Ppp2r5d (protein phosphatase 2, regulatory subunit B', delta) - Rat Genome Database

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Gene: Ppp2r5d (protein phosphatase 2, regulatory subunit B', delta) Rattus norvegicus
Analyze
Symbol: Ppp2r5d
Name: protein phosphatase 2, regulatory subunit B', delta
RGD ID: 1306666
Description: Predicted to enable phosphoprotein phosphatase activity and protein phosphatase activator activity. Involved in negative regulation of peptidyl-threonine phosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta); PARTICIPATES IN dopamine signaling pathway; interleukin-2 signaling pathway; mRNA decay pathway; INTERACTS WITH 2,6-dinitrotoluene; aconitine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100909464; LOC363193; protein phosphatase 2, regulatory subunit B (B56), delta isoform; protein phosphatase 2, regulatory subunit B', delta isoform; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform; serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,767,963 - 21,797,997 (+)NCBIGRCr8
mRatBN7.2914,270,364 - 14,300,396 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,580,995 - 16,610,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,487,588 - 15,516,365 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,054,005 - 10,078,501 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,052,322 - 10,075,842 (-)NCBI
Celera912,018,838 - 12,048,685 (+)NCBICelera
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Protein kinase A activates protein phosphatase 2A by phosphorylation of the B56delta subunit. Ahn JH, etal., Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2979-84. doi: 10.1073/pnas.0611532104. Epub 2007 Feb 14.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mice lacking phosphatase PP2A subunit PR61/B'delta (Ppp2r5d) develop spatially restricted tauopathy by deregulation of CDK5 and GSK3beta. Louis JV, etal., Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):6957-62. doi: 10.1073/pnas.1018777108. Epub 2011 Apr 11.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. GOA pipeline RGD automated data pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13. DARPP-32, Jack of All Trades... Master of Which? Yger M and Girault JA, Front Behav Neurosci. 2011 Sep 8;5:56. doi: 10.3389/fnbeh.2011.00056. eCollection 2011.
Additional References at PubMed
PMID:18496528   PMID:19029245   PMID:24157919   PMID:29294329  


Genomics

Comparative Map Data
Ppp2r5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8921,767,963 - 21,797,997 (+)NCBIGRCr8
mRatBN7.2914,270,364 - 14,300,396 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0916,580,995 - 16,610,425 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0915,487,588 - 15,516,365 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4910,054,005 - 10,078,501 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1910,052,322 - 10,075,842 (-)NCBI
Celera912,018,838 - 12,048,685 (+)NCBICelera
Cytogenetic Map9q12NCBI
PPP2R5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38642,984,570 - 43,012,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl642,984,553 - 43,012,342 (+)EnsemblGRCh38hg38GRCh38
GRCh37642,952,308 - 42,980,080 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36643,060,308 - 43,088,058 (+)NCBINCBI36Build 36hg18NCBI36
Build 34643,060,307 - 43,088,056NCBI
Celera644,504,572 - 44,532,321 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef642,669,485 - 42,697,406 (+)NCBIHuRef
CHM1_1642,954,714 - 42,982,536 (+)NCBICHM1_1
T2T-CHM13v2.0642,813,692 - 42,841,440 (+)NCBIT2T-CHM13v2.0
Ppp2r5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391746,993,917 - 47,015,952 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1746,993,917 - 47,016,037 (-)EnsemblGRCm39 Ensembl
GRCm381746,682,991 - 46,705,026 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1746,682,991 - 46,705,111 (-)EnsemblGRCm38mm10GRCm38
MGSCv371746,819,940 - 46,841,951 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361746,146,183 - 46,168,138 (-)NCBIMGSCv36mm8
Celera1750,118,859 - 50,140,684 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1722.9NCBI
Ppp2r5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,968,565 - 8,986,654 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,968,517 - 8,987,680 (+)NCBIChiLan1.0ChiLan1.0
