Rpa3 (replication protein A3) - Rat Genome Database

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Gene: Rpa3 (replication protein A3) Rattus norvegicus
Analyze
Symbol: Rpa3
Name: replication protein A3
RGD ID: 1306810
Description: Predicted to enable damaged DNA binding activity and single-stranded DNA binding activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within regulation of cell population proliferation and regulation of mitotic cell cycle. Part of DNA replication factor A complex. Orthologous to human RPA3 (replication protein A3); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; DNA replication pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC296883; replication protein A 14 kDa subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8437,270,966 - 37,273,997 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl437,270,966 - 37,274,183 (-)EnsemblGRCr8
mRatBN7.2436,304,649 - 36,307,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl436,304,651 - 36,307,709 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx441,272,230 - 41,275,262 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0437,198,431 - 37,201,463 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0435,609,727 - 35,612,758 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0434,279,320 - 34,282,351 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,279,320 - 34,282,351 (-)Ensemblrn6Rnor6.0
Rnor_5.0434,139,498 - 34,142,529 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4433,304,334 - 33,307,365 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera431,808,230 - 31,811,261 (-)NCBICelera
RGSC_v3.1433,422,871 - 33,425,905 (-)NCBI
Cytogenetic Map4q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-citrinin  (ISO)
(-)-quinic acid  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aconitine  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
amitrole  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buspirone  (EXP)
cadmium dichloride  (ISO)
cannabidiol  (ISO)
CGP 52608  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenpyroximate  (ISO)
fenthion  (ISO)
folic acid  (ISO)
fulvestrant  (ISO)
furosemide  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
hydrogen peroxide  (ISO)
hydroxytyrosol  (ISO)
inulin  (ISO)
ivermectin  (ISO)
kaempferol  (ISO)
lead diacetate  (EXP)
methidathion  (ISO)
methimazole  (EXP)
N-(6-acetamidohexyl)acetamide  (ISO)
nickel subsulfide  (ISO)
ouabain  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
poly(propylene imine) macromolecule  (ISO)
potassium dichromate  (ISO)
quercetin  (ISO)
Rebamipide  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
urethane  (ISO)
usnic acid  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Mechanisms and functions of DNA mismatch repair. Li GM Cell Res. 2008 Jan;18(1):85-98.
4. Calmodulin is involved in the induction of DNA polymerases alpha and delta activities in normal rat kidney cells activated to proliferate. Lopez-Girona A, etal., Biochem Biophys Res Commun. 1995 Dec 14;217(2):566-74.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. The multi-replication protein A (RPA) system--a new perspective. Sakaguchi K, etal., FEBS J. 2009 Feb;276(4):943-63. doi: 10.1111/j.1742-4658.2008.06841.x. Epub 2009 Jan 12.
Additional References at PubMed
PMID:7700386   PMID:9430682   PMID:9765279   PMID:11927569   PMID:12477932   PMID:17765923   PMID:19010961   PMID:21482754  


