Uqcc2 (ubiquinol-cytochrome c reductase complex assembly factor 2) - Rat Genome Database

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Gene: Uqcc2 (ubiquinol-cytochrome c reductase complex assembly factor 2) Rattus norvegicus
Analyze
Symbol: Uqcc2
Name: ubiquinol-cytochrome c reductase complex assembly factor 2
RGD ID: 1306917
Description: Predicted to be involved in several processes, including mitochondrial respiratory chain complex III assembly; positive regulation of mitochondrial translation; and regulation of insulin secretion. Predicted to be located in mitochondrial inner membrane; mitochondrial intermembrane space; and mitochondrial nucleoid. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 7. Orthologous to human UQCC2 (ubiquinol-cytochrome c reductase complex assembly factor 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC361805; LOC361805; M19; mitochondrial nucleoid factor 1; mitochondrial protein M19; Mnf1; RGD1306917; similar to RIKEN cDNA 2900010M23; ubiquinol-cytochrome-c reductase complex assembly factor 2; uncharacterized protein LOC361805
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,204,682 - 5,217,080 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1712,088,037 - 12,088,606 (-)EnsemblGRCr8
GRCr8 Ensembl205,204,682 - 5,216,973 (-)EnsemblGRCr8
mRatBN7.2205,202,837 - 5,214,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1711,936,099 - 11,936,668 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl205,202,837 - 5,214,164 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,928,059 - 5,939,883 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,289,808 - 5,301,632 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,769,105 - 5,780,935 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,712,200 - 5,723,902 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,712,203 - 5,723,902 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,775,855 - 7,787,605 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,358,000 - 5,369,728 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,782,273 - 6,793,956 (-)NCBICelera
RGSC_v3.1205,358,230 - 5,371,733 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
chlordecone  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diclofenac  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (EXP,ISO)
fenthion  (ISO)
finasteride  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
hydralazine  (ISO)
ibuprofen  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
nimesulide  (EXP)
nitrates  (ISO)
nobiletin  (ISO)
okadaic acid  (ISO)
ozone  (EXP)
panobinostat  (ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
potassium chromate  (ISO)
propiconazole  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
sulindac  (EXP)
temozolomide  (ISO)
tetrachloroethene  (ISO)
thiram  (ISO)
toluene  (EXP)
tris(2-butoxyethyl) phosphate  (ISO)
tungsten  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrial inner membrane  (IEA,ISO,ISS)
mitochondrial intermembrane space  (IEA,ISO,ISS)
mitochondrial matrix  (IBA,IEA,ISO,ISS)
mitochondrial nucleoid  (IEA,ISO,ISS)
mitochondrion  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18614015   PMID:19643811   PMID:22363741   PMID:24385928   PMID:35352799  


Genomics

Comparative Map Data
Uqcc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8205,204,682 - 5,217,080 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1712,088,037 - 12,088,606 (-)EnsemblGRCr8
GRCr8 Ensembl205,204,682 - 5,216,973 (-)EnsemblGRCr8
mRatBN7.2205,202,837 - 5,214,541 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1711,936,099 - 11,936,668 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl205,202,837 - 5,214,164 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx205,928,059 - 5,939,883 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0205,289,808 - 5,301,632 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0205,769,105 - 5,780,935 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,712,200 - 5,723,902 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,712,203 - 5,723,902 (-)Ensemblrn6Rnor6.0
Rnor_5.0207,775,855 - 7,787,605 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4205,358,000 - 5,369,728 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera206,782,273 - 6,793,956 (-)NCBICelera
RGSC_v3.1205,358,230 - 5,371,733 (-)NCBI
Cytogenetic Map20p12NCBI
UQCC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38633,696,764 - 33,711,700 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl633,690,635 - 33,711,727 (-)Ensemblhg38GRCh38
GRCh37633,664,541 - 33,679,477 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36633,773,324 - 33,787,482 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34633,773,323 - 33,787,482NCBI