PPP2R5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2557,484,522 - 57,512,462 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1653,354,769 - 53,382,702 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0642,576,759 - 42,604,609 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1643,871,939 - 43,899,183 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl643,871,915 - 43,899,183 (+)Ensemblpanpan1.1panPan2
PPP2R5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11211,519,194 - 11,540,658 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1211,519,092 - 11,540,109 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1211,546,203 - 11,567,685 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01212,000,391 - 12,022,031 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1212,000,402 - 12,022,025 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11211,528,808 - 11,550,658 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01211,613,067 - 11,634,732 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01211,707,145 - 11,728,788 (+)NCBIUU_Cfam_GSD_1.0
Ppp2r5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494647,015,621 - 47,037,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647616,923,254 - 16,941,430 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647616,922,204 - 16,945,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP2R5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl738,055,753 - 38,079,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1738,055,589 - 38,078,429 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2743,503,956 - 43,526,797 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP2R5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11729,147,560 - 29,175,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1729,145,918 - 29,174,997 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604443,047,236 - 43,075,295 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp2r5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475416,487,712 - 16,507,430 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475416,487,275 - 16,507,539 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp2r5d
270 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:275
Count of miRNA genes:161
Interacting mature miRNAs:197
Transcripts:ENSRNOT00000022862
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)91353377042791750Rat

Markers in Region
UniSTS:143850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,349 - 14,300,580 (+)MAPPERmRatBN7.2
mRatBN7.21339,620,792 - 39,620,946 (+)MAPPERmRatBN7.2
Rnor_6.01344,837,513 - 44,837,666NCBIRnor6.0
Rnor_6.0916,610,379 - 16,610,609NCBIRnor6.0
Rnor_5.01349,922,685 - 49,922,838UniSTSRnor5.0
Rnor_5.0915,516,994 - 15,517,224UniSTSRnor5.0
RGSC_v3.41340,828,931 - 40,829,084UniSTSRGSC3.4
RGSC_v3.4910,053,825 - 10,054,055UniSTSRGSC3.4
Celera912,048,639 - 12,048,870UniSTS
Celera1339,994,958 - 39,995,111UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map13q12UniSTS
RH127839  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,319 - 14,300,530 (+)MAPPERmRatBN7.2
mRatBN7.21092,232,586 - 92,232,928 (+)MAPPERmRatBN7.2
Rnor_6.01095,502,312 - 95,502,653NCBIRnor6.0
Rnor_6.0916,610,349 - 16,610,559NCBIRnor6.0
Rnor_5.01095,237,195 - 95,237,536UniSTSRnor5.0
Rnor_5.0915,516,964 - 15,517,174UniSTSRnor5.0
RGSC_v3.41096,661,306 - 96,661,647UniSTSRGSC3.4
RGSC_v3.4910,053,875 - 10,054,085UniSTSRGSC3.4
Celera912,048,609 - 12,048,820UniSTS
Celera1090,898,167 - 90,898,508UniSTS
RH 3.4 Map953.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map10q32.1UniSTS
RH129717  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,300,100 - 14,300,315 (+)MAPPERmRatBN7.2
Rnor_6.0916,610,130 - 16,610,344NCBIRnor6.0
Rnor_5.0915,516,745 - 15,516,959UniSTSRnor5.0
RGSC_v3.4910,054,090 - 10,054,304UniSTSRGSC3.4
Celera912,048,390 - 12,048,604UniSTS
RH 3.4 Map955.0UniSTS
Cytogenetic Map9q12UniSTS
RH144000  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2914,295,417 - 14,295,744 (-)MAPPERmRatBN7.2
mRatBN7.2914,295,417 - 14,295,744 (+)MAPPERmRatBN7.2
Rnor_6.09605,596 - 605,922NCBIRnor6.0
Rnor_6.0916,605,447 - 16,605,773NCBIRnor6.0
Rnor_5.09589,873 - 590,199UniSTSRnor5.0
Rnor_5.0915,512,062 - 15,512,388UniSTSRnor5.0
RGSC_v3.4910,058,661 - 10,058,987UniSTSRGSC3.4
Celera912,043,707 - 12,044,033UniSTS
Cytogenetic Map9q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 49 33 16 33 2 5 74 31 41 11 2
Low 7 8 8 3 8 6 6 4 6
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000022862   ⟹   ENSRNOP00000022862
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,276,176 - 14,300,336 (+)Ensembl
Rnor_6.0 Ensembl916,586,803 - 16,609,631 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108773   ⟹   ENSRNOP00000086619
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl914,268,745 - 14,300,400 (+)Ensembl
RefSeq Acc Id: NM_001427099   ⟹   NP_001414028
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,773,753 - 21,797,997 (+)NCBI
RefSeq Acc Id: XM_001062510   ⟹   XP_001062510
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,968 - 21,797,997 (+)NCBI
mRatBN7.2914,270,371 - 14,300,396 (+)NCBI
Rnor_6.0916,581,003 - 16,610,425 (+)NCBI
Rnor_5.0915,487,588 - 15,516,365 (+)NCBI
RGSC_v3.4910,054,005 - 10,078,501 (-)RGD
Sequence:
RefSeq Acc Id: XM_006244570   ⟹   XP_006244632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,976 - 21,797,997 (+)NCBI
mRatBN7.2914,270,375 - 14,300,396 (+)NCBI
Rnor_6.0916,581,003 - 16,610,425 (+)NCBI
Rnor_5.0915,487,588 - 15,516,365 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596731   ⟹   XP_017452220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,967 - 21,797,997 (+)NCBI
mRatBN7.2914,270,364 - 14,300,396 (+)NCBI
Rnor_6.0916,580,995 - 16,610,425 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063267359   ⟹   XP_063123429
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8921,767,963 - 21,797,997 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_001062510   ⟸   XM_001062510
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A6K6 (UniProtKB/TrEMBL),   Q499R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244632   ⟸   XM_006244570
- Peptide Label: isoform X1
- UniProtKB: Q499R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017452220   ⟸   XM_017596731
- Peptide Label: isoform X1
- UniProtKB: Q499R1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000022862   ⟸   ENSRNOT00000022862
RefSeq Acc Id: ENSRNOP00000086619   ⟸   ENSRNOT00000108773
RefSeq Acc Id: XP_063123429   ⟸   XM_063267359
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414028   ⟸   NM_001427099
- UniProtKB: F1MAA3 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1MAA3-F1-model_v2 AlphaFold F1MAA3 1-595 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696512
Promoter ID:EPDNEW_R7032
Type:initiation region
Name:Ppp2r5d_1
Description:protein phosphatase 2, regulatory subunit B', delta
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0916,586,796 - 16,586,856EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306666 AgrOrtholog
BioCyc Gene G2FUF-28240 BioCyc
Ensembl Genes ENSRNOG00000016849 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022862.7 UniProtKB/TrEMBL
  ENSRNOT00000108773.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7936565 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  PP2A_B56 UniProtKB/TrEMBL
KEGG Report rno:363193 UniProtKB/TrEMBL
MGC_CLONE MGC:124849 IMAGE-MGC_LOAD
NCBI Gene 363193 ENTREZGENE
PANTHER B56 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE 2A 56 KDA REGULATORY SUBUNIT DELTA ISOFORM UniProtKB/TrEMBL
Pfam B56 UniProtKB/TrEMBL
PhenoGen Ppp2r5d PhenoGen
PIRSF PP2A_B56 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016849 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6A6K6 ENTREZGENE, UniProtKB/TrEMBL
  F1MAA3 ENTREZGENE, UniProtKB/TrEMBL
  Q499R1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta  LOC100909464  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like  Data merged from RGD:6503701 737654 PROVISIONAL
2012-07-05 LOC100909464  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2011-08-02 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta  Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-12-15 Ppp2r5d  protein phosphatase 2, regulatory subunit B', delta isoform  Ppp2r5d  protein phosphatase 2, regulatory subunit B (B56), delta isoform  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Ppp2r5d  protein phosphatase 2, regulatory subunit B (B56), delta isoform  Ppp2r5d_predicted  protein phosphatase 2, regulatory subunit B (B56), delta isoform (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Ppp2r5d_predicted  protein phosphatase 2, regulatory subunit B (B56), delta isoform (predicted)      Symbol and Name status set to approved 70820 APPROVED