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Gene: Sgsm2 (small G protein signaling modulator 2) Rattus norvegicus

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Symbol:

Sgsm2

Name:

small G protein signaling modulator 2

RGD ID:

1306957

Description:

Predicted to enable GTPase activator activity and small GTPase binding activity. Predicted to be involved in late endosome to Golgi transport. Predicted to be located in melanosome. Orthologous to human SGSM2 (small G protein signaling modulator 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC303304; RUN and TBC1 domain containing 1; Rutbc1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SGSM2 (small G protein signaling modulator 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Sgsm2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sgsm2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SGSM2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SGSM2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sgsm2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SGSM2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SGSM2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sgsm2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sgsm2 (small G protein signaling modulator 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SGSM2 (small G protein signaling modulator 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sgsm2 (small G protein signaling modulator 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sgsm2 (small G protein signaling modulator 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1695	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1695	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tbc-8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32506	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32506	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sgsm2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sgsm2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	60,216,556 - 60,258,199 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	60,216,556 - 60,257,817 (-)	Ensembl				GRCr8
mRatBN7.2	10	59,718,180 - 59,759,822 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	59,718,183 - 59,759,447 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	64,364,602 - 64,405,954 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	63,870,189 - 63,911,542 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	59,332,564 - 59,373,926 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	61,703,837 - 61,745,110 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	61,703,839 - 61,745,097 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	61,425,573 - 61,467,056 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	62,165,180 - 62,206,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	58,748,712 - 58,790,016 (-)	NCBI		Celera
RGSC_v3.1	10	62,180,270 - 62,220,052 (-)	NCBI
Cytogenetic Map	10	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

prostate cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

C60 fullerene (EXP)

carbon nanotube (ISO)

cisplatin (ISO)

clobetasol (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

genistein (ISO)

gentamycin (EXP)

indometacin (ISO)

maneb (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

methylmercury chloride (ISO)

Monobutylphthalate (EXP)

okadaic acid (ISO)

paracetamol (EXP)

paraquat (ISO)

PCB138 (ISO)

pirinixic acid (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

toluene (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

late endosome to Golgi transport (IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

cytoplasmic vesicle (IEA)

melanosome (IEA,ISO)

Molecular Function

GTPase activator activity (IBA,IEA,ISO)

small GTPase binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21808068	PMID:26620560

Genomics

Comparative Map Data

Sgsm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	60,216,556 - 60,258,199 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	60,216,556 - 60,257,817 (-)	Ensembl				GRCr8
mRatBN7.2	10	59,718,180 - 59,759,822 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	59,718,183 - 59,759,447 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	64,364,602 - 64,405,954 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	63,870,189 - 63,911,542 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	59,332,564 - 59,373,926 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	61,703,837 - 61,745,110 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	61,703,839 - 61,745,097 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	61,425,573 - 61,467,056 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	62,165,180 - 62,206,440 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	58,748,712 - 58,790,016 (-)	NCBI		Celera
RGSC_v3.1	10	62,180,270 - 62,220,052 (-)	NCBI
Cytogenetic Map	10	q24	NCBI

SGSM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	2,337,501 - 2,381,054 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	2,337,492 - 2,381,058 (+)	Ensembl			hg38	GRCh38
GRCh37	17	2,240,795 - 2,284,348 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	2,187,556 - 2,231,098 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	2,256,908 - 2,300,461 (+)	NCBI		Celera
Cytogenetic Map	17	p13.3	NCBI
HuRef	17	2,135,506 - 2,177,896 (+)	NCBI		HuRef
CHM1_1	17	2,249,759 - 2,291,729 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	2,224,838 - 2,269,747 (+)	NCBI		T2T-CHM13v2.0

Sgsm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	74,740,088 - 74,787,929 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	74,740,087 - 74,787,886 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	74,849,262 - 74,897,211 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	74,849,261 - 74,897,060 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	74,662,766 - 74,710,582 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	74,665,459 - 74,713,266 (-)	NCBI		MGSCv36	mm8
Celera	11	82,362,302 - 82,403,240 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	45.76	NCBI

Sgsm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	871,654 - 907,326 (-)	Ensembl
ChiLan1.0	NW_004955481	871,719 - 907,326 (-)	NCBI	ChiLan1.0	ChiLan1.0

SGSM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	9,918,056 - 9,961,833 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	11,885,374 - 11,929,243 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	2,328,517 - 2,372,408 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	2,213,183 - 2,256,638 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	2,213,192 - 2,256,638 (+)	Ensembl			panPan2	panpan1.1

SGSM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	46,405,890 - 46,464,586 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	46,415,801 - 46,477,524 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	45,581,063 - 45,616,639 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	47,262,291 - 47,297,874 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	47,237,076 - 47,297,874 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	46,029,217 - 46,064,789 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	46,323,745 - 46,359,284 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	46,379,012 - 46,414,591 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sgsm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	45,517,957 - 45,558,671 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	8,395,915 - 8,436,655 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936538	8,395,902 - 8,436,616 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SGSM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	48,416,790 - 48,462,846 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	48,416,774 - 48,462,851 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SGSM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	1,970,412 - 2,012,417 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	1,970,456 - 2,014,384 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	19,949,600 - 19,992,896 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sgsm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	4,999,951 - 5,036,771 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624786	4,999,883 - 5,045,208 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sgsm2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	93,591,343 - 93,634,170 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sgsm2
124 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	250
Count of miRNA genes:	160
Interacting mature miRNAs:	201
Transcripts:	ENSRNOT00000034298
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35893451	64140567	Rat
1549846	Scl47	Serum cholesterol level QTL 47	3.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	10	51071897	96071897	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	36211556	69161158	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31796281	76796281	Rat
152025227	Bw195	Body weight QTL 195	5.73		body mass (VT:0001259)		10	47489017	69161158	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15776754	60776754	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	27023535	98502431	Rat
2293669	Bmd33	Bone mineral density QTL 33	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck polar moment of inertia (CMO:0001670)	10	27443787	72443787	Rat
152025224	Bw193	Body weight QTL 193	6.47		body mass (VT:0001259)		10	52162433	75582749	Rat
631552	Vetf2	Vascular elastic tissue fragility QTL 2	4.5	0.0002	aorta elastic tissue integrity trait (VT:0010556)	artery internal elastic lamina non-tumorous lesion count (CMO:0001913)	10	35509383	91417879	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1250554	64349221	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	56868440	76129113	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
2293679	Bmd30	Bone mineral density QTL 30	3.5	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	19939207	64939207	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	18035782	63035782	Rat
70164	Bw21	Body weight QTL 21	4.36	0.00005	body mass (VT:0001259)	body weight (CMO:0000012)	10	54296336	99451733	Rat
61463	Bp12	Blood pressure QTL 12	6.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	41831278	86831278	Rat
1579919	Bp281	Blood pressure QTL 281		0.01	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50464802	95464802	Rat
2300218	Hpcl2	Hepatic cholesterol level QTL 2			liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	45529164	96099749	Rat
8694173	Bw149	Body weight QTL 149	4.38	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	10	44939359	89939359	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18668419	63668419	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21833758	61843633	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50860288	95860288	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28950353	73950353	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35893263	64653589	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29800910	64653589	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	27443787	72443787	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14991535	86964295	Rat
70188	BpQTLcluster1	Blood pressure QTL cluster 1	4.864		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	42823274	87823274	Rat
9589030	Epfw9	Epididymal fat weight QTL 9	19.24	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	10	44939359	89939359	Rat
2293652	Bmd22	Bone mineral density QTL 22	4.9	0.0001	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	10	27443787	72443787	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
70198	BpQTLcluster9	Blood pressure QTL cluster 9	2.94		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	42823274	87823274	Rat
2306787	Ean3	Experimental allergic neuritis QTL 3	3.1		nervous system integrity trait (VT:0010566)	body weight loss (CMO:0001399)	10	54296227	67476781	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22931373	91127454	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6660923	73950353	Rat
2306792	Ean4	Experimental allergic neuritis QTL 4	4		nervous system integrity trait (VT:0010566)	IFNG-secreting splenocyte count (CMO:0002122)	10	49495492	94495492	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15533012	73695498	Rat
634329	Pia15	Pristane induced arthritis QTL 15	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	24662123	73695339	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	27023535	61843633	Rat
2298480	Eau7	Experimental allergic uveoretinitis QTL 7		0.0049	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	35509383	80509383	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29800910	91417879	Rat
2298495	Eae23	Experimental allergic encephalomyelitis QTL 23	16.93		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis duration (CMO:0001424)	10	16175525	61175525	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	20110614	65110614	Rat
2289985	Bp305	Blood pressure QTL 305			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	29076978	74076978	Rat
631530	Tls3	T-lymphoma susceptibility QTL 3	0	0.0001	thymus integrity trait (VT:0010555)	percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)	10	27587226	96099902	Rat
1354608	Cm33	Cardiac mass QTL 33	2.8		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	10	55307972	93608131	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	18035782	63035782	Rat
8552805	Bw145	Body weight QTL 145	2.2		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	10	43608793	88608793	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2293705	Bmd25	Bone mineral density QTL 25	7.1	0.0001	femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	27443787	72443787	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
7207811	Bmd90	Bone mineral density QTL 90	5.2		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	10	49943710	94943710	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31129113	76129113	Rat
7411614	Foco18	Food consumption QTL 18		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	44939359	89939359	Rat
631547	Bp87	Blood pressure QTL 87	4.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	47869129	92869129	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6864618	96620484	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	50604677	95604677	Rat
12880050	Am10	Aortic mass QTL 10		0.016	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	39503487	84503487	Rat
6893342	Cm78	Cardiac mass QTL 78	0.1	0.88	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	10	35509383	88177745	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	20110614	65110614	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	27023535	99451848	Rat