Celera635,219,736 - 35,233,893 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef633,406,194 - 33,421,183 (-)NCBIHuRef
CHM1_1633,666,828 - 33,681,817 (-)NCBICHM1_1
T2T-CHM13v2.0633,517,949 - 33,532,883 (-)NCBIT2T-CHM13v2.0
Uqcc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391727,341,639 - 27,352,865 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1727,341,637 - 27,352,890 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381727,122,665 - 27,133,891 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1727,122,663 - 27,133,916 (-)Ensemblmm10GRCm38
MGSCv371727,259,610 - 27,270,836 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361726,850,254 - 26,861,480 (-)NCBIMGSCv36mm8
Celera1727,658,935 - 27,670,148 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.75NCBI
LOC102009757
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554372,107,475 - 2,119,892 (-)Ensembl
ChiLan1.0NW_0049554372,107,475 - 2,119,892 (-)NCBIChiLan1.0ChiLan1.0
LOC100982351
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2548,176,491 - 48,190,661 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1644,043,633 - 44,057,778 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0633,270,785 - 33,284,931 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1634,379,212 - 34,393,373 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl634,379,212 - 34,393,373 (-)EnsemblpanPan2panpan1.1
UQCC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1123,050,329 - 3,063,831 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl123,050,329 - 3,063,801 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha123,066,234 - 3,079,732 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0123,382,293 - 3,395,793 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl123,382,293 - 3,395,766 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1123,048,991 - 3,062,492 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0123,130,312 - 3,144,071 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0123,228,320 - 3,241,835 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101975274
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494638,706,210 - 38,718,848 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647625,241,369 - 25,254,171 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647625,241,426 - 25,254,057 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UQCC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl729,899,043 - 29,929,795 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1729,902,089 - 29,929,802 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2734,509,875 - 34,537,584 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UQCC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11738,366,871 - 38,380,841 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1738,366,907 - 38,380,841 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604433,536,834 - 33,550,765 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101706352
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475423,215,962 - 23,227,895 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475423,215,920 - 23,227,895 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116887354
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1186,675,724 - 6,687,561 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Uqcc2
65 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:115
Count of miRNA genes:93
Interacting mature miRNAs:99
Transcripts:ENSRNOT00000036871
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
AI790199  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.01714,015,131 - 14,015,465NCBIRnor5.0
Rnor_5.0843,539,493 - 43,539,624NCBIRnor5.0
RGSC_v3.4843,846,832 - 43,846,962UniSTSRGSC3.4
RGSC_v3.41717,635,887 - 17,636,176UniSTSRGSC3.4
Celera840,844,392 - 40,844,522UniSTS
Celera1711,698,232 - 11,698,521UniSTS
Cytogenetic Map8q22UniSTS
Cytogenetic Map17p14UniSTS
Cytogenetic Map20p12UniSTS
RH130334  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21711,936,063 - 11,936,419 (+)MAPPERmRatBN7.2
mRatBN7.21711,936,063 - 11,936,435 (+)MAPPERmRatBN7.2
Rnor_6.01711,915,378 - 11,915,777NCBIRnor6.0
Rnor_6.01711,915,378 - 11,915,733NCBIRnor6.0
Rnor_5.01714,014,969 - 14,015,324UniSTSRnor5.0
Rnor_5.01714,014,969 - 14,015,368UniSTSRnor5.0
RGSC_v3.41717,635,724 - 17,636,079UniSTSRGSC3.4
Celera1711,698,069 - 11,698,424UniSTS
RH 3.4 Map17112.1UniSTS
Cytogenetic Map20p12UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000036871   ⟹   ENSRNOP00000036200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,204,682 - 5,216,008 (-)Ensembl
mRatBN7.2 Ensembl205,202,837 - 5,214,164 (-)Ensembl
Rnor_6.0 Ensembl205,712,203 - 5,723,902 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000046385   ⟹   ENSRNOP00000046914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1712,088,037 - 12,088,606 (-)Ensembl