Genomics

Comparative Map Data
Rpa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8437,270,966 - 37,273,997 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl437,270,966 - 37,274,183 (-)EnsemblGRCr8
mRatBN7.2436,304,649 - 36,307,755 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl436,304,651 - 36,307,709 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx441,272,230 - 41,275,262 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0437,198,431 - 37,201,463 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0435,609,727 - 35,612,758 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0434,279,320 - 34,282,351 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,279,320 - 34,282,351 (-)Ensemblrn6Rnor6.0
Rnor_5.0434,139,498 - 34,142,529 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4433,304,334 - 33,307,365 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera431,808,230 - 31,811,261 (-)NCBICelera
RGSC_v3.1433,422,871 - 33,425,905 (-)NCBI
Cytogenetic Map4q21NCBI
RPA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3877,636,518 - 7,718,607 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl77,634,843 - 7,718,607 (-)Ensemblhg38GRCh38
GRCh3777,676,149 - 7,758,238 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3677,643,100 - 7,724,763 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3477,449,816 - 7,531,478NCBI
Celera77,644,982 - 7,725,987 (-)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef77,525,171 - 7,607,577 (-)NCBIHuRef
CHM1_177,676,293 - 7,757,838 (-)NCBICHM1_1
T2T-CHM13v2.077,754,317 - 7,837,139 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v277,723,782 - 7,804,410 (-)NCBI
Rpa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3968,255,936 - 8,259,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl68,255,936 - 8,259,173 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm3868,255,936 - 8,259,141 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl68,255,936 - 8,259,173 (-)Ensemblmm10GRCm38
MGSCv3768,205,936 - 8,209,141 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3668,205,937 - 8,209,113 (-)NCBIMGSCv36mm8
Celera68,397,638 - 8,400,833 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map63.53NCBI
Rpa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543214,723,751 - 14,727,290 (-)Ensembl
ChiLan1.0NW_00495543214,723,933 - 14,727,356 (-)NCBIChiLan1.0ChiLan1.0
RPA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2612,536,575 - 12,540,340 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1760,861,290 - 60,864,770 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v078,361,623 - 8,365,098 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.177,713,632 - 7,794,199 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl77,713,629 - 7,717,169 (-)EnsemblpanPan2panpan1.1
RPA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11423,230,447 - 23,234,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl112,893,352 - 2,893,717 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1422,805,480 - 22,809,588 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01423,045,005 - 23,049,117 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1423,042,030 - 23,049,635 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11423,197,309 - 23,201,240 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01422,930,101 - 22,934,209 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01423,187,728 - 23,191,835 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511836,592,667 - 36,596,130 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365852,266,706 - 2,272,259 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365852,267,113 - 2,270,635 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl977,910,881 - 77,937,060 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1977,910,876 - 77,914,872 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RPA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12150,570,027 - 50,574,270 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2150,570,751 - 50,574,216 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604253,812,402 - 53,816,643 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248135,247,033 - 5,253,413 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248135,248,794 - 5,252,264 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpa3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v16130,142,686 - 130,145,829 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpa3
12 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:12
Interacting mature miRNAs:15
Transcripts:ENSRNOT00000011123
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)41308014658080146Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41103870656038706Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43539660045429897Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41103870656038706Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42228845340471598Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4589457557613242Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41103870656038706Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4145429897Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41103870656038706Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41103870656038706Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4140471598Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4588999950889999Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41103870656038706Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43353881653719714Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42228845345429897Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41075870140490708Rat

Markers in Region
RH141236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,908,680 - 45,908,881 (+)MAPPERmRatBN7.2
Rnor_6.01251,965,412 - 51,965,612NCBIRnor6.0
Rnor_5.01253,703,763 - 53,703,963UniSTSRnor5.0
RGSC_v3.41246,053,215 - 46,053,415UniSTSRGSC3.4
Celera1247,467,641 - 47,467,841UniSTS
Cytogenetic Map12q16UniSTS
Cytogenetic Map4q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000011123   ⟹   ENSRNOP00000011123
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl437,270,966 - 37,274,183 (-)Ensembl
mRatBN7.2 Ensembl436,304,651 - 36,307,709 (-)Ensembl
Rnor_6.0 Ensembl434,279,320 - 34,282,351 (-)Ensembl
RefSeq Acc Id: NM_001106584   ⟹   NP_001100054
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8437,270,966 - 37,273,997 (-)NCBI
mRatBN7.2436,304,650 - 36,307,682 (-)NCBI
Rnor_6.0434,279,320 - 34,282,351 (-)NCBI
Rnor_5.0434,139,498 - 34,142,529 (-)NCBI
RGSC_v3.4433,304,334 - 33,307,365 (-)RGD
Celera431,808,230 - 31,811,261 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100054 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15057 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000011123.6
RefSeq Acc Id: NP_001100054   ⟸   NM_001106584
- UniProtKB: D4A845 (UniProtKB/TrEMBL),   A6IDX0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000011123   ⟸   ENSRNOT00000011123

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A845-F1-model_v2 AlphaFold D4A845 1-121 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692873
Promoter ID:EPDNEW_R3398
Type:initiation region
Name:Rpa3_1
Description:replication protein A3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0434,282,370 - 34,282,430EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306810 AgrOrtholog
BioCyc Gene G2FUF-45660 BioCyc
Ensembl Genes ENSRNOG00000008309 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011123.7 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.140 UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Rep_factor-A_3 UniProtKB/TrEMBL
KEGG Report rno:296883 UniProtKB/TrEMBL
NCBI Gene 296883 ENTREZGENE
PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT UniProtKB/TrEMBL
  REPLICATION PROTEIN A3 UniProtKB/TrEMBL
Pfam Rep_fac-A_3 UniProtKB/TrEMBL
PhenoGen Rpa3 PhenoGen
RatGTEx ENSRNOG00000008309 RatGTEx
Superfamily-SCOP Nucleic_acid_OB UniProtKB/TrEMBL
UniProt A6IDX0 ENTREZGENE, UniProtKB/TrEMBL
  D4A845 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Rpa3  replication protein A3   Rpa3_predicted  replication protein A3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rpa3_predicted  replication protein A3 (predicted)      Symbol and Name status set to approved 70820 APPROVED