Markers in Region

D10Got227

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	59,732,945 - 59,733,123 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	61,718,601 - 61,718,778	NCBI	Rnor6.0
Rnor_5.0	10	61,440,337 - 61,440,514	UniSTS	Rnor5.0
RGSC_v3.4	10	62,179,942 - 62,180,119	UniSTS	RGSC3.4
Celera	10	58,763,474 - 58,763,651	UniSTS
Cytogenetic Map	10	q24	UniSTS

D10M11Nds1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	59,733,004 - 59,733,103 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	61,718,660 - 61,718,758	NCBI	Rnor6.0
Rnor_5.0	10	61,440,396 - 61,440,494	UniSTS	Rnor5.0
RGSC_v3.4	10	62,180,001 - 62,180,099	UniSTS	RGSC3.4
Celera	10	58,763,533 - 58,763,631	UniSTS
Cytogenetic Map	10	q24	UniSTS

D11Bhm8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	10	60,218,287 - 60,218,359 (+)	Marker Load Pipeline
mRatBN7.2	10	59,719,913 - 59,719,986 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	61,705,570 - 61,705,642	NCBI	Rnor6.0
Rnor_5.0	10	61,427,306 - 61,427,378	UniSTS	Rnor5.0
RGSC_v3.4	10	62,166,911 - 62,166,983	UniSTS	RGSC3.4
Celera	10	58,750,443 - 58,750,515	UniSTS
Cytogenetic Map	10	q24	UniSTS

Sgsm2

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	59,723,029 - 59,723,650 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	61,708,686 - 61,709,306	NCBI	Rnor6.0
Rnor_5.0	10	61,430,422 - 61,431,042	UniSTS	Rnor5.0
RGSC_v3.4	10	62,170,027 - 62,170,647	UniSTS	RGSC3.4
Celera	10	58,753,559 - 58,754,179	UniSTS
Cytogenetic Map	10	q24	UniSTS

ksks290

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	59,726,823 - 59,727,280 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	61,712,479 - 61,712,935	NCBI	Rnor6.0
Rnor_5.0	10	61,434,215 - 61,434,671	UniSTS	Rnor5.0
RGSC_v3.4	10	62,173,820 - 62,174,276	UniSTS	RGSC3.4
Celera	10	58,757,352 - 58,757,808	UniSTS
Cytogenetic Map	10	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	74	186	91	90	59	129	59	6	416	236	11	173	97	104	31	29	29

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246740	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006246741	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034298 ⟹ ENSRNOP00000032080

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	60,216,556 - 60,257,817 (-)	Ensembl
mRatBN7.2 Ensembl	10	59,718,183 - 59,759,447 (-)	Ensembl
Rnor_6.0 Ensembl	10	61,703,839 - 61,745,097 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079926 ⟹ ENSRNOP00000073988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	60,216,556 - 60,257,817 (-)	Ensembl
mRatBN7.2 Ensembl	10	59,718,183 - 59,759,447 (-)	Ensembl
Rnor_6.0 Ensembl	10	61,705,343 - 61,744,976 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092314 ⟹ ENSRNOP00000075916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	60,216,556 - 60,257,817 (-)	Ensembl
mRatBN7.2 Ensembl	10	59,718,183 - 59,759,447 (-)	Ensembl
Rnor_6.0 Ensembl	10	61,704,744 - 61,745,086 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092328

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	61,705,760 - 61,707,042 (-)	Ensembl

RefSeq Acc Id:

NM_001107020 ⟹ NP_001100490

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	60,216,556 - 60,257,817 (-)	NCBI
mRatBN7.2	10	59,718,183 - 59,759,447 (-)	NCBI
Rnor_6.0	10	61,703,839 - 61,745,097 (-)	NCBI
Rnor_5.0	10	61,425,573 - 61,467,056 (-)	NCBI
RGSC_v3.4	10	62,165,180 - 62,206,440 (-)	RGD
Celera	10	58,748,712 - 58,790,016 (-)	RGD

Sequence:

show sequence

CTGCGGGGCTCGGAAGATGGCTGCGGAGCTGAGCACCGGGCAGTGGCTGCGGCGGCTGCAGGCG
GGGAGTGCAGCGGGCGGGGGCTCCGCCTCGCGTGTGGGGCGCTGAGTCGGGAGGTGCGGAGGCG
GTGAGGGCGCACGGGGGCTTCGGGGGCCGCTTGGTGCCGCCTGCCCGCCACCTGCCGCACCATG
GGCAGCGCAGAGGACGCAGTCAAAGAAAAGCTGCTGTGGAACGTGAAAAAGGAGGTGAAGCAAA
TCATGGAAGAGGCTGTCACCAGGAAATTCGTACATGAAGATAGCAGCCACATCATTGCTCTGTG
TGGTGCTGTGGAGGCTTGCCTCCTACATCAGCTAAGGCGCCGTGCTGCGGGCTTTCTGCGAAGT
GACAAGATGGCGGCCCTGTTCACAAAAGTGGGGAAGACATGTCCCGTGGCTGGAGATATCTGCC
ACAAGGTTCAGGAGCTGCAGCAACAGGCAGAGGGCAGGAGACCCTCGGGAGGCAGCCAAGAAGC
CCTTCGGAAACAAGGTTCAAGCAGTGGGAAGACCACAGCTCTCAGCCCACAGGCCTTGAAACAC
ATATGGGTACGCACAGCACTCATGGAGAAAGTTCTGGACAGGGTTGTACAATACCTGGCCGAAA
ACTGCAGCAAGTATTACGAGAAGGAAGCGTTGTTGGCAGACCCTGTGTTTGGCCCAATCCTGGC
ATGTCTCCTAGTGGGACCCTGTGCCTTGGAATACACGAAGCTCAAGACAGCTGACCACTACTGG
ACTGACCCCTCTGCTGATGAGCTAGTTCAAAGGCACCGTATCCGGGGTCCCCCTAACCGTCAGG
ACTCCCCAGCAAAGCGTCCTGCCCTGGGGATCCGGAAGCGCCACTCTAGTGGGAGTGCTTCGGA
AGACCGGCTAGCTGCCTGTGCCCGTGAATACGTGGAGTCTCTGCACCAGAATTCAAGAACACGG
CTGCTCTATGGGAAGAACAACGTGCTGGTGCAGCCGAAGGAGGACATGGAGGCAGTCCCTGGCT
ACCTCTCCCTGCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCAACCAACTCATGAA
TGGGACTCTCGGGGACTCGGAGCTAGAAAAGAGTGTGTACTGGGACTACGCCTTGGTGGTGCCC
TTCAGTCAGATCGTCTGCGTCCACTGCCACCAGCAAAAGAGCGGTGGCACGCTTGTGCTGGTGA
GCCAGGATGGCATCCAGAGGCCGCCACTACACTTCCCACAGGGAGGACACCTGCTGTCCTTCCT
GTCATGTCTGGAGAATGGGCTGCTGCCTCGTGGACAGCTTGAGCCCCCGCTGTGGACCCAGCAG
GGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCCATTGATGCGGAGG
AGCTTGGTGTTGGACGGGCAACAGACTATGTGTTCCGGATCATCTACCCTGGACATAGGCATGA
GCACAATGCCGGCGACATGATTGAGATGCAGGGTTTTGGACCCAGCCTGACTGCCTGGCACCTG
GAGCCTCTGTGTAGCCAGGGCTCCTCCTGTCTTTCCTGCCCCTCCAGCAGCTCCCCATATGCAC
CCCCCAGTCATTGCAGCTGCACTCCTGACAGGTTGCCCCTCAGGCTGCTGTGTGAGAGCATGAA
GAGGCAGATAGTGTCCCGGGCCTTCTATGGCTGGCTAGCCTACTGTCGCCACCTGTCCACAGTG
AGGACACACCTGTCTGCACTGGTGCACCACAACATTATTCCACCGGACAGGCCCCCGGGGGCCT
CAGGGGGTCTTACCAAGGATGTGTGGAGCAAGTATCAGAAGGACAAAAAGAACTACAAGGAGCT
GGAGCTGCTTCGGCAGGTGTACTATGGGGGTGTGGAACATGAGATTCGCAAGGACGTCTGGCCC
TTCCTGCTTGGCCACTACAAGTTTGGCATGAGCAAGAAGGAGATGGAGCAGGTGGATGCAGCAG
TGGCAGCCAGGTACCAGCAGGTGCTGGCAGAGTGGAAGGCCTGCGAGGTAGTGGTGAGGCAGCG
GGAGCGGGAGGCTCACCCAGCCACGCTCACCAAGTTCTCCTCGGGCAGCAGCATCGATAGCCAC
GTACAGCGCCTTGTGCACCGGGATTCCACCATCAGCAATGATGTGTTTATCTCTGTGGATGATC
TAGAGCCCCCTGGGCCTCAGGACCCTGAAGATTCCAAACCAAAGCAGGAACGGGAACCAGGAGC
TGGGACTCCGGGCACGGCCGCTGCAGAGCAGCAGTCTGTGGAGTTTGAGTCTCCAGACTCCGGG
CTGCCTTCCTCCCGCAACTACTCCGTGGCCTCAGGCATCCAGTCCAGCCTAGATGAGGCCCAGA
GTGTGGGCTTTGAAGAAGATGGTGCTGGAGAAGAAGGCTCCGAAGAGCCAGCCACTGCAGCCCA
CACTTTCCTTGGACCCCACGATCCAGACCAGGAGAAGCTTGCACCTGCCAGTGAGCTTGAAGGC
GGGGAGGAGCTCACAGCTGTGTGTGCTGCCACCTATACTATAGAATTACTGGACACCGTGGCCT
TAAATCTGCACCGCATAGACAAGGACGTGCAGAGGTGTGACCGCAACTACTGGTACTTCACGAC
CCCCAACCTTGAGAGGCTCAGAGACATCATGTGCAGCTACGTGTGGGAGCATCTGGATATGGGT
TACGTGCAGGGCATGTGTGATCTCCTGGCACCTCTCCTAGTCATCCTTGACAATGACCAGCTGG
CCTACAGCTGCTTCAGCCACCTCATGAAGAGGATGAGCCAGAACTTCCCCAATGGGGGTGCCAT
GGACACCCACTTTGCCAACATGCGTTCCCTCATCCAGATCTTGGACTCAGAGCTATTTGAGCTG
ATGCACCAAAATGGAGACTATACCCACTTCTATTTCTGTTATCGCTGGTTCCTGCTGGATTTTA
AAAGAGAGCTGCTGTATGAGGAGGTGTTCGCAGTGTGGGAGGTGATCTGGGCGGCCAGGCACAT
CTCCTCAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGGTGGAGGCCTACAGAGAGATTATC
CGTGACAACAACATGGACTTCACTGACATCATCAAATTCTTCAATGAGCGGGCTGAGCGGCACG
ATGCTCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAAGGTGCAGATGCTCATAGACAA
CAAGTGAGGGCTGCAGGCGGCAAAGTGGAGAGCCTAGGTACCAGGCCCCTGAGCTCCAGCAGGG
AGAGGCAGAGGTCATCATAGCCCAAACTGCCTCACTCCAATCCCTCACTCCCGCCAACCCCACC
CACTCAGCTGTGTAACCTAACAAAGTGACTGTGAGTCTGGGATGTGAGTATGGGCAGTGCTGGC
CCTGCAGGGCAAGTTGGGGTCAGGATACCTGCAGATCACAGCTGGGTGGGAGGGGTCGGCCTCA
GGGAGACTGGCTGCCTTGGGGGACACCTTCTGTGTTCCCCTCAACCAACTTAGAATAGCCCCAC
TGCAGCCTCAGTCTGGACTGTTTCCCAATGCCCCTTTCCAGTCAGCCTGGGGCCCTGTAGGGTT
AGTGGGGTCTACAGTGGCCTGCACCTCATCTAGCAAGAGTTGCATAGGGCAGGGAGCTCTGTGC
CATGTCTCTCCTGAAGCCTTTCGTGGCCTCAACTAGCTGCCTATTCAGGCATGCGTCCTAGGGG
CAGGAGACCTTGGGTACCTTCCAGGCTCTCCTCAGACTCTGGGGCAGTCAGATGTGGGCCCTTG
GTGAGAGTGGCCCACCTCAGCAGCACTGCCATAGCCTCTGGCCACCAGAGTAACCCCACGAACT
CCCCACCCACTGCACAGTGACCCTCTCGTGTGTACAGTGTCACTCTCTGCACCCTGCCCTTGCT
TTCTGCACTGGAAACCCCTAGGAGTGCACATAAGCAGCATACTCGCCCACTGTGTGGTACGGAG
GGCAGTGGTCTCACTTGCTCTGCAGAACCACCCAGGGAGAGTGTAGGAAGACAGTCCTGTCACA
ACCTCCCTCCAAGGACAGGCCTGTGAGTTTTGGGATACCCATTACCTGTTTCAGACATCTATGA
ATTCCTGGGACTGAGGGATGTGGGAATGCCTGGATAGTCCTAGTTCATCCCCAGTGAGAGGCAA
GGCCAGCTCCACTTTTCACGTGCTTCAGAGTGCTGAGAAGCCTGGAAACCCAGAGGGCCCTTGG
AAGAGTTTACAGGGTTGTCAACAAAGGTCCAGCCCTTGACCTAAGGTCTAGGCATGTTGCTTGT
TTCTTCCGTCACCCCCACATTCCCACCATCTGAGCACATGCAAGCCAAGTCTGGGACCTGGAGC
CCACACCTTGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACAGACTTGCTGCAGTTGAAAAA
CACAAGAAAGAACCAGCCGCATTCTGCATATAGCACAGCCTTCCCTGCCCTCCCCTTACCCCTG
GGTACTGCACAGCCTGTGTGGGGCCAGCCTACCCCATTACCCACCCTGTTCCTGATTCCTCGGC
CTCCACCAAGCATGGGCGGCCAATGTGTGTCTGCTGTAGTGACCCTGGTTTTGTGAGGAGCAGA
ATGTATGGGGTTTTTGGTTTTGTTTTTGTTTGTTCGTTTGGTTTTGTTTTGCTCAGAAATTATA
CTCTTAAATGTAACAGACCAATAAAATGCATTTGGCAATG