mRatBN7.2 Ensembl1711,936,099 - 11,936,668 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092533   ⟹   ENSRNOP00000075807
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,712,203 - 5,723,737 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140157   ⟹   ENSRNOP00000103797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl205,204,682 - 5,216,973 (-)Ensembl
RefSeq Acc Id: NM_001108528   ⟹   NP_001101998
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,682 - 5,216,383 (-)NCBI
mRatBN7.2205,202,837 - 5,214,539 (-)NCBI
Rnor_6.0205,712,200 - 5,723,902 (-)NCBI
Rnor_5.0207,775,855 - 7,787,605 (-)NCBI
RGSC_v3.4205,358,000 - 5,369,728 (-)RGD
Celera206,782,273 - 6,793,956 (-)RGD
Sequence:
RefSeq Acc Id: XM_039098811   ⟹   XP_038954739
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,217,080 (-)NCBI
mRatBN7.2205,202,838 - 5,214,541 (-)NCBI
RefSeq Acc Id: XM_039098812   ⟹   XP_038954740
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,215,699 (-)NCBI
mRatBN7.2205,202,838 - 5,209,149 (-)NCBI
RefSeq Acc Id: XM_039098813   ⟹   XP_038954741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,210,301 (-)NCBI
mRatBN7.2205,202,838 - 5,208,232 (-)NCBI
RefSeq Acc Id: XM_063279213   ⟹   XP_063135283
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,217,080 (-)NCBI
RefSeq Acc Id: XM_063279214   ⟹   XP_063135284
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,215,738 (-)NCBI
RefSeq Acc Id: XM_063279215   ⟹   XP_063135285
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,215,703 (-)NCBI
RefSeq Acc Id: XM_063279216   ⟹   XP_063135286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8205,204,685 - 5,215,726 (-)NCBI
RefSeq Acc Id: NP_001101998   ⟸   NM_001108528
- UniProtKB: B5DFN3 (UniProtKB/Swiss-Prot),   D3Z949 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075807   ⟸   ENSRNOT00000092533
Ensembl Acc Id: ENSRNOP00000036200   ⟸   ENSRNOT00000036871
RefSeq Acc Id: XP_038954739   ⟸   XM_039098811
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954740   ⟸   XM_039098812
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954741   ⟸   XM_039098813
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135283   ⟸   XM_063279213
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135284   ⟸   XM_063279214
- Peptide Label: isoform X2
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135286   ⟸   XM_063279216
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135285   ⟸   XM_063279215
- Peptide Label: isoform X3
- UniProtKB: A0A8L2QIN0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000046914   ⟸   ENSRNOT00000046385
Ensembl Acc Id: ENSRNOP00000103797   ⟸   ENSRNOT00000140157

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DFN3-F1-model_v2 AlphaFold B5DFN3 1-136 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701428
Promoter ID:EPDNEW_R11950
Type:multiple initiation site
Name:Uqcc2_1
Description:ubiquinol-cytochrome c reductase complex assembly factor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,723,871 - 5,723,931EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306917 AgrOrtholog
BioCyc Gene G2FUF-4492 BioCyc
Ensembl Genes ENSRNOG00000025909 Ensembl, ENTREZGENE
  ENSRNOG00000028997 Ensembl
Ensembl Transcript ENSRNOT00000036871 ENTREZGENE
InterPro UQCC2 UniProtKB/Swiss-Prot
KEGG Report rno:361805 UniProtKB/Swiss-Prot
NCBI Gene 361805 ENTREZGENE
PANTHER PTHR34260 UniProtKB/Swiss-Prot
  UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX ASSEMBLY FACTOR 2 UniProtKB/Swiss-Prot
Pfam UQCC2_CBP6 UniProtKB/Swiss-Prot
PhenoGen Uqcc2 PhenoGen
RatGTEx ENSRNOG00000025909 RatGTEx
  ENSRNOG00000028997 RatGTEx
UniProt A0A8L2QIN0 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L3G9_RAT UniProtKB/TrEMBL
  B5DFN3 ENTREZGENE
  D3Z949 ENTREZGENE, UniProtKB/TrEMBL
  UQCC2_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-11-22 Uqcc2  ubiquinol-cytochrome c reductase complex assembly factor 2  Mnf1  mitochondrial nucleoid factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Mnf1  mitochondrial nucleoid factor 1  LOC687308  hypothetical protein LOC687308  Data merged from RGD:1586589 1643240 APPROVED
2012-10-10 Mnf1  mitochondrial nucleoid factor 1  RGD1306917  similar to RIKEN cDNA 2900010M23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1306917  similar to RIKEN cDNA 2900010M23   RGD1306917_predicted  similar to RIKEN cDNA 2900010M23 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-19 LOC687308  hypothetical protein LOC687308      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1306917_predicted  similar to RIKEN cDNA 2900010M23 (predicted)  LOC361805_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC361805_predicted  similar to RIKEN cDNA 2900010M23 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL