGCTGGACAACCACTGTGAGCTGCTCTCCCGT
CTCAAGGGGAACTTAGAGGAGGAGAATCAGCACCTGCTGAGCCAGATCCAGCTGCTGAGCCAGC
AGAACCAGATGCTTCTAGAACAGAACATAGAGAGCAAGGAGCAGTACCACGAGGAACAGAAGCA
GTACATAGACAAGTTAAACGCCTTACGGAGACACAAGGAAAAACTGGAAGAAAAAATCATGGAT
CAGTACAAGTTCTATGACCCTGCTCCAAAGAAGAAGAACCACTGGATCGGAGCCAAAGCCCTAG
TCAAACTTATCAAGCCAAAGAAAGAAGGCTCCAGAGAACGGTTAAAATCCTCGGATAGCCCCCC
CTGGCAGCTAGAGTCCTCAGACCCCGCCTCACCACCTGCCTCCCAGACCCTCAGACCACAGACG
GAGAACTCTGACAACCCCCCATCGGGCTCAAACTGCACAGAAGAGAGAGACACCCACAACGGGC
CTGTGGGGAAAGGCCCCGGGGATCTAAAACCAAAACGAGGGTCCCCACGTGGAGGCACTGTTGA
CCGCACGGACACCTCCACTGACCCAGCTGTGAAGTCCTGGCCCTCAGAGCCTGGCTCCCGGAGT
TTTTCGACCTCAGCCACCACGGCAGCCCTTTCTAGCTCCACTCCTATCCTTAAACACCTAGGCC
GCACCAAAGGTTGTAACTCAGATGACAACCTCTGCGAGCCATCCCCCGAGCCCGAGGGCCCCTA
CCACAGGCAGCAGGTGTCTCGGCCAAACAGCTTGGAGAGCAGCAGGAGCACATCCAGCAACAGC
TCGCCTTTGAGCCTCAAGGGTTCCTCCGACCATCTGCACAGCCGGTGTGAGAGCTTCAGCAGTG
CAGACCTGATCCCCAGCAGGGACCCTACCACACTGTCCCGGGATGGCAGCACCCCAGGACGTGG
TCTTCTCGGCCGCCATGAGTACCCTCCACCCCGGAATGGGCCTGTCCCCCAGGAGAATATCCAG
AAGAAGGGTGCAGCTTCAGCCCACACTGGGGTGCGACCCCACTCAGCCTCTCCCAGCAGTGAGA
TGGTCACCTTGGAGGAATTTTTAGAGGAGAGTAACCGTGGCTCTCCTACCCATGATACGCCCAG
CTGCCGTGATGACCTGCTTAGTGACTACTTCCGAAAGGCCCATGATCCCCCAGCCATGGGAGGC
CAGCCAGGACCACCAACTAGGAAAGAAGGAGCCAAGATGCCCACCAGCTTCGTGGCTCCCACCG
TCAAGATGCCAGTCAGCACCTCTGAGGGGCAGCAGCTGAAGCCAGGGCATTATGTAAAGCCCAA
CCTGAGACCATCTGAAGCCGAGGCTCTGGCTGGGATCCCTTCAAGACAGGTCCAGCCTCCCCAG
AGCCTGTCTCTGGGTAGACCCAGGCAAGCCACAATGTCCCAAACTTGTCACGTGCCTGTCAGCC
GAAGTGCGTCTCTGAGCAGAGCTTTCAGCCTGGCTTCAGCTGACCTCCTCAGGGCCAGTGGGCC
AGAAGCCTGCAGGCCAGAGTCTCCTCAGAAGCCAGGGTGTCCTGAGGCTGTAGGAACCAGAGAG
ACAAGCGGCCACAGCCTGCAAGGCTCCCATATCCTACCCCGGGAGAGGACTCCAATCGTAGGAA
AAGCTGACAGTTCCTCTCCAGGCCCAGGCACCCGAGGACGGCCACTGGACACAAGGCGCTTCTC
CCTGGCTCCCCCGAAGGAAGAGAGGCTGGCCCCCCTACAGCAGTCTGCCACAGCCCCAGCCCTT
GCTACTGGATGTGGCAGTGGTAGCAACCCCCAGATCCAGCACTTTTCTCCCACTGTGGCTCCTG
CGGTCAGGACAAAACCCAAAGGGCCACAGCACTCAGGGGAGGTGGCCACTGTAGCTCCTGTGCG
TCCAGGGCTTGGCACCTCAGAGGGAGATGGGGGCCCAGGGCATGGTTACAGCGAGGGGCTCCTC
ACCAAAAGCCCTGGTAGGTCTTCTGACTTGGCTCCCCATGTCAAAAGGGGCCCTGATGACTTCA
GTCAAGGGAGCAGCTCAAAGAGCACACCAGCATCCCCAGAGCCGGGTGGGGACCCACAGACAGT
GTGGTATGAATACGGTTGTGTGTGACTCACGTGGCGGATCTGCAGCTTGCAAACGCTAGGCTGC
TGGTTATGCCTTCTGATTACAACGGCCTTTTCCCCTGCTGGCCTGTGGTGTTGGGGGAGGGGGT
ATAGAATGAGGAGTGGGGTTCCCGCACACTCATCCGATTGGCTGATGGAAACACCGTGCCAAGC
CCTAAGAGGATTGCCCTCCAGGGTCTGTAACTTCTATAGCTGCAGCTCCCAGCAGCTGGTATCT
TACGGACAAATCAGTTTAGCATGGGGACCGCTTAGGAGTCAGTGGCACAACGAATTTACCCAGA
AACAGACACTACTTGAGTAGGAATACTCCTCTGCAACCTGTCGACCTCCACTAAAGAGCGAGTG
CACGTGTGAATACACACACATGTACTAGGCTCACAAAGCTAAGCCCTGGTGGGTCTGGAAACCA
CTCCTGCCTAAAAGCCATTGGTCCTAGGAAAATCTTACTCTGGGAAAGGATTTGCAGAGTAGGG
GGAAAGCCTGCAGCAGGGCTGGCTGTTAAACCCAGGACCGCCTGCCATCCCATTCCTGAGGTCC
AAGCACTTCCCTTTACAGCAGACCAAGCTTTAGGATCAGCCACAGGGTGCTTGGTAGCTGGCTC
ATGGGCCCTGCCTAGTAGACGTTAAGGCTGCCTAGGAACCAGCCTTTTGGGACTTCCTAGACTA
CTTTACTACAAACACTGGATCTGCCAGGCCTTGACTGTGAGGCAGTGAGCCCTGAGTGTCCCAG
GCTGGCAGGAGTAGTTACTACACAGAAGGAAGGCCAAAGCCACATTCACCTGGTAATGTGGCGG
CTGCACCCAGCCTTCCTTGGCTCAGACGGAACTTTTTTTTTTTCTGAATAACTTTTTGGGGGTA
GAAACCAAATTTCTTTAATATATATATACACATATGGATAACTATGTATACACACTTTGGGGGC
CTATTTATGTTCCATTGTAAGTCATTCTTTGTCTGTCTGGTCTGCTTCCTGATGTGTTTTGTTT
CCTATTGTAATGGTGCTTTTCCTGGGATGGACTAAACGGTTTATTTTCTGTTCTGATTAATGTG
CTGAGAAAGAAACGGGAGACCTTGAATGTTGACAGGATCCATGGTGAGGGTGTTTGGGTTATGT
GTTAAATAGCCATTCGTTCTGGAAGACCAGGACGGGGCCATAATAAAGTGGAAAGGACTGTGAC
TGGGCCCTGGTTTTGTTCAGAGAACGCTGCCTGCATGCAGAGGGCTACGGGCTTTAGGCTCCCA
CACCTCAGGCTCCTCCGGCTGTGGAAGTCCGTTGTTGGCTAGGTCATTAGGTGTATGAAGCTGC
ACAGCCTTTAAGAGGAATGTAAAGGACAGAGCTGTCCTTGAAGTGATGGCAGCCCATGGTCCAC
ATCACATTGATTCTGCATCAGGTGAGTTCCCGTTGGGCAGGGGGCTCTGTTCCTGTCAGGACAG
GGTCCCAAAGCTGACAACACTACCAAGGGCTACGCCTTGGAATTGGACCTTAGGACATCATGCT
TAAATCAGTGAAGTAGATGAAATGGGAAAAGGTATATAAGTCTCCCCAGGTGACCAAACCTTGT
CCAGTTCTCAGGTCCGCCTGATAATCTCAGTTCCCTCTTCCCTCACCAGACTTCCTGTGTACAG
CACTCTTGCCTCCTGGCCCTGCCCTTCCTTCCTGAGTCTCTGCAATCTGTTGGATCTGGCTGCT
TGGTGGGAACTGCTATCCGTGGAGTAGTCACTTGGCAGGCTTCACTCCGTGTGGCCTTTGTAGG
ATTTAACACCTGGCCAGGCATGCCTCGTTGTTGGCAGCTTCTGTCTCACGACTCTGTCCCTTCT
GGGACAGCCCTCCCACATTCATGCTTGCAGGGCTCAACCATCCCCAGAGAGCCTGTGGGCCGCC
CTGAGCTCCCTCAGCCACTTTGCTTCCCTCCACACACGCAATACAATAGACCTCTTAGGAACTT
CAGACACGAAGCCCACCCTCCTGGAACACAACCTCTCATCTCAGTTCCCCAAACTCTTCCTCCA
GCTCGCACCGTCTGTTGTGTTGTTATAGAAGCCTGAATTTGGTCTTGACTCCTCAACTGTGTGT
AGAGATCATACTAGATCCTTGCCCTTGGCTAGCTCATGCCAGGCCTCATCCTCCAGTCCTGGGG
CCCTAGTTCCGATCTGTCTCTGCCTCCGTTTCCTCGGCGCACTTTAGTTCTGTCTGATGTAAAG
GCTGCTATTAAGTCGACAGTGGCACTAAATCCAAAGGCAGTCTGGTCACTCTGGTACATTCTCC
CTGGGTGACCTTTGCTTTGAAACACTCCGCTCTCTGTGTCTCGGCAGTAGCCACACCCTGCGCT
CTGCAGACTGAGTCCTGCACACCTGAGGCACACCTAGGTTTCTCATCACCCCTCACGCCCTGAC
AAGCTCCTACACATCCACAATTGTAATTACAGGCCATTTCTAGGAGGCGAGGAGCCGGCATCCT
CAGCCACCACCTCCTTTGGAATTCTAGATGTCCACACATCTGAGATGTCCCTAAGGTGTCTAGA
ACCTAACTGGCATTACTCCAAAGCTGGGCTTCTGTCCCTCAGGTGTTTGATGTTCCCTTGCCCC
CCTCTATGTTCCTTTGCTCAGATGGTTTCAACTCTGAGACTTCAAATATCCAAATCCAGTCTCA
AGTGCTGATGATCCCATAGCAACATCATGGATTCATTGTGTGAGGAGTATGTCCTCCTATGTCC
CATGCCCCCACCCTCTACTCCGGTATAGTCTTTGGGTGTCTGGAAAGTACCCAAGTGACAGGTA
GTTCTTAATATTCAGAGCACGGGGTGAAATCTACAGAGATATTTGGGACAAGGGGCTCTAGAGA
GAACGTTTGGAGCAGAACACGCATTGTGGATCATCCTGCTAATACCTGGGTCTGGGAGGGATGA
AAACATACATCTAGCTCTTCCTGAGGTAAAGAACGTGTGATATTTACAAGCAATAAAACTTTAT
TGAAGTCA

hide sequence

RefSeq Acc Id:

XR_005506202

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	125,910,521 - 126,019,162 (-)	NCBI
mRatBN7.2	6	120,180,939 - 120,289,459 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419013	(Get FASTA)	NCBI Sequence Viewer
	XP_017449985	(Get FASTA)	NCBI Sequence Viewer
	XP_038969275	(Get FASTA)	NCBI Sequence Viewer
	XP_343097	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81727	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005908
	ENSRNOP00000005908.6
	ENSRNOP00000081834
	ENSRNOP00000081834.1
	ENSRNOP00000099860.1

RefSeq Acc Id:

XP_343097 ⟸ XM_343096

- Peptide Label:

isoform X1

- Sequence:

show sequence

MDVTVSQLVELFLQSPLVTWVKTFGPFGSGHQDNLTLYMDLVDGIFLNQIMLQIDPRPSNQRIN
KHVNNDVNLRIQNLSILVRNIKTYYQEVLQQLIVMNLPNVLMIGKDPLSGKSMEEIKKVLLLVL
GCAVQCERKEEFIERIKQLDIETQAGIVAHIQEVTHNQENVFDLQWLDLPDVAPEELEALSRNM
VFHLRRLIDERDECTELIVDLTQERDYLQAQHPPSPGKFSSPDSTPSPTSSLSSEDKQHLAVEL
ADTKARLRRVRQELEEKTEQLADTRHEVDQLVLELQKAKQDNIQLAADARSARAYRDELDSLRE
KANRVERLEMELVRCKEKLHDVDFYKARMEELREDNIILIETKAMLEEQLTASRARSDKVHELE
KENLQLKSKLHDLELDRDTDKKRIEELLEENMVLEIAQKQSMNESAHLGWELEQLSKNADLSDA
SRKSFVFELNECASSRILKLEKENQSLQSTIQGLRDASLALEESSLKCGELEKENQQLSKKIEK
LQTQLEREKQSNQDLETLSEELIREKEQLQSGMEALKADRARQIKDLEQEKGHLHQAVWSLRER
PQVNSMKDVEKENRTLHQAVTEAGSKLSQLESEKKQLHRDLEEAKEKGERAEVLEKELHRLEKE
NEQLTKKVTSLKTVTEKVEALEHESQGLELENRTLRKSLDTLQNVSVQLEGLERDNKQLDQENR
ELRKMVEAMRFTSAKMAQMETENQQLEREKEELRRNVEMLKTLSKKSERLEHSYQSVSAENLQL
QHSLESSNHKSQALQRELSELEAERQALKRDLETLQLANKQLEGAEKDRKALEQEVAQLEKDKK
LLEKETRRLWQQVELKDAVLDDSAAKLSAAEKESRALDKELARCRDAASKLKELEKDNRDLTKQ
VTVHTRTLTTLREDLVLEKLKSQQLTSELDKLSQELEKVGLSKELLLQEDNSHGDTKGKIWESK
NESSLKTTLAMKEEKIVFLEAQVEEKESLNHQLQIELQMVKKECEQLRKTQEDGTQAQNVQKHA
PDKVTSHQEKEAWGPSHKEATMELLRVKDRAIELERSNAALQAERQLLKEQLQHLETQNVSFSS
QILTLQKQSAFLQEHTTTLQTQTAKLQVENSTLSSQNAALSAQYTMLQSQHAAKEAEHESLQQQ
QEELAAVYEALLRDHDRLGALYERQSSEYEALICQHSCLKTLHRNLELEHKELGERHGDLQKRK
AELEELEKALSTEREVLQQEQRTSAIATSENQRLRGELDRISFLHHQLKGEYEELHAHTKELKT
SLNNSRLELNRWQARFDELKEQHQNMDISLTKLDNHCELLSRLKGNLEEENQHLLSQIQLLSQQ
NQMLLEQNIESKEQYHEEQKQYIDKLNALRRHKEKLEEKIMDQYKFYDPAPKKKNHWIGAKALV
KLIKPKKEGSRERLKSSDSPPWQLESSDPASPPASQTLRPQTENSDNPPSGSNCTEERDTHNGP
VGKGPGDLKPKRGSPRGGTVDRTDTSTDPAVKSWPSEPGSRSFSTSATTAALSSSTPILKHLGR
TKGCNSDDNLCEPSPEPEGPYHRQQVSRPNSLESSRSTSSNSSPLSLKGSSDHLHSRCESFSSA
DLIPSRDPTTLSRDGSTPGRGLLGRHEYPPPRNGPVPQENIQKKGAASAHTGVRPHSASPSSEM
VTLEEFLEESNRGSPTHDTPSCRDDLLSDYFRKAHDPPAMGGQPGPPTRKEGAKMPTSFVAPTV
KMPVSTSEGQQLKPGHYVKPNLRPSEAEALAGIPSRQVQPPQSLSLGRPRQATMSQTCHVPVSR
SASLSRAFSLASADLLRASGPEACRPESPQKPGCPEAVGTRETSGHSLQGSHILPRERTPIVGK
ADSSSPGPGTRGRPLDTRRFSLAPPKEERLAPLQQSATAPALATGCGSGSNPQIQHFSPTVAPA
VRTKPKGPQHSGEVATVAPVRPGLGTSEGDGGPGHGYSEGLLTKSPGRSSDLAPHVKRGPDDFS
QGSSSKSTPASPEPGGDPQTVWYEYGCV

hide sequence

RefSeq Acc Id:	XP_017449985 ⟸ XM_017594496
- Peptide Label:	isoform X3
- UniProtKB:	A6JEI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MECSGRTGFHTLWRDTASEACVLGGSEERPELREDNIILIETKAMLEEQLTASRARSDKVHELE KENLQLKSKLHDLELDRDTDKKRIEELLEENMVLEIAQKQSMNESAHLGWELEQLSKNADLSDA SRKSFVFELNECASSRILKLEKENQSLQSTIQGLRDASLALEESSLKCGELEKENQQLSKKIEK LQTQLEREKQSNQDLETLSEELIREKEQLQSGMEALKADRARQIKDLEQEKGHLHQAVWSLRER PQVNSMKDVEKENRTLHQAVTEAGSKLSQLESEKKQLHRDLEEAKEKGERAEVLEKELHRLEKE NEQLTKKVTSLKTVTEKVEALEHESQGLELENRTLRKSLDTLQNVSVQLEGLERDNKQLDQENR ELRKMVEAMRFTSAKMAQMETENQQLEREKEELRRNVEMLKTLSKKSERLEHSYQSVSAENLQL QHSLESSNHKSQALQRELSELEAERQALKRDLETLQLANKQLEGAEKDRKALEQEVAQLEKDKK LLEKETRRLWQQVELKDAVLDDSAAKLSAAEKESRALDKELARCRDAASKLKELEKDNRDLTKQ VTVHTRTLTTLREDLVLEKLKSQQLTSELDKLSQELEKVGLSKELLLQEDNSHGDTKGKIWESK NESSLKTTLAMKEEKIVFLEAQVEEKESLNHQLQIELQMVKKECEQLRKTQEDGTQAQNVQKHA PDKVTSHQEKEAWGPSHKEATMELLRVKDRAIELERSNAALQAERQLLKEQLQHLETQNVSFSS QILTLQKQSAFLQEHTTTLQTQTAKLQVENSTLSSQNAALSAQYTMLQSQHAAKEAEHESLQQQ QEELAAVYEALLRDHDRLGALYERQSSEYEALICQHSCLKTLHRNLELEHKELGERHGDLQKRK AELEELEKALSTEREVLQQEQRTSAIATSENQRLRGELDRISFLHHQLKGEYEELHAHTKELKT SLNNSRLELNRWQARFDELKEQHQNMDISLTKLDNHCELLSRLKGNLEEENQHLLSQIQLLSQQ NQMLLEQNIESKEQYHEEQKQYIDKLNALRRHKEKLEEKIMDQYKFYDPAPKKKNHWIGAKALV KLIKPKKEGSRERLKSSDSPPWQLESSDPASPPASQTLRPQTENSDNPPSGSNCTEERDTHNGP VGKGPGDLKPKRGSPRGGTVDRTDTSTDPAVKSWPSEPGSRSFSTSATTAALSSSTPILKHLGR TKGCNSDDNLCEPSPEPEGPYHRQQVSRPNSLESSRSTSSNSSPLSLKGSSDHLHSRCESFSSA DLIPSRDPTTLSRDGSTPGRGLLGRHEYPPPRNGPVPQENIQKKGAASAHTGVRPHSASPSSEM VTLEEFLEESNRGSPTHDTPSCRDDLLSDYFRKAHDPPAMGGQPGPPTRKEGAKMPTSFVAPTV KMPVSTSEGQQLKPGHYVKPNLRPSEAEALAGIPSRQVQPPQSLSLGRPRQATMSQTCHVPVSR SASLSRAFSLASADLLRASGPEACRPESPQKPGCPEAVGTRETSGHSLQGSHILPRERTPIVGK ADSSSPGPGTRGRPLDTRRFSLAPPKEERLAPLQQSATAPALATGCGSGSNPQIQHFSPTVAPA VRTKPKGPQHSGEVATVAPVRPGLGTSEGDGGPGHGYSEGLLTKSPGRSSDLAPHVKRGPDDFS QGSSSKSTPASPEPGGDPQTVWYEYGCV hide sequence

Ensembl Acc Id:

ENSRNOP00000005908 ⟸ ENSRNOT00000005908

RefSeq Acc Id:	XP_038969275 ⟸ XM_039113347
- Peptide Label:	isoform X2
- UniProtKB:	D4A9W1 (UniProtKB/TrEMBL), A6JEI3 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081834 ⟸ ENSRNOT00000099776

Ensembl Acc Id:

ENSRNOP00000099860 ⟸ ENSRNOT00000173133

Protein Domains

Calponin-homology (CH) HOOK N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9W1-F1-model_v2	AlphaFold	D4A9W1	1-2012	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694782

Promoter ID:

EPDNEW_R5302

Type:

initiation region

Name:

Ccdc88c_1

Description:

coiled-coil domain containing 88C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	125,027,520 - 125,027,580	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307429	AgrOrtholog
BioCyc Gene	G2FUF-36479	BioCyc
Ensembl Genes	ENSRNOG00000004482	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005908	ENTREZGENE
	ENSRNOT00000005908.10	UniProtKB/TrEMBL
	ENSRNOT00000099776	ENTREZGENE
	ENSRNOT00000099776.2	UniProtKB/TrEMBL
	ENSRNOT00000173133.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.418.10	UniProtKB/TrEMBL
InterPro	CH-domain	UniProtKB/TrEMBL
	CH_dom_sf	UniProtKB/TrEMBL
	HOOK_N	UniProtKB/TrEMBL
NCBI Gene	362770	ENTREZGENE
PANTHER	HOOK PROTEINS	UniProtKB/TrEMBL
	PTHR18947:SF31	UniProtKB/TrEMBL
Pfam	HOOK_N	UniProtKB/TrEMBL
PhenoGen	Ccdc88c	PhenoGen
PROSITE	PS50021	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004482	RatGTEx
Superfamily-SCOP	Hook domain	UniProtKB/TrEMBL
UniProt	A0A8I5ZTX2	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0KY71_RAT	UniProtKB/TrEMBL
	A6JEI3	ENTREZGENE, UniProtKB/TrEMBL
	D4A9W1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Ccdc88c	coiled-coil and HOOK domain protein 88C	Ccdc88c	coiled-coil domain containing 88C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ccdc88c	coiled-coil domain containing 88C	RGD1307429_predicted	similar to KIAA1509 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1307429_predicted	similar to KIAA1509 protein (predicted)	LOC362770_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC362770_predicted	similar to KIAA1509 protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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