hide sequence

RefSeq Acc Id:

XM_006246740 ⟹ XP_006246802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	60,216,556 - 60,257,709 (-)	NCBI
mRatBN7.2	10	59,718,183 - 59,759,446 (-)	NCBI
Rnor_6.0	10	61,703,837 - 61,745,110 (-)	NCBI
Rnor_5.0	10	61,425,573 - 61,467,056 (-)	NCBI

Sequence:

show sequence

TGCTGCCTGACGTCTGCGGGGCTCGGAAGATGGCTGCGGAGCTGAGCACCGGGCAGTGGCTGCG
GCGGCTGCAGGCGGGGAGTGCAGCGGGCGGGGGCTCCGCCTCGCGTGTGGGGCGCTGAGTCGGG
AGGTGCGGAGGCGGTGAGGGCGCACGGGGGCTTCGGGGGCCGCTTGGTGCCGCCTGCCCGCCAC
CTGCCGCACCATGGGCAGCGCAGAGGACGCAGTCAAAGAAAAGCTGCTGTGGAACGTGAAAAAG
GAGGTGAAGCAAATCATGGAAGAGGCTGTCACCAGGAAATTCGTACATGAAGATAGCAGCCACA
TCATTGCTCTGTGTGGTGCTGTGGAGGCTTGCCTCCTACATCAGCTAAGGCGCCGTGCTGCGGG
CTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACAAAAGTGGGGAAGACATGTCCCGTGGCT
GGAGATATCTGCCACAAGGTTCAGGAGCTGCAGCAACAGGCAGAGGGCAGGAGACCCTCGGGAG
GCAGCCAAGAAGCCCTTCGGAAACAAGGTTCAAGCAGTGGGAAGACCACAGCTCTCAGCCCACA
GGCCTTGAAACACATATGGGTACGCACAGCACTCATGGAGAAAGTTCTGGACAGGGTTGTACAA
TACCTGGCCGAAAACTGCAGCAAGTATTACGAGAAGGAAGCGTTGTTGGCAGACCCTGTGTTTG
GCCCAATCCTGGCATGTCTCCTAGTGGGACCCTGTGCCTTGGAATACACGAAGCTCAAGACAGC
TGACCACTACTGGACTGACCCCTCTGCTGATGAGCTAGTTCAAAGGCACCGTATCCGGGGTCCC
CCTAACCGTCAGGACTCCCCAGCAAAGCGTCCTGCCCTGGGGATCCGGAAGCGCCACTCTAGTG
GGAGTGCTTCGGAAGACCGGCTAGCTGCCTGTGCCCGTGAATACGTGGAGTCTCTGCACCAGAA
TTCAAGAACACGGCTGCTCTATGGGAAGAACAACGTGCTGGTGCAGCCGAAGGAGGACATGGAG
GCAGTCCCTGGCTACCTCTCCCTGCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTCCCA
ACCAACTCATGAATGGGACTCTCGGGGACTCGGAGCTAGAAAAGAGTGTGTACTGGGACTACGC
CTTGGTGGTGCCCTTCAGTCAGATCGTCTGCGTCCACTGCCACCAGCAAAAGAGCGGTGGCACG
CTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGCCGCCACTACACTTCCCACAGGGAGGACACC
TGCTGTCCTTCCTGTCATGTCTGGAGAATGGGCTGCTGCCTCGTGGACAGCTTGAGCCCCCGCT
GTGGACCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGGTCC
ATTGATGCGGAGGAGCTTGGTGTTGGACGGGCAACAGACTATGTGTTCCGGATCATCTACCCTG
GACATAGGCATGAGCACATCACTATTAACTACCACCACCTAGCGGCCAGCCGAGCGGCCTCGGT
GGACGATGATGAGGAAGAGGAGGATAAACTACACGCGATGCTCTCAATGATCTGCTCGCGGAAC
CTCACAGCTCCCAATCCGATGAAAGATGCCGGCGACATGATTGAGATGCAGGGTTTTGGACCCA
GCCTGACTGCCTGGCACCTGGAGCCTCTGTGTAGCCAGGGCTCCTCCTGTCTTTCCTGCCCCTC
CAGCAGCTCCCCATATGCACCCCCCAGTCATTGCAGCTGCACTCCTGACAGGTTGCCCCTCAGG
CTGCTGTGTGAGAGCATGAAGAGGCAGATAGTGTCCCGGGCCTTCTATGGCTGGCTAGCCTACT
GTCGCCACCTGTCCACAGTGAGGACACACCTGTCTGCACTGGTGCACCACAACATTATTCCACC
GGACAGGCCCCCGGGGGCCTCAGGGGGTCTTACCAAGGATGTGTGGAGCAAGTATCAGAAGGAC
AAAAAGAACTACAAGGAGCTGGAGCTGCTTCGGCAGGTGTACTATGGGGGTGTGGAACATGAGA
TTCGCAAGGACGTCTGGCCCTTCCTGCTTGGCCACTACAAGTTTGGCATGAGCAAGAAGGAGAT
GGAGCAGGTGGATGCAGCAGTGGCAGCCAGGTACCAGCAGGTGCTGGCAGAGTGGAAGGCCTGC
GAGGTAGTGGTGAGGCAGCGGGAGCGGGAGGCTCACCCAGCCACGCTCACCAAGTTCTCCTCGG
GCAGCAGCATCGATAGCCACGTACAGCGCCTTGTGCACCGGGATTCCACCATCAGCAATGATGT
GTTTATCTCTGTGGATGATCTAGAGCCCCCTGGGCCTCAGGACCCTGAAGATTCCAAACCAAAG
CAGGAACGGGAACCAGGAGCTGGGACTCCGGGCACGGCCGCTGCAGAGCAGCAGTCTGTGGAGT
TTGAGTCTCCAGACTCCGGGCTGCCTTCCTCCCGCAACTACTCCGTGGCCTCAGGCATCCAGTC
CAGCCTAGATGAGGCCCAGAGTGTGGGCTTTGAAGAAGATGGTGCTGGAGAAGAAGGCTCCGAA
GAGCCAGCCACTGCAGCCCACACTTTCCTTGGACCCCACGATCCAGACCAGGAGAAGCTTGCAC
CTGCCAGTGAGCTTGAAGGCGGGGAGGAGCTCACAGCTGTGTGTGCTGCCACCTATACTATAGA
ATTACTGGACACCGTGGCCTTAAATCTGCACCGCATAGACAAGGACGTGCAGAGGTGTGACCGC
AACTACTGGTACTTCACGACCCCCAACCTTGAGAGGCTCAGAGACATCATGTGCAGCTACGTGT
GGGAGCATCTGGATATGGGTTACGTGCAGGGCATGTGTGATCTCCTGGCACCTCTCCTAGTCAT
CCTTGACAATGACCAGCTGGCCTACAGCTGCTTCAGCCACCTCATGAAGAGGATGAGCCAGAAC
TTCCCCAATGGGGGTGCCATGGACACCCACTTTGCCAACATGCGTTCCCTCATCCAGATCTTGG
ACTCAGAGCTATTTGAGCTGATGCACCAAAATGGAGACTATACCCACTTCTATTTCTGTTATCG
CTGGTTCCTGCTGGATTTTAAAAGAGAGCTGCTGTATGAGGAGGTGTTCGCAGTGTGGGAGGTG
ATCTGGGCGGCCAGGCACATCTCCTCAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGGTGG
AGGCCTACAGAGAGATTATCCGTGACAACAACATGGACTTCACTGACATCATCAAATTCTTCAA
TGAGCGGGCTGAGCGGCACGATGCTCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCACAAG
GTGCAGATGCTCATAGACAACAAGTGAGGGCTGCAGGCGGCAAAGTGGAGAGCCTAGGTACCAG
GCCCCTGAGCTCCAGCAGGGAGAGGCAGAGGTCATCATAGCCCAAACTGCCTCACTCCAATCCC
TCACTCCCGCCAACCCCACCCACTCAGCTGTGTAACCTAACAAAGTGACTGTGAGTCTGGGATG
TGAGTATGGGCAGTGCTGGCCCTGCAGGGCAAGTTGGGGTCAGGATACCTGCAGATCACAGCTG
GGTGGGAGGGGTCGGCCTCAGGGAGACTGGCTGCCTTGGGGGACACCTTCTGTGTTCCCCTCAA
CCAACTTAGAATAGCCCCACTGCAGCCTCAGTCTGGACTGTTTCCCAATGCCCCTTTCCAGTCA
GCCTGGGGCCCTGTAGGGTTAGTGGGGTCTACAGTGGCCTGCACCTCATCTAGCAAGAGTTGCA
TAGGGCAGGGAGCTCTGTGCCATGTCTCTCCTGAAGCCTTTCGTGGCCTCAACTAGCTGCCTAT
TCAGGCATGCGTCCTAGGGGCAGGAGACCTTGGGTACCTTCCAGGCTCTCCTCAGACTCTGGGG
CAGTCAGATGTGGGCCCTTGGTGAGAGTGGCCCACCTCAGCAGCACTGCCATAGCCTCTGGCCA
CCAGAGTAACCCCACGAACTCCCCACCCACTGCACAGTGACCCTCTCGTGTGTACAGTGTCACT
CTCTGCACCCTGCCCTTGCTTTCTGCACTGGAAACCCCTAGGAGTGCACATAAGCAGCATACTC
GCCCACTGTGTGGTACGGAGGGCAGTGGTCTCACTTGCTCTGCAGAACCACCCAGGGAGAGTGT
AGGAAGACAGTCCTGTCACAACCTCCCTCCAAGGACAGGCCTGTGAGTTTTGGGATACCCATTA
CCTGTTTCAGACATCTATGAATTCCTGGGACTGAGGGATGTGGGAATGCCTGGATAGTCCTAGT
TCATCCCCAGTGAGAGGCAAGGCCAGCTCCACTTTTCACGTGCTTCAGAGTGCTGAGAAGCCTG
GAAACCCAGAGGGCCCTTGGAAGAGTTTACAGGGTTGTCAACAAAGGTCCAGCCCTTGACCTAA
GGTCTAGGCATGTTGCTTGTTTCTTCCGTCACCCCCACATTCCCACCATCTGAGCACATGCAAG
CCAAGTCTGGGACCTGGAGCCCACACCTTGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCCACA
GACTTGCTGCAGTTGAAAAACACAAGAAAGAACCAGCCGCATTCTGCATATAGCACAGCCTTCC
CTGCCCTCCCCTTACCCCTGGGTACTGCACAGCCTGTGTGGGGCCAGCCTACCCCATTACCCAC
CCTGTTCCTGATTCCTCGGCCTCCACCAAGCATGGGCGGCCAATGTGTGTCTGCTGTAGTGACC
CTGGTTTTGTGAGGAGCAGAATGTATGGGGTTTTTGGTTTTGTTTTTGTTTGTTCGTTTGGTTT
TGTTTTGCTCAGAAATTATACTCTTAAATGTAACAGACCAATAAAATGCATTTGGCAATGCC

hide sequence

RefSeq Acc Id:

XM_006246741 ⟹ XP_006246803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	60,216,556 - 60,240,966 (-)	NCBI
mRatBN7.2	10	59,718,180 - 59,742,600 (-)	NCBI
Rnor_6.0	10	61,703,837 - 61,728,972 (-)	NCBI
Rnor_5.0	10	61,425,573 - 61,467,056 (-)	NCBI

Sequence:

show sequence

CTTGAGCCACCACACCTGGCTCTGCTCACCCTTTTTGTAGGCAGAAGGTGCCATGCAGTGATAC
CATCCTGAACCTTGCTTTTGGAAGTTTCCCCTAAGCTCCTAGAGAACATCTCATTGCTTCTTAG
AGCTGAACACTACTCTCCTGGGTGAACAAACCATATCTAGTTAGCCTGATCCCTGTCTATGGAC
ACATGGGTGGTTTCCAGTTCTTTACTATTACAACTAATTGTGCGCTTACACCAGTAGGAAAAAA
AATCCCAGAAGAGGGATTGCTGGGTCAAAGTTTTCTACATCTTTGACTGAAAATACTAAACTGC
TAAATAGGAATGATGTCACTAACCCTCCCACTAGCAACATTGTAGCAGTATACCTAACTTCCAG
TATCTCTCTTCTTTGTCCCTCAAATTTTCCATTCTACATTGTAGCCCAGGCAGGGTAAACTTTC
AACCCTCCTGCCTTAGTCTCCTAGGTAGCAGACATTACAGGCTGGTGCCAGCAGATCTGACCCA
ATGTCTCCACTCTAAATGATCATTTGAATGGGTGATCCGGTTGAGACCAAGGCTGGTAGGCTTC
ATCAGCACTGTGTTCTCCAGCCCCCGGAAGCATTTGCTAATCTCCATAACTTTGTAGAGCGGGA
GGAGGCCCTCAGGCTGGGCTGGCCAGTGGTTGTCAGCTTTCCGTGGGAGGAACAGTTTATCAGT
CTTCTGTGAGTGTTCACAGCAAGGGGCTAGAGTTAAATTTAGCCATGCTTCTGCCTCTCTGAGC
TTTCCTGTCAGTGTGATGGGATGGATGACAGTGGAGAAGGTTCTCTGGGATCATTTGACCAAGC
CCTAAGAGGCACCAGAAGGTGCTGTGGAGGCTTGCCTCCTACATCAGCTAAGGCGCCGTGCTGC
GGGCTTTCTGCGAAGTGACAAGATGGCGGCCCTGTTCACAAAAGTGGGGAAGACATGTCCCGTG
GCTGGAGATATCTGCCACAAGGTTCAGGAGCTGCAGCAACAGGCAGAGGGCAGGAGACCCTCGG
GAGGCAGCCAAGAAGCCCTTCGGAAACAAGGTTCAAGCAGTGGGAAGACCACAGCTCTCAGCCC
ACAGGCCTTGAAACACATATGGGTACGCACAGCACTCATGGAGAAAGTTCTGGACAGGGTTGTA
CAATACCTGGCCGAAAACTGCAGCAAGTATTACGAGAAGGAAGCGTTGTTGGCAGACCCTGTGT
TTGGCCCAATCCTGGCATGTCTCCTAGTGGGACCCTGTGCCTTGGAATACACGAAGCTCAAGAC
AGCTGACCACTACTGGACTGACCCCTCTGCTGATGAGCTAGTTCAAAGGCACCGTATCCGGGGT
CCCCCTAACCGTCAGGACTCCCCAGCAAAGCGTCCTGCCCTGGGGATCCGGAAGCGCCACTCTA
GTGGGAGTGCTTCGGAAGACCGGCTAGCTGCCTGTGCCCGTGAATACGTGGAGTCTCTGCACCA
GAATTCAAGAACACGGCTGCTCTATGGGAAGAACAACGTGCTGGTGCAGCCGAAGGAGGACATG
GAGGCAGTCCCTGGCTACCTCTCCCTGCACCAGTCTGCAGAGAACCTAACCCTGAAGTGGACTC
CCAACCAACTCATGAATGGGACTCTCGGGGACTCGGAGCTAGAAAAGAGTGTGTACTGGGACTA
CGCCTTGGTGGTGCCCTTCAGTCAGATCGTCTGCGTCCACTGCCACCAGCAAAAGAGCGGTGGC
ACGCTTGTGCTGGTGAGCCAGGATGGCATCCAGAGGCCGCCACTACACTTCCCACAGGGAGGAC
ACCTGCTGTCCTTCCTGTCATGTCTGGAGAATGGGCTGCTGCCTCGTGGACAGCTTGAGCCCCC
GCTGTGGACCCAGCAGGGAAAGGGCAAGGTTTTCCCCAAGCTACGGAAACGCAGCAGCATTCGG
TCCATTGATGCGGAGGAGCTTGGTGTTGGACGGGCAACAGACTATGTGTTCCGGATCATCTACC
CTGGACATAGGCATGAGCACATCACTATTAACTACCACCACCTAGCGGCCAGCCGAGCGGCCTC
GGTGGACGATGATGAGGAAGAGGAGGATAAACTACACGCGATGCTCTCAATGATCTGCTCGCGG
AACCTCACAGCTCCCAATCCGATGAAAGATGCCGGCGACATGATTGAGATGCAGGGTTTTGGAC
CCAGCCTGACTGCCTGGCACCTGGAGCCTCTGTGTAGCCAGGGCTCCTCCTGTCTTTCCTGCCC
CTCCAGCAGCTCCCCATATGCACCCCCCAGTCATTGCAGCTGCACTCCTGACAGGTTGCCCCTC
AGGCTGCTGTGTGAGAGCATGAAGAGGCAGATAGTGTCCCGGGCCTTCTATGGCTGGCTAGCCT
ACTGTCGCCACCTGTCCACAGTGAGGACACACCTGTCTGCACTGGTGCACCACAACATTATTCC
ACCGGACAGGCCCCCGGGGGCCTCAGGGGGTCTTACCAAGGATGTGTGGAGCAAGTATCAGAAG
GACAAAAAGAACTACAAGGAGCTGGAGCTGCTTCGGCAGGTGTACTATGGGGGTGTGGAACATG
AGATTCGCAAGGACGTCTGGCCCTTCCTGCTTGGCCACTACAAGTTTGGCATGAGCAAGAAGGA
GATGGAGCAGGTGGATGCAGCAGTGGCAGCCAGGTACCAGCAGGTGCTGGCAGAGTGGAAGGCC
TGCGAGGTAGTGGTGAGGCAGCGGGAGCGGGAGGCTCACCCAGCCACGCTCACCAAGTTCTCCT
CGGGCAGCAGCATCGATAGCCACGTACAGCGCCTTGTGCACCGGGATTCCACCATCAGCAATGA
TGTGTTTATCTCTGTGGATGATCTAGAGCCCCCTGGGCCTCAGGACCCTGAAGATTCCAAACCA
AAGCAGGAACGGGAACCAGGAGCTGGGACTCCGGGCACGGCCGCTGCAGAGCAGCAGTCTGTGG
AGTTTGAGTCTCCAGACTCCGGGCTGCCTTCCTCCCGCAACTACTCCGTGGCCTCAGGCATCCA
GTCCAGCCTAGATGAGGCCCAGAGTGTGGGCTTTGAAGAAGATGGTGCTGGAGAAGAAGGCTCC
GAAGAGCCAGCCACTGCAGCCCACACTTTCCTTGGACCCCACGATCCAGACCAGGAGAAGCTTG
CACCTGCCAGTGAGCTTGAAGGCGGGGAGGAGCTCACAGCTGTGTGTGCTGCCACCTATACTAT
AGAATTACTGGACACCGTGGCCTTAAATCTGCACCGCATAGACAAGGACGTGCAGAGGTGTGAC
CGCAACTACTGGTACTTCACGACCCCCAACCTTGAGAGGCTCAGAGACATCATGTGCAGCTACG
TGTGGGAGCATCTGGATATGGGTTACGTGCAGGGCATGTGTGATCTCCTGGCACCTCTCCTAGT
CATCCTTGACAATGACCAGCTGGCCTACAGCTGCTTCAGCCACCTCATGAAGAGGATGAGCCAG
AACTTCCCCAATGGGGGTGCCATGGACACCCACTTTGCCAACATGCGTTCCCTCATCCAGATCT
TGGACTCAGAGCTATTTGAGCTGATGCACCAAAATGGAGACTATACCCACTTCTATTTCTGTTA
TCGCTGGTTCCTGCTGGATTTTAAAAGAGAGCTGCTGTATGAGGAGGTGTTCGCAGTGTGGGAG
GTGATCTGGGCGGCCAGGCACATCTCCTCAGAGCACTTTGTCCTGTTCATCGCCCTGGCCCTGG
TGGAGGCCTACAGAGAGATTATCCGTGACAACAACATGGACTTCACTGACATCATCAAATTCTT
CAATGAGCGGGCTGAGCGGCACGATGCTCAGGAGATCCTGCGGATTGCCCGGGACTTGGTCCAC
AAGGTGCAGATGCTCATAGACAACAAGTGAGGGCTGCAGGCGGCAAAGTGGAGAGCCTAGGTAC
CAGGCCCCTGAGCTCCAGCAGGGAGAGGCAGAGGTCATCATAGCCCAAACTGCCTCACTCCAAT
CCCTCACTCCCGCCAACCCCACCCACTCAGCTGTGTAACCTAACAAAGTGACTGTGAGTCTGGG
ATGTGAGTATGGGCAGTGCTGGCCCTGCAGGGCAAGTTGGGGTCAGGATACCTGCAGATCACAG
CTGGGTGGGAGGGGTCGGCCTCAGGGAGACTGGCTGCCTTGGGGGACACCTTCTGTGTTCCCCT
CAACCAACTTAGAATAGCCCCACTGCAGCCTCAGTCTGGACTGTTTCCCAATGCCCCTTTCCAG
TCAGCCTGGGGCCCTGTAGGGTTAGTGGGGTCTACAGTGGCCTGCACCTCATCTAGCAAGAGTT
GCATAGGGCAGGGAGCTCTGTGCCATGTCTCTCCTGAAGCCTTTCGTGGCCTCAACTAGCTGCC
TATTCAGGCATGCGTCCTAGGGGCAGGAGACCTTGGGTACCTTCCAGGCTCTCCTCAGACTCTG
GGGCAGTCAGATGTGGGCCCTTGGTGAGAGTGGCCCACCTCAGCAGCACTGCCATAGCCTCTGG
CCACCAGAGTAACCCCACGAACTCCCCACCCACTGCACAGTGACCCTCTCGTGTGTACAGTGTC
ACTCTCTGCACCCTGCCCTTGCTTTCTGCACTGGAAACCCCTAGGAGTGCACATAAGCAGCATA
CTCGCCCACTGTGTGGTACGGAGGGCAGTGGTCTCACTTGCTCTGCAGAACCACCCAGGGAGAG
TGTAGGAAGACAGTCCTGTCACAACCTCCCTCCAAGGACAGGCCTGTGAGTTTTGGGATACCCA
TTACCTGTTTCAGACATCTATGAATTCCTGGGACTGAGGGATGTGGGAATGCCTGGATAGTCCT
AGTTCATCCCCAGTGAGAGGCAAGGCCAGCTCCACTTTTCACGTGCTTCAGAGTGCTGAGAAGC
CTGGAAACCCAGAGGGCCCTTGGAAGAGTTTACAGGGTTGTCAACAAAGGTCCAGCCCTTGACC
TAAGGTCTAGGCATGTTGCTTGTTTCTTCCGTCACCCCCACATTCCCACCATCTGAGCACATGC
AAGCCAAGTCTGGGACCTGGAGCCCACACCTTGCCTGGCTCCTGCCTAGAAGTCACCAAGGTCC
ACAGACTTGCTGCAGTTGAAAAACACAAGAAAGAACCAGCCGCATTCTGCATATAGCACAGCCT
TCCCTGCCCTCCCCTTACCCCTGGGTACTGCACAGCCTGTGTGGGGCCAGCCTACCCCATTACC
CACCCTGTTCCTGATTCCTCGGCCTCCACCAAGCATGGGCGGCCAATGTGTGTCTGCTGTAGTG
ACCCTGGTTTTGTGAGGAGCAGAATGTATGGGGTTTTTGGTTTTGTTTTTGTTTGTTCGTTTGG
TTTTGTTTTGCTCAGAAATTATACTCTTAAATGTAACAGACCAATAAAATGCATTTGGCAATGC
C

hide sequence

RefSeq Acc Id:

XM_039086013 ⟹ XP_038941941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	60,216,556 - 60,258,199 (-)	NCBI
mRatBN7.2	10	59,718,183 - 59,759,822 (-)	NCBI

RefSeq Acc Id:

XM_063269061 ⟹ XP_063125131

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	60,221,312 - 60,257,709 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100490	(Get FASTA)	NCBI Sequence Viewer
	NP_001427045	(Get FASTA)	NCBI Sequence Viewer
	XP_006246802	(Get FASTA)	NCBI Sequence Viewer
	XP_006246803	(Get FASTA)	NCBI Sequence Viewer
	XP_038941941	(Get FASTA)	NCBI Sequence Viewer
	XP_063125131	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM05191	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032080
	ENSRNOP00000032080.4
	ENSRNOP00000073988.3
	ENSRNOP00000075916
	ENSRNOP00000075916.1

RefSeq Acc Id:

NP_001100490 ⟸ NM_001107020

- UniProtKB:

D3ZW66 (UniProtKB/TrEMBL), A6HGN6 (UniProtKB/TrEMBL), A0A0G2K6Y4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLR
SDKMAALFTKVGKTCPVAGDICHKVQELQQQAEGRRPSGGSQEALRKQGSSSGKTTALSPQALK
HIWVRTALMEKVLDRVVQYLAENCSKYYEKEALLADPVFGPILACLLVGPCALEYTKLKTADHY
WTDPSADELVQRHRIRGPPNRQDSPAKRPALGIRKRHSSGSASEDRLAACAREYVESLHQNSRT
RLLYGKNNVLVQPKEDMEAVPGYLSLHQSAENLTLKWTPNQLMNGTLGDSELEKSVYWDYALVV
PFSQIVCVHCHQQKSGGTLVLVSQDGIQRPPLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQ
QGKGKVFPKLRKRSSIRSIDAEELGVGRATDYVFRIIYPGHRHEHNAGDMIEMQGFGPSLTAWH
LEPLCSQGSSCLSCPSSSSPYAPPSHCSCTPDRLPLRLLCESMKRQIVSRAFYGWLAYCRHLST
VRTHLSALVHHNIIPPDRPPGASGGLTKDVWSKYQKDKKNYKELELLRQVYYGGVEHEIRKDVW
PFLLGHYKFGMSKKEMEQVDAAVAARYQQVLAEWKACEVVVRQREREAHPATLTKFSSGSSIDS
HVQRLVHRDSTISNDVFISVDDLEPPGPQDPEDSKPKQEREPGAGTPGTAAAEQQSVEFESPDS
GLPSSRNYSVASGIQSSLDEAQSVGFEEDGAGEEGSEEPATAAHTFLGPHDPDQEKLAPASELE
GGEELTAVCAATYTIELLDTVALNLHRIDKDVQRCDRNYWYFTTPNLERLRDIMCSYVWEHLDM
GYVQGMCDLLAPLLVILDNDQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFE
LMHQNGDYTHFYFCYRWFLLDFKRELLYEEVFAVWEVIWAARHISSEHFVLFIALALVEAYREI
IRDNNMDFTDIIKFFNERAERHDAQEILRIARDLVHKVQMLIDNK

hide sequence

RefSeq Acc Id:

XP_006246802 ⟸ XM_006246740

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGSAEDAVKEKLLWNVKKEVKQIMEEAVTRKFVHEDSSHIIALCGAVEACLLHQLRRRAAGFLR
SDKMAALFTKVGKTCPVAGDICHKVQELQQQAEGRRPSGGSQEALRKQGSSSGKTTALSPQALK
HIWVRTALMEKVLDRVVQYLAENCSKYYEKEALLADPVFGPILACLLVGPCALEYTKLKTADHY
WTDPSADELVQRHRIRGPPNRQDSPAKRPALGIRKRHSSGSASEDRLAACAREYVESLHQNSRT
RLLYGKNNVLVQPKEDMEAVPGYLSLHQSAENLTLKWTPNQLMNGTLGDSELEKSVYWDYALVV
PFSQIVCVHCHQQKSGGTLVLVSQDGIQRPPLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQ
QGKGKVFPKLRKRSSIRSIDAEELGVGRATDYVFRIIYPGHRHEHITINYHHLAASRAASVDDD
EEEEDKLHAMLSMICSRNLTAPNPMKDAGDMIEMQGFGPSLTAWHLEPLCSQGSSCLSCPSSSS
PYAPPSHCSCTPDRLPLRLLCESMKRQIVSRAFYGWLAYCRHLSTVRTHLSALVHHNIIPPDRP
PGASGGLTKDVWSKYQKDKKNYKELELLRQVYYGGVEHEIRKDVWPFLLGHYKFGMSKKEMEQV
DAAVAARYQQVLAEWKACEVVVRQREREAHPATLTKFSSGSSIDSHVQRLVHRDSTISNDVFIS
VDDLEPPGPQDPEDSKPKQEREPGAGTPGTAAAEQQSVEFESPDSGLPSSRNYSVASGIQSSLD
EAQSVGFEEDGAGEEGSEEPATAAHTFLGPHDPDQEKLAPASELEGGEELTAVCAATYTIELLD
TVALNLHRIDKDVQRCDRNYWYFTTPNLERLRDIMCSYVWEHLDMGYVQGMCDLLAPLLVILDN
DQLAYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFL
LDFKRELLYEEVFAVWEVIWAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERA
ERHDAQEILRIARDLVHKVQMLIDNK

hide sequence

RefSeq Acc Id:	XP_006246803 ⟸ XM_006246741
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K6Y4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALFTKVGKTCPVAGDICHKVQELQQQAEGRRPSGGSQEALRKQGSSSGKTTALSPQALKHIW VRTALMEKVLDRVVQYLAENCSKYYEKEALLADPVFGPILACLLVGPCALEYTKLKTADHYWTD PSADELVQRHRIRGPPNRQDSPAKRPALGIRKRHSSGSASEDRLAACAREYVESLHQNSRTRLL YGKNNVLVQPKEDMEAVPGYLSLHQSAENLTLKWTPNQLMNGTLGDSELEKSVYWDYALVVPFS QIVCVHCHQQKSGGTLVLVSQDGIQRPPLHFPQGGHLLSFLSCLENGLLPRGQLEPPLWTQQGK GKVFPKLRKRSSIRSIDAEELGVGRATDYVFRIIYPGHRHEHITINYHHLAASRAASVDDDEEE EDKLHAMLSMICSRNLTAPNPMKDAGDMIEMQGFGPSLTAWHLEPLCSQGSSCLSCPSSSSPYA PPSHCSCTPDRLPLRLLCESMKRQIVSRAFYGWLAYCRHLSTVRTHLSALVHHNIIPPDRPPGA SGGLTKDVWSKYQKDKKNYKELELLRQVYYGGVEHEIRKDVWPFLLGHYKFGMSKKEMEQVDAA VAARYQQVLAEWKACEVVVRQREREAHPATLTKFSSGSSIDSHVQRLVHRDSTISNDVFISVDD LEPPGPQDPEDSKPKQEREPGAGTPGTAAAEQQSVEFESPDSGLPSSRNYSVASGIQSSLDEAQ SVGFEEDGAGEEGSEEPATAAHTFLGPHDPDQEKLAPASELEGGEELTAVCAATYTIELLDTVA LNLHRIDKDVQRCDRNYWYFTTPNLERLRDIMCSYVWEHLDMGYVQGMCDLLAPLLVILDNDQL AYSCFSHLMKRMSQNFPNGGAMDTHFANMRSLIQILDSELFELMHQNGDYTHFYFCYRWFLLDF KRELLYEEVFAVWEVIWAARHISSEHFVLFIALALVEAYREIIRDNNMDFTDIIKFFNERAERH DAQEILRIARDLVHKVQMLIDNK hide sequence

Ensembl Acc Id:

ENSRNOP00000075916 ⟸ ENSRNOT00000092314

Ensembl Acc Id:

ENSRNOP00000073988 ⟸ ENSRNOT00000079926

Ensembl Acc Id:

ENSRNOP00000032080 ⟸ ENSRNOT00000034298

RefSeq Acc Id:	XP_038941941 ⟸ XM_039086013
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K6Y4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125131 ⟸ XM_063269061
- Peptide Label:	isoform X4

Protein Domains

Rab-GAP TBC RUN

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0U1RS33-F1-model_v2	AlphaFold	A0A0U1RS33	1-1050	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697417

Promoter ID:

EPDNEW_R7940

Type:

multiple initiation site

Name:

Sgsm2_1

Description:

small G protein signaling modulator 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	61,745,095 - 61,745,155	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306957	AgrOrtholog
BioCyc Gene	G2FUF-24245	BioCyc
Ensembl Genes	ENSRNOG00000027194	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034298	ENTREZGENE
	ENSRNOT00000034298.8	UniProtKB/TrEMBL
	ENSRNOT00000079926.4	UniProtKB/TrEMBL
	ENSRNOT00000092314	ENTREZGENE
	ENSRNOT00000092314.3	UniProtKB/TrEMBL
Gene3D-CATH	1.20.58.900	UniProtKB/TrEMBL
	2.30.29.230	UniProtKB/TrEMBL
	putative rabgap domain of human tbc1 domain family member 14 like domains	UniProtKB/TrEMBL
	Ypt/Rab-GAP domain of gyp1p, domain 3	UniProtKB/TrEMBL
InterPro	Rab-GTPase_TBC_sf	UniProtKB/TrEMBL
	RabGAP_TBC	UniProtKB/TrEMBL
	Run	UniProtKB/TrEMBL
	Run_dom_sf	UniProtKB/TrEMBL
	RUN_SGSM2	UniProtKB/TrEMBL
	SGSM1/2	UniProtKB/TrEMBL
	SGSM1/2_RBD	UniProtKB/TrEMBL
KEGG Report	rno:303304	UniProtKB/TrEMBL
NCBI Gene	303304	ENTREZGENE
PANTHER	SMALL G PROTEIN SIGNALING MODULATOR 2	UniProtKB/TrEMBL
	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	UniProtKB/TrEMBL
Pfam	PH_RBD	UniProtKB/TrEMBL
	RUN	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
PhenoGen	Sgsm2	PhenoGen
PROSITE	RUN	UniProtKB/TrEMBL
	TBC_RABGAP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000027194	RatGTEx
SMART	RUN	UniProtKB/TrEMBL
	TBC	UniProtKB/TrEMBL
Superfamily-SCOP	RabGAP_TBC	UniProtKB/TrEMBL
	SSF140741	UniProtKB/TrEMBL
UniProt	A0A0G2K6Y4	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U1RS33	ENTREZGENE, UniProtKB/TrEMBL
	A6HGN6	ENTREZGENE, UniProtKB/TrEMBL
	D3ZW66	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Sgsm2	small G protein signaling modulator 2	Rutbc1_predicted	RUN and TBC1 domain containing 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Rutbc1_predicted	RUN and TBC1 domain containing 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar