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Gene: Carmil1 (capping protein regulator and myosin 1 linker 1) Rattus norvegicus

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Symbol:

Carmil1

Name:

capping protein regulator and myosin 1 linker 1

RGD ID:

1306623

Description:

Predicted to be involved in several processes, including actin filament network formation; plasma membrane bounded cell projection organization; and regulation of actin filament organization. Predicted to be located in cell leading edge and macropinosome. Predicted to be part of filamentous actin. Predicted to be active in lamellipodium and plasma membrane. Orthologous to human CARMIL1 (capping protein regulator and myosin 1 linker 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

F-actin-uncapping protein LRRC16A; leucine rich repeat containing 16; leucine rich repeat containing 16A; leucine-rich repeat-containing protein 16A; LOC306941; Lrrc16; Lrrc16a

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,235,819 - 41,516,204 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	41,236,229 - 41,516,221 (+)	Ensembl				GRCr8
mRatBN7.2	17	40,807,921 - 41,088,326 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	40,808,389 - 41,088,326 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	40,876,765 - 41,155,794 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,480,814 - 42,759,841 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	40,764,512 - 41,044,161 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,050,282 - 43,339,403 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,050,789 - 43,339,403 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	44,916,362 - 45,196,987 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	47,923,987 - 48,206,590 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	40,440,272 - 40,720,033 (+)	NCBI		Celera
RGSC_v3.1	17	47,915,609 - 48,164,927 (+)	NCBI
Cytogenetic Map	17	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

sensorineural hearing loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

2-methoxyethanol (EXP)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

caffeine (ISO)

calcitriol (ISO)

captan (ISO)

chloroprene (ISO)

chromium(6+) (ISO)

chrysene (ISO)

ciguatoxin CTX1B (ISO)

clothianidin (ISO)

cobalt dichloride (EXP)

coumarin (ISO)

crocidolite asbestos (ISO)

cytarabine (ISO)

decabromodiphenyl ether (EXP)

deguelin (ISO)

dichloroacetic acid (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

Erionite (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folpet (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

inulin (ISO)

isoprenaline (ISO)

ivermectin (ISO)

ketoconazole (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N(4)-hydroxycytidine (ISO)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetrachloroethene (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Triptolide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament network formation (IEA,ISO)

barbed-end actin filament uncapping (IEA,ISO)

cell migration (IBA,IEA,ISO)

lamellipodium assembly (IEA,ISO)

macropinocytosis (IEA,ISO)

negative regulation of barbed-end actin filament capping (IEA,ISO)

positive regulation of actin filament polymerization (IEA,ISO)

positive regulation of cell migration (IEA,ISO)

positive regulation of lamellipodium organization (IEA,ISO)

positive regulation of stress fiber assembly (IEA,ISO)

positive regulation of substrate adhesion-dependent cell spreading (IEA,ISO)

regulation of Arp2/3 complex-mediated actin nucleation (IBA)

ruffle organization (IEA,ISO)

urate metabolic process (IEA,ISO)

Cellular Component

cell leading edge (IEA,ISO)

cytoplasm (IEA)

cytosol (IEA,ISO)

filamentous actin (IEA,ISO)

lamellipodium (IBA,IEA,ISO)

macropinosome (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

Molecular Function

protein binding (ISO)

protein-containing complex binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16054028	PMID:19199708	PMID:19503597	PMID:19846667	PMID:24318514	PMID:26578515

Genomics

Comparative Map Data

Carmil1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	41,235,819 - 41,516,204 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	17	41,236,229 - 41,516,221 (+)	Ensembl				GRCr8
mRatBN7.2	17	40,807,921 - 41,088,326 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	40,808,389 - 41,088,326 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	17	40,876,765 - 41,155,794 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	42,480,814 - 42,759,841 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	40,764,512 - 41,044,161 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	43,050,282 - 43,339,403 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	43,050,789 - 43,339,403 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	17	44,916,362 - 45,196,987 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	17	47,923,987 - 48,206,590 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	17	40,440,272 - 40,720,033 (+)	NCBI		Celera
RGSC_v3.1	17	47,915,609 - 48,164,927 (+)	NCBI
Cytogenetic Map	17	p11	NCBI

CARMIL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	25,279,374 - 25,620,530 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	25,279,078 - 25,620,537 (+)	Ensembl			hg38	GRCh38
GRCh37	6	25,279,602 - 25,620,758 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	25,387,627 - 25,728,737 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	25,618,947 - 25,728,735	NCBI
Celera	6	26,506,841 - 26,847,962 (+)	NCBI		Celera
Cytogenetic Map	6	p22.2	NCBI
HuRef	6	25,222,808 - 25,563,750 (+)	NCBI		HuRef
CHM1_1	6	25,281,915 - 25,622,956 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	25,145,130 - 25,486,328 (+)	NCBI		T2T-CHM13v2.0

Carmil1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	24,196,464 - 24,464,983 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	24,196,327 - 24,464,778 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	13	24,012,481 - 24,280,802 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	24,012,344 - 24,280,795 (-)	Ensembl			mm10	GRCm38
MGSCv37	13	24,104,353 - 24,372,659 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	13	24,020,124 - 24,288,260 (-)	NCBI		MGSCv36	mm8
Celera	13	24,244,108 - 24,511,349 (-)	NCBI		Celera
Cytogenetic Map	13	A3.1	NCBI
cM Map	13	10.05	NCBI

Carmil1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955483	1,463,805 - 1,770,520 (-)	Ensembl
ChiLan1.0	NW_004955483	1,463,856 - 1,770,798 (-)	NCBI	ChiLan1.0	ChiLan1.0

CARMIL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	39,926,637 - 40,267,413 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	35,928,268 - 36,268,764 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	25,114,221 - 25,454,984 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	25,440,972 - 25,781,027 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	25,441,682 - 25,780,092 (+)	Ensembl			panPan2	panpan1.1

CARMIL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	23,268,438 - 23,581,794 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	23,268,723 - 23,581,403 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	23,235,876 - 23,527,314 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	23,385,384 - 23,697,506 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	23,383,399 - 23,697,501 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	23,195,743 - 23,505,905 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	23,244,683 - 23,557,494 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	24,683,032 - 24,995,158 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Carmil1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	1,988,229 - 2,216,964 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936671	1,404,589 - 1,633,328 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936671	1,404,595 - 1,632,916 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CARMIL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	20,036,944 - 20,353,420 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	20,036,430 - 20,353,431 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	21,336,649 - 21,653,380 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CARMIL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	46,637,416 - 46,979,061 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	46,635,199 - 46,978,932 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	25,210,038 - 25,552,979 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Carmil1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	1,446,200 - 1,751,211 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624756	1,446,633 - 1,751,043 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Carmil1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	14	43,024,816 - 43,304,556 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Carmil1
1247 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	132
Count of miRNA genes:	90
Interacting mature miRNAs:	116
Transcripts:	ENSRNOT00000059510
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
8552966	Pigfal18	Plasma insulin-like growth factor 1 level QTL 18	8.7		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	12860942	57860942	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2120843	42054133	Rat
2302377	Scl61	Serum cholesterol level QTL 61	4.36		blood HDL cholesterol amount (VT:0000184)	serum high density lipoprotein cholesterol level (CMO:0000361)	17	6221998	58177198	Rat
1354654	Spl7	Serum phospholipid level QTL 7	5.5		blood phospholipid amount (VT:0006084)	blood phospholipid level (CMO:0001169)	17	38031354	83031354	Rat
70157	Niddm32	Non-insulin dependent diabetes mellitus QTL 32	4.34		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	22660799	55604694	Rat
9589151	Insul30	Insulin level QTL 30	8.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	12860942	57860942	Rat
1598871	Memor5	Memory QTL 5	5.3		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	17	40968017	89341781	Rat
1354628	Stl13	Serum triglyceride level QTL 13	3.8		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	21498994	50592236	Rat
1354629	Scl31	Serum cholesterol level QTL 31	4.1		blood cholesterol amount (VT:0000180)	blood total cholesterol level (CMO:0000051)	17	38031354	83031354	Rat
1600398	Edcs5	Endometrial carcinoma susceptibility QTL 5	2.2		uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	17	35446949	75762341	Rat
9590154	Scort9	Serum corticosterone level QTL 9	23.57	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	12860942	57860942	Rat
1559055	Bp278	Blood pressure QTL 278		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
152025238	Slep14	Serum leptin concentration QTL 14	4.62		blood leptin amount (VT:0005667)		17	24390595	84432719	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	38031354	83031354	Rat
1354635	Bp245	Blood pressure QTL 245	6		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	38031354	83031354	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15537025	60531414	Rat
7411666	Foco31	Food consumption QTL 31	11.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	17	12860942	57860942	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4733534	49733534	Rat
4889955	Bss93	Bone structure and strength QTL 93	4.4		tibia size trait (VT:0100001)	tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)	17	27233445	65155015	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	43999106	Rat
1300129	Rf25	Renal function QTL 25	3.03		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	17	41062352	86062352	Rat
152023740	Bp406	Blood pressure QTL 406	6.06		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
1354663	Bvd5	Brain ventricular dilatation QTL 5	3.51	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	17	32199534	86201342	Rat
7488966	Bp370	Blood pressure QTL 370		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	23858926	68858926	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	43999106	Rat
152023737	Bp405	Blood pressure QTL 405	5.06		arterial blood pressure trait (VT:2000000)			24136127	84432719	Rat
152023736	Bp404	Blood pressure QTL 404	3.78		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
724528	Uae4	Urinary albumin excretion QTL 4	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	17	36045537	81045537	Rat
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	43999106	Rat
70210	Cm15	Cardiac mass QTL 15	6.5		heart right ventricle mass (VT:0007033)	heart right ventricle wet weight (CMO:0000072)	17	30066472	75066472	Rat
152023626	Bp403	Blood pressure QTL 403	3.86		arterial blood pressure trait (VT:2000000)		17	24136127	84432719	Rat
9590107	Sffal7	Serum free fatty acids level QTL 7	4.81	0.001	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	17	33104645	78104645	Rat
724549	Niddm56	Non-insulin dependent diabetes mellitus QTL 56		0.03	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	17	32199534	49497050	Rat
1581512	Cm55	Cardiac mass QTL 55	2.8	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	27233445	83975845	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4733534	49733534	Rat
61394	Bp8	Blood pressure QTL 8	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	23286322	64246472	Rat
9589057	Scfw6	Subcutaneous fat weight QTL 6	8.62	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	17	12860942	57860942	Rat
2317045	Aia11	Adjuvant induced arthritis QTL 11	4.06		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	17	26522051	71522051	Rat
10450503	Bp386	Blood pressure QTL 386		0.28	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	22019705	67019705	Rat
9590088	Insglur7	Insulin/glucose ratio QTL 7	20.38	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	17	12860942	57860942	Rat
2313854	Bp343	Blood pressure QTL 343	3.9		life span trait (VT:0005372)	age at time of death (CMO:0001193)	17	32199534	55604694	Rat
2317053	Aia25	Adjuvant induced arthritis QTL 25	2.69		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	17	10604694	55604694	Rat
8552928	Pigfal9	Plasma insulin-like growth factor 1 level QTL 9	9		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	17	33104645	78104645	Rat
12903980	Cm120	Cardiac mass QTL 120		0.002	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	17	23858926	68858926	Rat
12903981	Am17	Aortic mass QTL 17		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	17	23858926	68858926	Rat
4889891	Eae32	Experimental allergic encephalomyelitis QTL 32	4.8	0.0002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	17	27233445	72233445	Rat
12903982	Kidm70	Kidney mass QTL 70		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	17	23858926	68858926	Rat
12903978	Cm118	Cardiac mass QTL 118		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	17	23858926	68858926	Rat
12903979	Cm119	Cardiac mass QTL 119		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	17	23858926	68858926	Rat
1354619	Bp242	Blood pressure QTL 242	6.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	37687877	82687877	Rat

Markers in Region

D17Got117

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	41,001,846 - 41,001,939 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	43,248,758 - 43,248,850	NCBI	Rnor6.0
Rnor_5.0	17	45,109,902 - 45,109,994	UniSTS	Rnor5.0
RGSC_v3.4	17	48,120,004 - 48,120,096	UniSTS	RGSC3.4
Celera	17	40,633,499 - 40,633,591	UniSTS
Cytogenetic Map	17	p11	UniSTS

AI425970

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	41,087,976 - 41,088,068 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	43,339,054 - 43,339,145	NCBI	Rnor6.0
Rnor_5.0	17	45,196,638 - 45,196,729	UniSTS	Rnor5.0
RGSC_v3.4	17	48,206,241 - 48,206,332	UniSTS	RGSC3.4
Celera	17	40,719,684 - 40,719,775	UniSTS
Cytogenetic Map	17	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001440257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039095698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276423	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276425	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276430	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059510 ⟹ ENSRNOP00000056268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,353,499 - 41,516,204 (+)	Ensembl
mRatBN7.2 Ensembl	17	40,925,607 - 41,088,326 (+)	Ensembl
Rnor_6.0 Ensembl	17	43,050,961 - 43,339,403 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080745 ⟹ ENSRNOP00000070264

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,229 - 41,516,204 (+)	Ensembl
mRatBN7.2 Ensembl	17	40,808,389 - 41,088,326 (+)	Ensembl
Rnor_6.0 Ensembl	17	43,050,789 - 43,339,402 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000104932 ⟹ ENSRNOP00000095539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,265 - 41,516,202 (+)	Ensembl
mRatBN7.2 Ensembl	17	40,808,389 - 41,087,952 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108358 ⟹ ENSRNOP00000085444

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,265 - 41,516,202 (+)	Ensembl
mRatBN7.2 Ensembl	17	40,808,389 - 41,087,952 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000117749 ⟹ ENSRNOP00000081294

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,265 - 41,516,221 (+)	Ensembl
mRatBN7.2 Ensembl	17	40,808,389 - 41,087,952 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000121246 ⟹ ENSRNOP00000099065

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,265 - 41,508,709 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164795 ⟹ ENSRNOP00000102732

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	17	41,236,265 - 41,508,709 (+)	Ensembl

RefSeq Acc Id:

NM_001191692 ⟹ NP_001178621

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,236,464 - 41,516,204 (+)	NCBI
mRatBN7.2	17	40,808,575 - 41,088,326 (+)	NCBI
Rnor_6.0	17	43,050,961 - 43,339,403 (+)	NCBI
Rnor_5.0	17	44,916,362 - 45,196,987 (+)	NCBI
Celera	17	40,440,272 - 40,720,033 (+)	NCBI

Sequence:

show sequence

ATGACCGACGAGAGCTCCGATGTCCCCCGGGAGTTAATGGAAAGCATCAAGGATGTTATTGGCA
GAAAGATCAAAATCTCGGTGAAGAAGAAAGTGAAGTTGGAAGTGAAGGGTGACAGAGTGGAGAA
CAAAGTGCTGGTGCTCACATCATGCCGAGCTTTCCTCCTGTCAGCACGCATCCCCACCAAGCTC
GAGTTAACCTTCAGCTATCTAGAGATTCATGGAGTCATCTGCCACAAACCTACTCAGATGGTTG
TGGAAACTGAGAAGTGTAACGTGTCCATGAAGATGGCGTCACTGGAGGATGCGAGTGATGTGCT
GGCTCACATAGGCACCTGCTTACGGAGGATATTTCCGGGCCTTTCCCCACTGAGAATCATGAAG
AAAGTCTCCATGGAGCCATCTGAGCGCCTGGCCAGTCTCCAGGCCCTGTGGGACAGCCAGACCT
TGGCTGAGCCAGGCCCCTGTGGTGGGTTTTCTCAGATGTATGCCTGTGTATGCGACTGGCTGGG
ATTTTCGTACAGGGAAGAAGTGCAGTGGGATGTGGATACAATTTATCTGACACAAGATACCAGG
GAATTAAATTTACAAGACTTCAGTCATCTCGAGCACAGAGACCTGATTCCCATCATCGCTGCCC
TGGAATATAACCAATGGTTCACCAAACTGTCCTCCAAGGATCTCAAGCTGTCCACGGATGTCTG
TGAACAGATCTTGAGGGTGGTGAGTAGGTCCAATCTACTGGAAGAGTTGGTGTTGGAAAATGCT
GGACTCAGAACAGATTTTGCACAGAAATTGGCCAGTGCTCTAGCACACAATCCTAACTCAGGAC
TTCACACAATCAACCTTGCTGGGAACCCGCTGGAGGATCGAGGCGTGTCCTCCTTAAGTATTCA
ATTTGCCAAACTCCCAAAGGGATTGAAGCATTTGAACCTGTCTAAAACCTCATTGTCACCTAAA
GGGGTGAATAGCCTTTGTCAGTCCCTCAGTGCCAACCCTCTGACTGCCTCTACCCTCACCCACC
TGGACCTCTCAGGGAATGTCCTCCGAGGAGATGACCTCTCACACATGTACAATTTTTTGGCCCA
GCCCAACACCATTGTTCATCTGGATCTGTCTAATACTGAATGTTCTCTGGAGATGGTGTGTAGT
GCTCTCCTCCGGGGATGCCTTCAGTGTCTGGCCGTGCTCAATCTCTCCAGGTCTGTCTTCTCTC
ACAGGAAAGGAAAGGAAGTCCCTCCGTCTTTCAAGCAGTTTTTCAGCAGTTCTCTGGCTTTGAT
CCAAATCAATCTTTCAGGCACAAAACTGTCTCCCGAGCCCTTGAAGGCATTGCTCCTGGGCCTG
GCCTGCAATCATAGTTTGAAGGGAGTCTCTCTGGATCTCAGCAATTGTGAGCTTGGCCACTGTC
TGAGGTCCGGAGGAGCTCAAGTGTTAGAAGGCTGTATCGCTGAAATCCACAACATCACCAGCTT
AGATATCTCTGACAACGGTTTAGAATCTGACCTATCTACCCTGATTGTGTGGCTCAGTAGAAAC
AGATCAATACAGCACCTGGCGTTAGGCAAAAATTTTAACAATATGAAATCCAAAAATCTGACGC
CTGTGTTGGACAACTTAGTGCAGATGATCCAAGATGAAGACTCTCCTCTGCAGTCCTTGTCCCT
GGCTGACTCAAAACTCAAGACTGAAGTCACCATCATCATCAATGCCTTGGGCAGCAACACCTCC
CTGACCAAAGTGGACATCAGTGGGAATAGCATGGGGGACATGGGAGCGAAGATGCTGGCTAAGG
CTCTACAGATCAACACCAAACTCAGGACAGTCATCTGGGACAAAAACAACATTACTGCACAAGG
CTTCCAAGACATAGCCGTTGCTATGGAAAAGAACTACACACTGAGATTTATGCCAATTCCAATG
TATGATGCTTCTCAAGCTCTTAAAACAAGCCCTGAGAAGACAGAAGAGGCTCTGCAGAAGATAG
AAAATTATCTGCTCCGGAATCACGAGACCAGGAAATACCTTCAGGAGCAGGCCTACCGCCTCCA
GCAAGGCATTGTCACCAGCACCACCCAGCAGATGATTGACCGGATATGTGTGAAGGTTCAGGAT
CACCTCAACTCCTTACGAGCCTGTGGGGGGGATGCTATTCAGGAGGATTTAAAGGCAGCAGAGC
GGCTCATGCGAGATGCTAAGAATTCTAAAACGTTGTTACCAAATTTATACCATGTGGGCGGAGC
ATCATGGGCAGGAGCCAGTGGGCTGTCATCCAGTCCCATTCAGGAGATCCTGGAGTCAATGGCC
GGAGAAGTCACAAGAGTTGTGGATGAACAACTGAAGGGTTTGCTAGAATCTATGGTGGATGCGG
CCGAGAACCTCTGCCCCAATGTCATGAGAAAAGCCCACATCCGACAAGACCTGATCCACGCCAG
CACCGAAAAGATTTCCATTCCACGAACCTTTGTTAAAAATGTCCTGTTGGAACAGTCTGGAATT
GACATTCTTAACAAAATTAGTGAGGTGAAGCTGACAGTGGCCTCGTTCTTGTCTGACCGAATCG
TAGATGAGATCCTGGATTCTCTCTCCAACAGCCATCGGAAGCTGGCCAACCATTTCAGCAGGCT
AAGCAAGAGCCTTCCCCAGCGAGAGGACCTAGAGGTGGAGCTGGTGGAGGAAAAGCCGGTGAAA
CGGGCCATACTTACGGTTGAGGATCTCACTGAGGTGGAGAAGCTGGAAGACCTAGACACTTGTA
TGATGACTCCTAAGTCCAAGAGGAAGAGCATCCACAGCCGAATGCTGCGGCCTGTCTCCAGGGC
CTTTGAAATGGAGTTTGATCTTGATAAAGCCCTGGAAGAGGTGCCGATTCACATCGAAGACCCG
CCTTTCCCATCAGTCCGGCAGGAGAAGCGAAGCTCGGGCTTGATCTCTGAGCTGCCCTCAGAGG
AAGGCAGGAGACTGGAACACTTCACCAAGTTAAGGCCCAAGAGGAACAAGAAGCAGCAACCTAC
ACAAGCAGCGGTCTGTAGCATCAACATCATCCCCCATGATGGAGAACAGAATGGCCTCATGGGC
AGAGTGGATGAAGGTGTAGATGAATTTTTCACCAAGAAGGTGACTAAAATGGATTGCAAGAGGT
CATCCACGCGCTGTTCAGATACCCACGACCTCGTAGAAGGAGATGAGAAGAAAAAACGGGATTC
TCGGAGAAGTGGCTTTCTCAACCTAATTAAATCCAGGTCCAGATCTGAGCGGCCGCCCACGGTC
CTGATGACAGAAGAGCTCTCCTCCCCGAAAGGGGCAGTCCGGAGCCCACCAGTGGATACCGCCA
GGAAGGAGATAAAGGCAGCTGAGCACAATGGTGCTCCAGAACGCACAGAGGAGATGAGGACACC
GGAGCCCCTGGAGGAGGGTCTAGCAGAGGAAGCTGGCAGGGCTGAGCGCAGTGACAGCAGGGGC
AGCCCACAGGGTGGCCGGCGCTATGTGCAGGTGATGGGCAGCGGGCTGCTGGCGGAGATGAAGG
CTAAACAGGAGCGGAGAGCAGCATGTGCGCAGAAGAAGCTTGGCAACGATGTCATCTCCCAGGA
TCCCTCCAGCCCAGTCATGAGCAACACAGAGCGATTAGATGGAGGGGCAACAGTGCCTAAACTG
CAACCAGGTCTTCCAGAGGCCCGCTTTGGTTTGGGAACACCAGAAAAGAATGCCAAAGCTGAAC
CCAGGGTGGATGGAGGCTGCAGGTCCCGAAACTCCTCCAGCATGCCCACCAGCCCGAAGCCCCT
CCTTCAGTCCCCTAAGCCCAGCCCTGCAGCCCGGCCGTCTATCCCTCAGAAGCCAAGAACTGCC
TCCAAACCTGAAGATACCCCAGACTCTCCATCTGGTCCTAGTTCCCCTAAAGTTGCCCTTCTTC
CACCCATCCTCAAAAAAGTCTCCTTGGACAAAGAGCGTGATGACCAGAGCAGCTCACAGTCCAG
TCCTAGGACCTTCTCCCAGGAAGTCTCAAGGAGAAGCTGGGGCCCAGCCCAGGAGTATCAAGAA
CAAAAGCAACGGAACTTGGGCAAAGATGGTCACCAGGGGAGCAAATCCAGTGACTCTGGAGAAG
AGGCAGAAAAAGAGTTTATTTTTGTGTAATATAATGGTGCCCACCCCAAGCCTTCCCATGCAAG
GTGCTCTCTGCAGCCCTCAGATGCAGGGTTCTCTCTGCGGCCCTCAGAGCTGGGAGCAGTGCCT
CTTGTCTCTTCTCTTGGTGCTTTCTTCTTTTTCTCCTTTTCTTCTTTTTCTTATACCTCTATAT
TAAAACAAATTTTTGGTCTTCTCCCCTTCTTGGCATTTGATTTCTAAACATTGTTTCTTATGCC
TTCAACAAAAAGCCAGCAATTATTCCATGGGCCCTACTTGAATTTCTCTAAGGCAGCTACACAT
TGCCCTGCACGGTGAGTTGTTTTTGGAAATTAATGAAGTAACTGGACTCACACCCAAGTAACTA
TCCAGGAGATCCTGGAGTGCTACAGGGTGTGTTTGTGTCAGACCCACACATGACTCAATATAGC
AATTTATTCTTGATGTATGCAATTGCACATTGTAATTATATTAACAGCACACTAATAAATAATT
TGTATAAATTATATATATATTAGATCTTGGGCACTGTTCTTAACATTCTTTTGTGGGACATTTC
CTTCCCCATGTAGAATTGTACATTTAAAGCTTGTTTGGTAATATTTGCAGACCATCAGCAAGCA
CAGCTAAGAACAGAGTGTGTGAAGCCCAGATTCATGTATATAGTTGATTGGAATGAGGTCTTAT
GAATATTCATGTTTTTGAAGGCCTTTAATTTCTGTCTGCTTATTAGTTTTTAATGTGTGGTTTT
TAAAAGAAAATGTTGGCACCTGTAAAAAAAAATCTAAATACTACTCTTTATAAATCATCTCACA
AATATTCACTTACATTACAAGCTGAAAGTATTTTATTCATATGTATATTTATACCAATAAAATG
ATTTTACAAGTGGAA

hide sequence

RefSeq Acc Id:

XM_008771642 ⟹ XP_008769864

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,821 - 41,516,204 (+)	NCBI
mRatBN7.2	17	40,807,924 - 41,088,326 (+)	NCBI
Rnor_6.0	17	43,050,283 - 43,339,403 (+)	NCBI

Sequence:

show sequence

CGAGGAGGGGCGCCGAGTCCCGCGCCGCCGCAGCAGTCAGGGCAGCAGCCACCGCAGCGGAGCA
CCGCATCGGTCCCCGGGCTGTGCCCCGCGCCGGGCACGGTGCGCCCAGGCCCGGAGGCCGGCCG
GGGACCCGTGCGGAGGCCGCTCTCGCGAGGCGGGGAGGAGACGCAGGGGGACCAGGAGGAGGAG
CAGGAGAGGGTGAAGGAGAGGAGGAGGAGCGGGAGAAGGGGAAGGAGGAGAGCCGAGCCGGCCC
GCCCCTGCCCAGCCCAGCCCGCAGGAGGCCGAGACCAGCCCGGCGGCCCAGCCCTCGCCTTCCG
CTTCACCTACGCCCAAGGTGCGGCGCAGAGGCCGGGCTGCGCGGCGCCCGCCCCGGGAGAAGCC
AGTGCTGCAGCCGCCTTGCGTTCGGCCCCTGGAGCTGCGAGCCGAGAAGGCGGCATGTAGCTGC
GGCCGCAGAGCCAGCTCGGATTTGCAACTCTTAGGGTTTTTTTTTTTTTTTTTTCTTTTGGTAC
TGAGGGCGCGCGGCAACCTTGGATCAACGCCCCGCTGCTCCGGCCGGCCCACTCTTTCCTTGCA
AGCTGCGGCTTCCTCGCGGAAACATTAACGGGTCTGGGGAAGGGCGCGGGGCCGAGAATCAGAG
AGTGGGACCCGAGATCTCCCCGCGCCCAGTGGGCAACCATGACCGACGAGAGCTCCGATGTCCC
CCGGGAGTTAATGGAAAGCATCAAGGATGTTATTGGCAGAAAGATCAAAATCTCGGTGAAGAAG
AAAGTGAAGTTGGAAGTGAAGGGTGACAGAGTGGAGAACAAAGTGCTGGTGCTCACATCATGCC
GAGCTTTCCTCCTGTCAGCACGCATCCCCACCAAGCTCGAGTTAACCTTCAGCTATCTAGAGAT
TCATGGAGTCATCTGCCACAAACCTACTCAGATGGTTGTGGAAACTGAGAAGTGTAACGTGTCC
ATGAAGATGGCGTCACTGGAGGATGCGAGTGATGTGCTGGCTCACATAGGCACCTGCTTACGGA
GGATATTTCCGGGCCTTTCCCCACTGAGAATCATGAAGAAAGTCTCCATGGAGCCATCTGAGCG
CCTGGCCAGTCTCCAGGCCCTGTGGGACAGCCAGACCTTGGCTGAGCCAGGCCCCTGTGGTGGG
TTTTCTCAGATGTATGCCTGTGTATGCGACTGGCTGGGATTTTCGTACAGGGAAGAAGTGCAGT
GGGATGTGGATACAATTTATCTGACACAAGATACCAGGGAATTAAATTTACAAGACTTCAGTCA
TCTCGAGCACAGAGACCTGATTCCCATCATCGCTGCCCTGGAATATAACCAATGGTTCACCAAA
CTGTCCTCCAAGGATCTCAAGCTGTCCACGGATGTCTGTGAACAGATCTTGAGGGTGGTGAGTA
GGTCCAATCTACTGGAAGAGTTGGTGTTGGAAAATGCTGGACTCAGAACAGATTTTGCACAGAA
ATTGGCCAGTGCTCTAGCACACAATCCTAACTCAGGACTTCACACAATCAACCTTGCTGGGAAC
CCGCTGGAGGATCGAGGCGTGTCCTCCTTAAGTATTCAATTTGCCAAACTCCCAAAGGGATTGA
AGCATTTGAACCTGTCTAAAACCTCATTGTCACCTAAAGGGGTGAATAGCCTTTGTCAGTCCCT
CAGTGCCAACCCTCTGACTGCCTCTACCCTCACCCACCTGGACCTCTCAGGGAATGTCCTCCGA
GGAGATGACCTCTCACACATGTACAATTTTTTGGCCCAGCCCAACACCATTGTTCATCTGGATC
TGTCTAATACTGAATGTTCTCTGGAGATGGTGTGTAGTGCTCTCCTCCGGGGATGCCTTCAGTG
TCTGGCCGTGCTCAATCTCTCCAGGTCTGTCTTCTCTCACAGGAAAGGAAAGGAAGTCCCTCCG
TCTTTCAAGCAGTTTTTCAGCAGTTCTCTGGCTTTGATCCAAATCAATCTTTCAGGCACAAAAC
TGTCTCCCGAGCCCTTGAAGGCATTGCTCCTGGGCCTGGCCTGCAATCATAGTTTGAAGGGAGT
CTCTCTGGATCTCAGCAATTGTGAGCTGAGGTCCGGAGGAGCTCAAGTGTTAGAAGGCTGTATC
GCTGAAATCCACAACATCACCAGCTTAGATATCTCTGACAACGGTTTAGAATCTGACCTATCTA
CCCTGATTGTGTGGCTCAGTAGAAACAGATCAATACAGCACCTGGCGTTAGGCAAAAATTTTAA
CAATATGAAATCCAAAAATCTGACGCCTGTGTTGGACAACTTAGTGCAGATGATCCAAGATGAA
GACTCTCCTCTGCAGTCCTTGTCCCTGGCTGACTCAAAACTCAAGACTGAAGTCACCATCATCA
TCAATGCCTTGGGCAGCAACACCTCCCTGACCAAAGTGGACATCAGTGGGAATAGCATGGGGGA
CATGGGAGCGAAGATGCTGGCTAAGGCTCTACAGATCAACACCAAACTCAGGACAGTCATCTGG
GACAAAAACAACATTACTGCACAAGGCTTCCAAGACATAGCCGTTGCTATGGAAAAGAACTACA
CACTGAGATTTATGCCAATTCCAATGTATGATGCTTCTCAAGCTCTTAAAACAAGCCCTGAGAA
GACAGAAGAGGCTCTGCAGAAGATAGAAAATTATCTGCTCCGGAATCACGAGACCAGGAAATAC
CTTCAGGAGCAGGCCTACCGCCTCCAGCAAGGCATTGTCACCAGCACCACCCAGCAGATGATTG
ACCGGATATGTGTGAAGGTTCAGGATCACCTCAACTCCTTACGAGCCTGTGGGGGGGATGCTAT
TCAGGAGGATTTAAAGGCAGCAGAGCGGCTCATGCGAGATGCTAAGAATTCTAAAACGTTGTTA
CCAAATTTATACCATGTGGGCGGAGCATCATGGGCAGGAGCCAGTGGGCTGTCATCCAGTCCCA
TTCAGGAGATCCTGGAGTCAATGGCCGGAGAAGTCACAAGAGTTGTGGATGAACAACTGAAGGG
TTTGCTAGAATCTATGGTGGATGCGGCCGAGAACCTCTGCCCCAATGTCATGAGAAAAGCCCAC
ATCCGACAAGACCTGATCCACGCCAGCACCGAAAAGATTTCCATTCCACGAACCTTTGTTAAAA
ATGTCCTGTTGGAACAGTCTGGAATTGACATTCTTAACAAAATTAGTGAGGTGAAGCTGACAGT
GGCCTCGTTCTTGTCTGACCGAATCGTAGATGAGATCCTGGATTCTCTCTCCAACAGCCATCGG
AAGCTGGCCAACCATTTCAGCAGGCTAAGCAAGAGCCTTCCCCAGCGAGAGGACCTAGAGGTGG
AGCTGGTGGAGGAAAAGCCGGTGAAACGGGCCATACTTACGGTTGAGGATCTCACTGAGGTGGA
GAAGCTGGAAGACCTAGACACTTGTATGACTCTCTGCTGTACAAGTATGACTCCTAAGTCCAAG
AGGAAGAGCATCCACAGCCGAATGCTGCGGCCTGTCTCCAGGGCCTTTGAAATGGAGTTTGATC
TTGATAAAGCCCTGGAAGAGGTGCCGATTCACATCGAAGACCCGCCTTTCCCATCAGTCCGGCA
GGAGAAGCGAAGCTCGGGCTTGATCTCTGAGCTGCCCTCAGAGGAAGGCAGGAGACTGGAACAC
TTCACCAAGTTAAGGCCCAAGAGGAACAAGAAGCAGCAACCTACACAAGCAGCGGTCTGTAGCA
TCAACATCATCCCCCATGATGGAGAACAGAATGGCCTCATGGGCAGAGTGGATGAAGGTGTAGA
TGAATTTTTCACCAAGAAGGTGACTAAAATGGATTGCAAGAGGTCATCCACGCGCTGTTCAGAT
ACCCACGACCTCGTAGAAGGAGATGAGAAGAAAAAACGGGATTCTCGGAGAAGTGGCTTTCTCA
ACCTAATTAAATCCAGGTCCAGATCTGAGCGGCCGCCCACGGTCCTGATGACAGAAGAGCTCTC
CTCCCCGAAAGGGGCAGTCCGGAGCCCACCAGTGGATACCGCCAGGAAGGAGATAAAGGCAGCT
GAGCACAATGGTGCTCCAGAACGCACAGAGGAGATGAGGACACCGGAGCCCCTGGAGGAGGGTC
TAGCAGAGGAAGCTGGCAGGGCTGAGCGCAGTGACAGCAGGGGCAGCCCACAGGGTGGCCGGCG
CTATGTGCAGGTGATGGGCAGCGGGCTGCTGGCGGAGATGAAGGCTAAACAGGAGCGGAGAGCA
GCATGTGCGCAGAAGAAGCTTGGCAACGATGTCATCTCCCAGGATCCCTCCAGCCCAGTCATGA
GCAACACAGAGCGATTAGATGGAGGGGCAACAGTGCCTAAACTGCAACCAGGTCTTCCAGAGGC
CCGCTTTGGTTTGGGAACACCAGAAAAGAATGCCAAAGCTGAACCCAGGGTGGATGGAGGCTGC
AGGTCCCGAAACTCCTCCAGCATGCCCACCAGCCCGAAGCCCCTCCTTCAGTCCCCTAAGCCCA
GCCCTGCAGCCCGGCCGTCTATCCCTCAGAAGCCAAGAACTGCCTCCAAACCTGAAGATACCCC
AGACTCTCCATCTGGTCCTAGTTCCCCTAAAGTTGCCCTTCTTCCACCCATCCTCAAAAAAGTC
TCCTTGGACAAAGAGCGTGATGACCAGAGCAGCTCACAGTCCAGTCCTAGGACCTTCTCCCAGG
AAGTAGTGCAGAGAGGAGATCATTTCAAAAGGCATTCAGATCATGACAAGCCTTCCAGTAGAGG
GAAAAGATCTTCAAAACTCTGCTTCGCCATTGCGGAAGAGGAAGTGAATGCACCTGGGTACAGG
AAGTCACAGCCAACAAATGTCTCAAGGAGAAGCTGGGGCCCAGCCCAGGAGTATCAAGAACAAA
AGCAACGGAACTTGGGCAAAGATGGTCACCAGGGGAGCAAATCCAGTGACTCTGGAGAAGAGGC
AGAAAAAGAGTTTATTTTTGTGTAATATAATGGTGCCCACCCCAAGCCTTCCCATGCAAGGTGC
TCTCTGCAGCCCTCAGATGCAGGGTTCTCTCTGCGGCCCTCAGAGCTGGGAGCAGTGCCTCTTG
TCTCTTCTCTTGGTGCTTTCTTCTTTTTCTCCTTTTCTTCTTTTTCTTATACCTCTATATTAAA
ACAAATTTTTGGTCTTCTCCCCTTCTTGGCATTTGATTTCTAAACATTGTTTCTTATGCCTTCA
ACAAAAAGCCAGCAATTATTCCATGGGCCCTACTTGAATTTCTCTAAGGCAGCTACACATTGCC
CTGCACGGTGAGTTGTTTTTGGAAATTAATGAAGTAACTGGACTCACACCCAAGTAACTATCCA
GGAGATCCTGGAGTGCTACAGGGTGTGTTTGTGTCAGACCCACACATGACTCAATATAGCAATT
TATTCTTGATGTATGCAATTGCACATTGTAATTATATTAACAGCACACTAATAAATAATTTGTA
TAAATTATATATATATTAGATCTTGGGCACTGTTCTTAACATTCTTTTGTGGGACATTTCCTTC
CCCATGTAGAATTGTACATTTAAAGCTTGTTTGGTAATATTTGCAGACCATCAGCAAGCACAGC
TAAGAACAGAGTGTGTGAAGCCCAGATTCATGTATATAGTTGATTGGAATGAGGTCTTATGAAT
ATTCATGTTTTTGAAGGCCTTTAATTTCTGTCTGCTTATTAGTTTTTAATGTGTGGTTTTTAAA
AGAAAATGTTGGCACCTGTAAAAAAAAATCTAAATACTACTCTTTATAAATCATCTCACAAATA
TTCACTTACATTACAAGCTGAAAGTATTTTATTCATATGTATATTTATACCAATAAAATGATTT
TACAAGTGGAA

hide sequence

RefSeq Acc Id:

XM_008771644 ⟹ XP_008769866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,822 - 41,516,204 (+)	NCBI
mRatBN7.2	17	40,807,925 - 41,088,326 (+)	NCBI
Rnor_6.0	17	43,050,283 - 43,339,403 (+)	NCBI

Sequence:

show sequence

CGAGGAGGGGCGCCGAGTCCCGCGCCGCCGCAGCAGTCAGGGCAGCAGCCACCGCAGCGGAGCA
CCGCATCGGTCCCCGGGCTGTGCCCCGCGCCGGGCACGGTGCGCCCAGGCCCGGAGGCCGGCCG
GGGACCCGTGCGGAGGCCGCTCTCGCGAGGCGGGGAGGAGACGCAGGGGGACCAGGAGGAGGAG
CAGGAGAGGGTGAAGGAGAGGAGGAGGAGCGGGAGAAGGGGAAGGAGGAGAGCCGAGCCGGCCC
GCCCCTGCCCAGCCCAGCCCGCAGGAGGCCGAGACCAGCCCGGCGGCCCAGCCCTCGCCTTCCG
CTTCACCTACGCCCAAGGTGCGGCGCAGAGGCCGGGCTGCGCGGCGCCCGCCCCGGGAGAAGCC
AGTGCTGCAGCCGCCTTGCGTTCGGCCCCTGGAGCTGCGAGCCGAGAAGGCGGCATGTAGCTGC
GGCCGCAGAGCCAGCTCGGATTTGCAACTCTTAGGGTTTTTTTTTTTTTTTTTTCTTTTGGTAC
TGAGGGCGCGCGGCAACCTTGGATCAACGCCCCGCTGCTCCGGCCGGCCCACTCTTTCCTTGCA
AGCTGCGGCTTCCTCGCGGAAACATTAACGGGTCTGGGGAAGGGCGCGGGGCCGAGAATCAGAG
AGTGGGACCCGAGATCTCCCCGCGCCCAGTGGGCAACCATGACCGACGAGAGCTCCGATGTCCC
CCGGGAGTTAATGGAAAGCATCAAGGATGTTATTGGCAGAAAGATCAAAATCTCGGTGAAGAAG
AAAGTGAAGTTGGAAGTGAAGGGTGACAGAGTGGAGAACAAAGTGCTGGTGCTCACATCATGCC
GAGCTTTCCTCCTGTCAGCACGCATCCCCACCAAGCTCGAGTTAACCTTCAGCTATCTAGAGAT
TCATGGAGTCATCTGCCACAAACCTACTCAGATGGTTGTGGAAACTGAGAAGTGTAACGTGTCC
ATGAAGATGGCGTCACTGGAGGATGCGAGTGATGTGCTGGCTCACATAGGCACCTGCTTACGGA
GGATATTTCCGGGCCTTTCCCCACTGAGAATCATGAAGAAAGTCTCCATGGAGCCATCTGAGCG
CCTGGCCAGTCTCCAGGCCCTGTGGGACAGCCAGACCTTGGCTGAGCCAGGCCCCTGTGGTGGG
TTTTCTCAGATGTATGCCTGTGTATGCGACTGGCTGGGATTTTCGTACAGGGAAGAAGTGCAGT
GGGATGTGGATACAATTTATCTGACACAAGATACCAGGGAATTAAATTTACAAGACTTCAGTCA
TCTCGAGCACAGAGACCTGATTCCCATCATCGCTGCCCTGGAATATAACCAATGGTTCACCAAA
CTGTCCTCCAAGGATCTCAAGCTGTCCACGGATGTCTGTGAACAGATCTTGAGGGTGGTGAGTA
GGTCCAATCTACTGGAAGAGTTGGTGTTGGAAAATGCTGGACTCAGAACAGATTTTGCACAGAA
ATTGGCCAGTGCTCTAGCACACAATCCTAACTCAGGACTTCACACAATCAACCTTGCTGGGAAC
CCGCTGGAGGATCGAGGCGTGTCCTCCTTAAGTATTCAATTTGCCAAACTCCCAAAGGGATTGA
AGCATTTGAACCTGTCTAAAACCTCATTGTCACCTAAAGGGGTGAATAGCCTTTGTCAGTCCCT
CAGTGCCAACCCTCTGACTGCCTCTACCCTCACCCACCTGGACCTCTCAGGGAATGTCCTCCGA
GGAGATGACCTCTCACACATGTACAATTTTTTGGCCCAGCCCAACACCATTGTTCATCTGGATC
TGTCTAATACTGAATGTTCTCTGGAGATGGTGTGTAGTGCTCTCCTCCGGGGATGCCTTCAGTG
TCTGGCCGTGCTCAATCTCTCCAGGTCTGTCTTCTCTCACAGGAAAGGAAAGGAAGTCCCTCCG
TCTTTCAAGCAGTTTTTCAGCAGTTCTCTGGCTTTGATCCAAATCAATCTTTCAGGCACAAAAC
TGTCTCCCGAGCCCTTGAAGGCATTGCTCCTGGGCCTGGCCTGCAATCATAGTTTGAAGGGAGT
CTCTCTGGATCTCAGCAATTGTGAGCTGAGGTCCGGAGGAGCTCAAGTGTTAGAAGGCTGTATC
GCTGAAATCCACAACATCACCAGCTTAGATATCTCTGACAACGGTTTAGAATCTGACCTATCTA
CCCTGATTGTGTGGCTCAGTAGAAACAGATCAATACAGCACCTGGCGTTAGGCAAAAATTTTAA
CAATATGAAATCCAAAAATCTGACGCCTGTGTTGGACAACTTAGTGCAGATGATCCAAGATGAA
GACTCTCCTCTGCAGTCCTTGTCCCTGGCTGACTCAAAACTCAAGACTGAAGTCACCATCATCA
TCAATGCCTTGGGCAGCAACACCTCCCTGACCAAAGTGGACATCAGTGGGAATAGCATGGGGGA
CATGGGAGCGAAGATGCTGGCTAAGGCTCTACAGATCAACACCAAACTCAGGACAGTCATCTGG
GACAAAAACAACATTACTGCACAAGGCTTCCAAGACATAGCCGTTGCTATGGAAAAGAACTACA
CACTGAGATTTATGCCAATTCCAATGTATGATGCTTCTCAAGCTCTTAAAACAAGCCCTGAGAA
GACAGAAGAGGCTCTGCAGAAGATAGAAAATTATCTGCTCCGGAATCACGAGACCAGGAAATAC
CTTCAGGAGCAGGCCTACCGCCTCCAGCAAGGCATTGTCACCAGCACCACCCAGCAGATGATTG
ACCGGATATGTGTGAAGGTTCAGGATCACCTCAACTCCTTACGAGCCTGTGGGGGGGATGCTAT
TCAGGAGGATTTAAAGGCAGCAGAGCGGCTCATGCGAGATGCTAAGAATTCTAAAACGTTGTTA
CCAAATTTATACCATGTGGGCGGAGCATCATGGGCAGGAGCCAGTGGGCTGTCATCCAGTCCCA
TTCAGGAGATCCTGGAGTCAATGGCCGGAGAAGTCACAAGAGTTGTGGATGAACAACTGAAGGG
TTTGCTAGAATCTATGGTGGATGCGGCCGAGAACCTCTGCCCCAATGTCATGAGAAAAGCCCAC
ATCCGACAAGACCTGATCCACGCCAGCACCGAAAAGATTTCCATTCCACGAACCTTTGTTAAAA
ATGTCCTGTTGGAACAGTCTGGAATTGACATTCTTAACAAAATTAGTGAGGTGAAGCTGACAGT
GGCCTCGTTCTTGTCTGACCGAATCGTAGATGAGATCCTGGATTCTCTCTCCAACAGCCATCGG
AAGCTGGCCAACCATTTCAGCAGGCTAAGCAAGAGCCTTCCCCAGCGAGAGGACCTAGAGGTGG
AGCTGGTGGAGGAAAAGCCGGTGAAACGGGCCATACTTACGGTTGAGGATCTCACTGAGGTGGA
GAAGCTGGAAGACCTAGACACTTGTATGATGACTCCTAAGTCCAAGAGGAAGAGCATCCACAGC
CGAATGCTGCGGCCTGTCTCCAGGGCCTTTGAAATGGAGTTTGATCTTGATAAAGCCCTGGAAG
AGGTGCCGATTCACATCGAAGACCCGCCTTTCCCATCAGTCCGGCAGGAGAAGCGAAGCTCGGG
CTTGATCTCTGAGCTGCCCTCAGAGGAAGGCAGGAGACTGGAACACTTCACCAAGTTAAGGCCC
AAGAGGAACAAGAAGCAGCAACCTACACAAGCAGCGGTCTGTAGCATCAACATCATCCCCCATG
ATGGAGAACAGAATGGCCTCATGGGCAGAGTGGATGAAGGTGTAGATGAATTTTTCACCAAGAA
GGTGACTAAAATGGATTGCAAGAGGTCATCCACGCGCTGTTCAGATACCCACGACCTCGTAGAA
GGAGATGAGAAGAAAAAACGGGATTCTCGGAGAAGTGGCTTTCTCAACCTAATTAAATCCAGGT
CCAGATCTGAGCGGCCGCCCACGGTCCTGATGACAGAAGAGCTCTCCTCCCCGAAAGGGGCAGT
CCGGAGCCCACCAGTGGATACCGCCAGGAAGGAGATAAAGGCAGCTGAGCACAATGGTGCTCCA
GAACGCACAGAGGAGATGAGGACACCGGAGCCCCTGGAGGAGGGTCTAGCAGAGGAAGCTGGCA
GGGCTGAGCGCAGTGACAGCAGGGGCAGCCCACAGGGTGGCCGGCGCTATGTGCAGGTGATGGG
CAGCGGGCTGCTGGCGGAGATGAAGGCTAAACAGGAGCGGAGAGCAGCATGTGCGCAGAAGAAG
CTTGGCAACGATGTCATCTCCCAGGATCCCTCCAGCCCAGTCATGAGCAACACAGAGCGATTAG
ATGGAGGGGCAACAGTGCCTAAACTGCAACCAGGTCTTCCAGAGGCCCGCTTTGGTTTGGGAAC
ACCAGAAAAGAATGCCAAAGCTGAACCCAGGGTGGATGGAGGCTGCAGGTCCCGAAACTCCTCC
AGCATGCCCACCAGCCCGAAGCCCCTCCTTCAGTCCCCTAAGCCCAGCCCTGCAGCCCGGCCGT
CTATCCCTCAGAAGCCAAGAACTGCCTCCAAACCTGAAGATACCCCAGACTCTCCATCTGGTCC
TAGTTCCCCTAAAGTTGCCCTTCTTCCACCCATCCTCAAAAAAGTCTCCTTGGACAAAGAGCGT
GATGACCAGAGCAGCTCACAGTCCAGTCCTAGGACCTTCTCCCAGGAAGTAGTGCAGAGAGGAG
ATCATTTCAAAAGGCATTCAGATCATGACAAGCCTTCCAGTAGAGGGAAAAGATCTTCAAAACT
CTGCTTCGCCATTGCGGAAGAGGAAGTGAATGCACCTGGGTACAGGAAGTCACAGCCAACAAAT
GTCTCAAGGAGAAGCTGGGGCCCAGCCCAGGAGTATCAAGAACAAAAGCAACGGAACTTGGGCA
AAGATGGTCACCAGGGGAGCAAATCCAGTGACTCTGGAGAAGAGGCAGAAAAAGAGTTTATTTT
TGTGTAATATAATGGTGCCCACCCCAAGCCTTCCCATGCAAGGTGCTCTCTGCAGCCCTCAGAT
GCAGGGTTCTCTCTGCGGCCCTCAGAGCTGGGAGCAGTGCCTCTTGTCTCTTCTCTTGGTGCTT
TCTTCTTTTTCTCCTTTTCTTCTTTTTCTTATACCTCTATATTAAAACAAATTTTTGGTCTTCT
CCCCTTCTTGGCATTTGATTTCTAAACATTGTTTCTTATGCCTTCAACAAAAAGCCAGCAATTA
TTCCATGGGCCCTACTTGAATTTCTCTAAGGCAGCTACACATTGCCCTGCACGGTGAGTTGTTT
TTGGAAATTAATGAAGTAACTGGACTCACACCCAAGTAACTATCCAGGAGATCCTGGAGTGCTA
CAGGGTGTGTTTGTGTCAGACCCACACATGACTCAATATAGCAATTTATTCTTGATGTATGCAA
TTGCACATTGTAATTATATTAACAGCACACTAATAAATAATTTGTATAAATTATATATATATTA
GATCTTGGGCACTGTTCTTAACATTCTTTTGTGGGACATTTCCTTCCCCATGTAGAATTGTACA
TTTAAAGCTTGTTTGGTAATATTTGCAGACCATCAGCAAGCACAGCTAAGAACAGAGTGTGTGA
AGCCCAGATTCATGTATATAGTTGATTGGAATGAGGTCTTATGAATATTCATGTTTTTGAAGGC
CTTTAATTTCTGTCTGCTTATTAGTTTTTAATGTGTGGTTTTTAAAAGAAAATGTTGGCACCTG
TAAAAAAAAATCTAAATACTACTCTTTATAAATCATCTCACAAATATTCACTTACATTACAAGC
TGAAAGTATTTTATTCATATGTATATTTATACCAATAAAATGATTTTACAAGTGGAA

hide sequence

RefSeq Acc Id:

XM_017600541 ⟹ XP_017456030

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,822 - 41,516,204 (+)	NCBI
mRatBN7.2	17	40,807,925 - 41,088,326 (+)	NCBI
Rnor_6.0	17	43,050,284 - 43,339,403 (+)	NCBI

Sequence:

show sequence

GAGGAGGGGCGCCGAGTCCCGCGCCGCCGCAGCAGTCAGGGCAGCAGCCACCGCAGCGGAGCAC
CGCATCGGTCCCCGGGCTGTGCCCCGCGCCGGGCACGGTGCGCCCAGGCCCGGAGGCCGGCCGG
GGACCCGTGCGGAGGCCGCTCTCGCGAGGCGGGGAGGAGACGCAGGGGGACCAGGAGGAGGAGC
AGGAGAGGGTGAAGGAGAGGAGGAGGAGCGGGAGAAGGGGAAGGAGGAGAGCCGAGCCGGCCCG
CCCCTGCCCAGCCCAGCCCGCAGGAGGCCGAGACCAGCCCGGCGGCCCAGCCCTCGCCTTCCGC
TTCACCTACGCCCAAGGTGCGGCGCAGAGGCCGGGCTGCGCGGCGCCCGCCCCGGGAGAAGCCA
GTGCTGCAGCCGCCTTGCGTTCGGCCCCTGGAGCTGCGAGCCGAGAAGGCGGCATGTAGCTGCG
GCCGCAGAGCCAGCTCGGATTTGCAACTCTTAGGGTTTTTTTTTTTTTTTTTTCTTTTGGTACT
GAGGGCGCGCGGCAACCTTGGATCAACGCCCCGCTGCTCCGGCCGGCCCACTCTTTCCTTGCAA
GCTGCGGCTTCCTCGCGGAAACATTAACGGGTCTGGGGAAGGGCGCGGGGCCGAGAATCAGAGA
GTGGGACCCGAGATCTCCCCGCGCCCAGTGGGCAACCATGACCGACGAGAGCTCCGATGTCCCC
CGGGAGTTAATGGAAAGCATCAAGGATGTTATTGGCAGAAAGATCAAAATCTCGGTGAAGAAGA
AAGTGAAGTTGGAAGTGAAGGGTGACAGAGTGGAGAACAAAGTGCTGGTGCTCACATCATGCCG
AGCTTTCCTCCTGTCAGCACGCATCCCCACCAAGCTCGAGTTAACCTTCAGCTATCTAGAGATT
CATGGAGTCATCTGCCACAAACCTACTCAGATGGTTGTGGAAACTGAGAAGTGTAACGTGTCCA
TGAAGATGGCGTCACTGGAGGATGCGAGTGATGTGCTGGCTCACATAGGCACCTGCTTACGGAG
GATATTTCCGGGCCTTTCCCCACTGAGAATCATGAAGAAAGTCTCCATGGAGCCATCTGAGCGC
CTGGCCAGTCTCCAGGCCCTGTGGGACAGCCAGACCTTGGCTGAGCCAGGCCCCTGTGGTGGGT
TTTCTCAGATGTATGCCTGTGTATGCGACTGGCTGGGATTTTCGTACAGGGAAGAAGTGCAGTG
GGATGTGGATACAATTTATCTGACACAAGATACCAGGGAATTAAATTTACAAGACTTCAGTCAT
CTCGAGCACAGAGACCTGATTCCCATCATCGCTGCCCTGGAATATAACCAATGGTTCACCAAAC
TGTCCTCCAAGGATCTCAAGCTGTCCACGGATGTCTGTGAACAGATCTTGAGGGTGGTGAGTAG
GTCCAATCTACTGGAAGAGTTGGTGTTGGAAAATGCTGGACTCAGAACAGATTTTGCACAGAAA
TTGGCCAGTGCTCTAGCACACAATCCTAACTCAGGACTTCACACAATCAACCTTGCTGGGAACC
CGCTGGAGGATCGAGGCGTGTCCTCCTTAAGTATTCAATTTGCCAAACTCCCAAAGGGATTGAA
GCATTTGAACCTGTCTAAAACCTCATTGTCACCTAAAGGGGTGAATAGCCTTTGTCAGTCCCTC
AGTGCCAACCCTCTGACTGCCTCTACCCTCACCCACCTGGACCTCTCAGGGAATGTCCTCCGAG
GAGATGACCTCTCACACATGTACAATTTTTTGGCCCAGCCCAACACCATTGTTCATCTGGATCT
GTCTAATACTGAATGTTCTCTGGAGATGGTGTGTAGTGCTCTCCTCCGGGGATGCCTTCAGTGT
CTGGCCGTGCTCAATCTCTCCAGGTCTGTCTTCTCTCACAGGAAAGGAAAGGAAGTCCCTCCGT
CTTTCAAGCAGTTTTTCAGCAGTTCTCTGGCTTTGATCCAAATCAATCTTTCAGGCACAAAACT
GTCTCCCGAGCCCTTGAAGGCATTGCTCCTGGGCCTGGCCTGCAATCATAGTTTGAAGGGAGTC
TCTCTGGATCTCAGCAATTGTGAGCTGAGGTCCGGAGGAGCTCAAGTGTTAGAAGGCTGTATCG
CTGAAATCCACAACATCACCAGCTTAGATATCTCTGACAACGGTTTAGAATCTGACCTATCTAC
CCTGATTGTGTGGCTCAGTAGAAACAGATCAATACAGCACCTGGCGTTAGGCAAAAATTTTAAC
AATATGAAATCCAAAAATCTGACGCCTGTGTTGGACAACTTAGTGCAGATGATCCAAGATGAAG
ACTCTCCTCTGCAGTCCTTGTCCCTGGCTGACTCAAAACTCAAGACTGAAGTCACCATCATCAT
CAATGCCTTGGGCAGCAACACCTCCCTGACCAAAGTGGACATCAGTGGGAATAGCATGGGGGAC
ATGGGAGCGAAGATGCTGGCTAAGGCTCTACAGATCAACACCAAACTCAGGACAGTCATCTGGG
ACAAAAACAACATTACTGCACAAGGCTTCCAAGACATAGCCGTTGCTATGGAAAAGAACTACAC
ACTGAGATTTATGCCAATTCCAATGTATGATGCTTCTCAAGCTCTTAAAACAAGCCCTGAGAAG
ACAGAAGAGGCTCTGCAGAAGATAGAAAATTATCTGCTCCGGAATCACGAGACCAGGAAATACC
TTCAGGAGCAGGCCTACCGCCTCCAGCAAGGCATTGTCACCAGCACCACCCAGCAGATGATTGA
CCGGATATGTGTGAAGGTTCAGGATCACCTCAACTCCTTACGAGCCTGTGGGGGGGATGCTATT
CAGGAGGATTTAAAGGCAGCAGAGCGGCTCATGCGAGATGCTAAGAATTCTAAAACGTTGTTAC
CAAATTTATACCATGTGGGCGGAGCATCATGGGCAGGAGCCAGTGGGCTGTCATCCAGTCCCAT
TCAGGAGATCCTGGAGTCAATGGCCGGAGAAGTCACAAGAGTTGTGGATGAACAACTGAAGGGT
TTGCTAGAATCTATGGTGGATGCGGCCGAGAACCTCTGCCCCAATGTCATGAGAAAAGCCCACA
TCCGACAAGACCTGATCCACGCCAGCACCGAAAAGATTTCCATTCCACGAACCTTTGTTAAAAA
TGTCCTGTTGGAACAGTCTGGAATTGACATTCTTAACAAAATTAGTGAGGTGAAGCTGACAGTG
GCCTCGTTCTTGTCTGACCGAATCGTAGATGAGATCCTGGATTCTCTCTCCAACAGCCATCGGA
AGCTGGCCAACCATTTCAGCAGGCTAAGCAAGAGCCTTCCCCAGCGAGAGGACCTAGAGGTGGA
GCTGGTGGAGGAAAAGCCGGTGAAACGGGCCATACTTACGGTTGAGGATCTCACTGAGGTGGAG
AAGCTGGAAGACCTAGACACTTGTATGATGACTCCTAAGTCCAAGAGGAAGAGCATCCACAGCC
GAATGCTGCGGCCTGTCTCCAGGGCCTTTGAAATGGAGTTTGATCTTGATAAAGCCCTGGAAGA
GGTGCCGATTCACATCGAAGACCCGCCTTTCCCATCAGTCCGGCAGGAGAAGCGAAGCTCGGGC
TTGATCTCTGAGCTGCCCTCAGAGGAAGGCAGGAGACTGGAACACTTCACCAAGTTAAGGCCCA
AGAGGAACAAGAAGCAGCAACCTACACAAGCAGCGGTCTGTAGCATCAACATCATCCCCCATGA
TGGAGAACAGAATGGCCTCATGGGCAGAGTGGATGAAGGTGTAGATGAATTTTTCACCAAGAAG
GTGACTAAAATGGATTGCAAGAGGTCATCCACGCGCTGTTCAGATACCCACGACCTCGTAGAAG
GAGATGAGAAGAAAAAACGGGATTCTCGGAGAAGTGGCTTTCTCAACCTAATTAAATCCAGGTC
CAGATCTGAGCGGCCGCCCACGGTCCTGATGACAGAAGAGCTCTCCTCCCCGAAAGGGGCAGTC
CGGAGCCCACCAGTGGATACCGCCAGGAAGGAGATAAAGGCAGCTGAGCACAATGGTGCTCCAG
AACGCACAGAGGAGATGAGGACACCGGAGCCCCTGGAGGAGGGTCTAGCAGAGGAAGCTGGCAG
GGCTGAGCGCAGTGACAGCAGGGGCAGCCCACAGGGTGGCCGGCGCTATGTGCAGGTGATGGGC
AGCGGGCTGCTGGCGGAGATGAAGGCTAAACAGGAGCGGAGAGCAGCATGTGCGCAGAAGAAGC
TTGGCAACGATGTCATCTCCCAGGATCCCTCCAGCCCAGTCATGAGCAACACAGAGCGATTAGA
TGGAGGGGCAACAGTGCCTAAACTGCAACCAGGTCTTCCAGAGGCCCGCTTTGGTTTGGGAACA
CCAGAAAAGAATGCCAAAGCTGAACCCAGGGTGGATGGAGGCTGCAGGTCCCGAAACTCCTCCA
GCATGCCCACCAGCCCGAAGCCCCTCCTTCAGTCCCCTAAGCCCAGCCCTGCAGCCCGGCCGTC
TATCCCTCAGAAGCCAAGAACTGCCTCCAAACCTGAAGATACCCCAGACTCTCCATCTGGTCCT
AGTTCCCCTAAAGTTGCCCTTCTTCCACCCATCCTCAAAAAAGTCTCCTTGGACAAAGAGCGTG
ATGACCAGAGCAGCTCACAGTCCAGTCCTAGGACCTTCTCCCAGGAAGTCTCAAGGAGAAGCTG
GGGCCCAGCCCAGGAGTATCAAGAACAAAAGCAACGGAACTTGGGCAAAGATGGTCACCAGGGG
AGCAAATCCAGTGACTCTGGAGAAGAGGCAGAAAAAGAGTTTATTTTTGTGTAATATAATGGTG
CCCACCCCAAGCCTTCCCATGCAAGGTGCTCTCTGCAGCCCTCAGATGCAGGGTTCTCTCTGCG
GCCCTCAGAGCTGGGAGCAGTGCCTCTTGTCTCTTCTCTTGGTGCTTTCTTCTTTTTCTCCTTT
TCTTCTTTTTCTTATACCTCTATATTAAAACAAATTTTTGGTCTTCTCCCCTTCTTGGCATTTG
ATTTCTAAACATTGTTTCTTATGCCTTCAACAAAAAGCCAGCAATTATTCCATGGGCCCTACTT
GAATTTCTCTAAGGCAGCTACACATTGCCCTGCACGGTGAGTTGTTTTTGGAAATTAATGAAGT
AACTGGACTCACACCCAAGTAACTATCCAGGAGATCCTGGAGTGCTACAGGGTGTGTTTGTGTC
AGACCCACACATGACTCAATATAGCAATTTATTCTTGATGTATGCAATTGCACATTGTAATTAT
ATTAACAGCACACTAATAAATAATTTGTATAAATTATATATATATTAGATCTTGGGCACTGTTC
TTAACATTCTTTTGTGGGACATTTCCTTCCCCATGTAGAATTGTACATTTAAAGCTTGTTTGGT
AATATTTGCAGACCATCAGCAAGCACAGCTAAGAACAGAGTGTGTGAAGCCCAGATTCATGTAT
ATAGTTGATTGGAATGAGGTCTTATGAATATTCATGTTTTTGAAGGCCTTTAATTTCTGTCTGC
TTATTAGTTTTTAATGTGTGGTTTTTAAAAGAAAATGTTGGCACCTGTAAAAAAAAATCTAAAT
ACTACTCTTTATAAATCATCTCACAAATATTCACTTACATTACAAGCTGAAAGTATTTTATTCA
TATGTATATTTATACCAATAAAATGATTTTACAAGTGGAA

hide sequence

RefSeq Acc Id:

XM_039095698 ⟹ XP_038951626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,822 - 41,515,317 (+)	NCBI
mRatBN7.2	17	40,807,925 - 41,087,446 (+)	NCBI

RefSeq Acc Id:

XM_063276418 ⟹ XP_063132488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,822 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276419 ⟹ XP_063132489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,823 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276420 ⟹ XP_063132490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,820 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276421 ⟹ XP_063132491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,820 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276422 ⟹ XP_063132492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,821 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276423 ⟹ XP_063132493

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,819 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276424 ⟹ XP_063132494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,296,240 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276425 ⟹ XP_063132495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,821 - 41,515,317 (+)	NCBI

RefSeq Acc Id:

XM_063276426 ⟹ XP_063132496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,821 - 41,509,165 (+)	NCBI

RefSeq Acc Id:

XM_063276427 ⟹ XP_063132497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,821 - 41,509,145 (+)	NCBI

RefSeq Acc Id:

XM_063276428 ⟹ XP_063132498

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,819 - 41,516,204 (+)	NCBI

RefSeq Acc Id:

XM_063276429 ⟹ XP_063132499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,819 - 41,515,324 (+)	NCBI

RefSeq Acc Id:

XM_063276430 ⟹ XP_063132500

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,819 - 41,509,166 (+)	NCBI

RefSeq Acc Id:

XM_063276431 ⟹ XP_063132501

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	41,235,820 - 41,515,317 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178621	(Get FASTA)	NCBI Sequence Viewer
	NP_001427184	(Get FASTA)	NCBI Sequence Viewer
	NP_001427185	(Get FASTA)	NCBI Sequence Viewer
	NP_001427186	(Get FASTA)	NCBI Sequence Viewer
	XP_008769864	(Get FASTA)	NCBI Sequence Viewer
	XP_008769866	(Get FASTA)	NCBI Sequence Viewer
	XP_017456030	(Get FASTA)	NCBI Sequence Viewer
	XP_038951626	(Get FASTA)	NCBI Sequence Viewer
	XP_063132488	(Get FASTA)	NCBI Sequence Viewer
	XP_063132489	(Get FASTA)	NCBI Sequence Viewer
	XP_063132490	(Get FASTA)	NCBI Sequence Viewer
	XP_063132491	(Get FASTA)	NCBI Sequence Viewer
	XP_063132492	(Get FASTA)	NCBI Sequence Viewer
	XP_063132493	(Get FASTA)	NCBI Sequence Viewer
	XP_063132494	(Get FASTA)	NCBI Sequence Viewer
	XP_063132495	(Get FASTA)	NCBI Sequence Viewer
	XP_063132496	(Get FASTA)	NCBI Sequence Viewer
	XP_063132497	(Get FASTA)	NCBI Sequence Viewer
	XP_063132498	(Get FASTA)	NCBI Sequence Viewer
	XP_063132499	(Get FASTA)	NCBI Sequence Viewer
	XP_063132500	(Get FASTA)	NCBI Sequence Viewer
	XP_063132501	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056268
	ENSRNOP00000056268.4
	ENSRNOP00000070264
	ENSRNOP00000070264.3
	ENSRNOP00000081294
	ENSRNOP00000081294.2
	ENSRNOP00000085444
	ENSRNOP00000085444.2
	ENSRNOP00000095539
	ENSRNOP00000095539.2
	ENSRNOP00000099065
	ENSRNOP00000099065.1
	ENSRNOP00000102732
	ENSRNOP00000102732.1

RefSeq Acc Id:

NP_001178621 ⟸ NM_001191692

- UniProtKB:

A0A0G2JXG7 (UniProtKB/TrEMBL), A0A8I6AJW0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENKVLVLTSCRAFLLSARIPTKL
ELTFSYLEIHGVICHKPTQMVVETEKCNVSMKMASLEDASDVLAHIGTCLRRIFPGLSPLRIMK
KVSMEPSERLASLQALWDSQTLAEPGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTR
ELNLQDFSHLEHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNLLEELVLENA
GLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPK
GVNSLCQSLSANPLTASTLTHLDLSGNVLRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCS
ALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGL
ACNHSLKGVSLDLSNCELGHCLRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSRN
RSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTIIINALGSNTS
LTKVDISGNSMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPM
YDASQALKTSPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQD
HLNSLRACGGDAIQEDLKAAERLMRDAKNSKTLLPNLYHVGGASWAGASGLSSSPIQEILESMA
GEVTRVVDEQLKGLLESMVDAAENLCPNVMRKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGI
DILNKISEVKLTVASFLSDRIVDEILDSLSNSHRKLANHFSRLSKSLPQREDLEVELVEEKPVK
RAILTVEDLTEVEKLEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDP
PFPSVRQEKRSSGLISELPSEEGRRLEHFTKLRPKRNKKQQPTQAAVCSINIIPHDGEQNGLMG
RVDEGVDEFFTKKVTKMDCKRSSTRCSDTHDLVEGDEKKKRDSRRSGFLNLIKSRSRSERPPTV
LMTEELSSPKGAVRSPPVDTARKEIKAAEHNGAPERTEEMRTPEPLEEGLAEEAGRAERSDSRG
SPQGGRRYVQVMGSGLLAEMKAKQERRAACAQKKLGNDVISQDPSSPVMSNTERLDGGATVPKL
QPGLPEARFGLGTPEKNAKAEPRVDGGCRSRNSSSMPTSPKPLLQSPKPSPAARPSIPQKPRTA
SKPEDTPDSPSGPSSPKVALLPPILKKVSLDKERDDQSSSQSSPRTFSQEVSRRSWGPAQEYQE
QKQRNLGKDGHQGSKSSDSGEEAEKEFIFV

hide sequence

RefSeq Acc Id:	XP_008769864 ⟸ XM_008771642
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENKVLVLTSCRAFLLSARIPTKL ELTFSYLEIHGVICHKPTQMVVETEKCNVSMKMASLEDASDVLAHIGTCLRRIFPGLSPLRIMK KVSMEPSERLASLQALWDSQTLAEPGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTR ELNLQDFSHLEHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNLLEELVLENA GLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPK GVNSLCQSLSANPLTASTLTHLDLSGNVLRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCS ALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGL ACNHSLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSRNRSIQ HLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTIIINALGSNTSLTKV DISGNSMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDAS QALKTSPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQDHLNS LRACGGDAIQEDLKAAERLMRDAKNSKTLLPNLYHVGGASWAGASGLSSSPIQEILESMAGEVT RVVDEQLKGLLESMVDAAENLCPNVMRKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILN KISEVKLTVASFLSDRIVDEILDSLSNSHRKLANHFSRLSKSLPQREDLEVELVEEKPVKRAIL TVEDLTEVEKLEDLDTCMTLCCTSMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIE DPPFPSVRQEKRSSGLISELPSEEGRRLEHFTKLRPKRNKKQQPTQAAVCSINIIPHDGEQNGL MGRVDEGVDEFFTKKVTKMDCKRSSTRCSDTHDLVEGDEKKKRDSRRSGFLNLIKSRSRSERPP TVLMTEELSSPKGAVRSPPVDTARKEIKAAEHNGAPERTEEMRTPEPLEEGLAEEAGRAERSDS RGSPQGGRRYVQVMGSGLLAEMKAKQERRAACAQKKLGNDVISQDPSSPVMSNTERLDGGATVP KLQPGLPEARFGLGTPEKNAKAEPRVDGGCRSRNSSSMPTSPKPLLQSPKPSPAARPSIPQKPR TASKPEDTPDSPSGPSSPKVALLPPILKKVSLDKERDDQSSSQSSPRTFSQEVVQRGDHFKRHS DHDKPSSRGKRSSKLCFAIAEEEVNAPGYRKSQPTNVSRRSWGPAQEYQEQKQRNLGKDGHQGS KSSDSGEEAEKEFIFV hide sequence

RefSeq Acc Id:

XP_008769866 ⟸ XM_008771644

- Peptide Label:

isoform X3

- Sequence:

show sequence

MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENKVLVLTSCRAFLLSARIPTKL
ELTFSYLEIHGVICHKPTQMVVETEKCNVSMKMASLEDASDVLAHIGTCLRRIFPGLSPLRIMK
KVSMEPSERLASLQALWDSQTLAEPGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTR
ELNLQDFSHLEHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNLLEELVLENA
GLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPK
GVNSLCQSLSANPLTASTLTHLDLSGNVLRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCS
ALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGL
ACNHSLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSRNRSIQ
HLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTIIINALGSNTSLTKV
DISGNSMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDAS
QALKTSPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQDHLNS
LRACGGDAIQEDLKAAERLMRDAKNSKTLLPNLYHVGGASWAGASGLSSSPIQEILESMAGEVT
RVVDEQLKGLLESMVDAAENLCPNVMRKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILN
KISEVKLTVASFLSDRIVDEILDSLSNSHRKLANHFSRLSKSLPQREDLEVELVEEKPVKRAIL
TVEDLTEVEKLEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPS
VRQEKRSSGLISELPSEEGRRLEHFTKLRPKRNKKQQPTQAAVCSINIIPHDGEQNGLMGRVDE
GVDEFFTKKVTKMDCKRSSTRCSDTHDLVEGDEKKKRDSRRSGFLNLIKSRSRSERPPTVLMTE
ELSSPKGAVRSPPVDTARKEIKAAEHNGAPERTEEMRTPEPLEEGLAEEAGRAERSDSRGSPQG
GRRYVQVMGSGLLAEMKAKQERRAACAQKKLGNDVISQDPSSPVMSNTERLDGGATVPKLQPGL
PEARFGLGTPEKNAKAEPRVDGGCRSRNSSSMPTSPKPLLQSPKPSPAARPSIPQKPRTASKPE
DTPDSPSGPSSPKVALLPPILKKVSLDKERDDQSSSQSSPRTFSQEVVQRGDHFKRHSDHDKPS
SRGKRSSKLCFAIAEEEVNAPGYRKSQPTNVSRRSWGPAQEYQEQKQRNLGKDGHQGSKSSDSG
EEAEKEFIFV

hide sequence

RefSeq Acc Id:

XP_017456030 ⟸ XM_017600541

- Peptide Label:

isoform X8

- Sequence:

show sequence

MTDESSDVPRELMESIKDVIGRKIKISVKKKVKLEVKGDRVENKVLVLTSCRAFLLSARIPTKL
ELTFSYLEIHGVICHKPTQMVVETEKCNVSMKMASLEDASDVLAHIGTCLRRIFPGLSPLRIMK
KVSMEPSERLASLQALWDSQTLAEPGPCGGFSQMYACVCDWLGFSYREEVQWDVDTIYLTQDTR
ELNLQDFSHLEHRDLIPIIAALEYNQWFTKLSSKDLKLSTDVCEQILRVVSRSNLLEELVLENA
GLRTDFAQKLASALAHNPNSGLHTINLAGNPLEDRGVSSLSIQFAKLPKGLKHLNLSKTSLSPK
GVNSLCQSLSANPLTASTLTHLDLSGNVLRGDDLSHMYNFLAQPNTIVHLDLSNTECSLEMVCS
ALLRGCLQCLAVLNLSRSVFSHRKGKEVPPSFKQFFSSSLALIQINLSGTKLSPEPLKALLLGL
ACNHSLKGVSLDLSNCELRSGGAQVLEGCIAEIHNITSLDISDNGLESDLSTLIVWLSRNRSIQ
HLALGKNFNNMKSKNLTPVLDNLVQMIQDEDSPLQSLSLADSKLKTEVTIIINALGSNTSLTKV
DISGNSMGDMGAKMLAKALQINTKLRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDAS
QALKTSPEKTEEALQKIENYLLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQDHLNS
LRACGGDAIQEDLKAAERLMRDAKNSKTLLPNLYHVGGASWAGASGLSSSPIQEILESMAGEVT
RVVDEQLKGLLESMVDAAENLCPNVMRKAHIRQDLIHASTEKISIPRTFVKNVLLEQSGIDILN
KISEVKLTVASFLSDRIVDEILDSLSNSHRKLANHFSRLSKSLPQREDLEVELVEEKPVKRAIL
TVEDLTEVEKLEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPS
VRQEKRSSGLISELPSEEGRRLEHFTKLRPKRNKKQQPTQAAVCSINIIPHDGEQNGLMGRVDE
GVDEFFTKKVTKMDCKRSSTRCSDTHDLVEGDEKKKRDSRRSGFLNLIKSRSRSERPPTVLMTE
ELSSPKGAVRSPPVDTARKEIKAAEHNGAPERTEEMRTPEPLEEGLAEEAGRAERSDSRGSPQG
GRRYVQVMGSGLLAEMKAKQERRAACAQKKLGNDVISQDPSSPVMSNTERLDGGATVPKLQPGL
PEARFGLGTPEKNAKAEPRVDGGCRSRNSSSMPTSPKPLLQSPKPSPAARPSIPQKPRTASKPE
DTPDSPSGPSSPKVALLPPILKKVSLDKERDDQSSSQSSPRTFSQEVSRRSWGPAQEYQEQKQR
NLGKDGHQGSKSSDSGEEAEKEFIFV

hide sequence

Ensembl Acc Id:

ENSRNOP00000070264 ⟸ ENSRNOT00000080745

Ensembl Acc Id:

ENSRNOP00000056268 ⟸ ENSRNOT00000059510

RefSeq Acc Id:	XP_038951626 ⟸ XM_039095698
- Peptide Label:	isoform X12
- UniProtKB:	A0A8I6A2B1 (UniProtKB/TrEMBL), A0A8I6G5R0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081294 ⟸ ENSRNOT00000117749

Ensembl Acc Id:

ENSRNOP00000085444 ⟸ ENSRNOT00000108358

Ensembl Acc Id:

ENSRNOP00000095539 ⟸ ENSRNOT00000104932

RefSeq Acc Id:	XP_063132493 ⟸ XM_063276423
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132498 ⟸ XM_063276428
- Peptide Label:	isoform X13
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132499 ⟸ XM_063276429
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132500 ⟸ XM_063276430
- Peptide Label:	isoform X14
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132490 ⟸ XM_063276420
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132491 ⟸ XM_063276421
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132501 ⟸ XM_063276431
- Peptide Label:	isoform X15
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132492 ⟸ XM_063276422
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132495 ⟸ XM_063276425
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132496 ⟸ XM_063276426
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132497 ⟸ XM_063276427
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6G5R0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132488 ⟸ XM_063276418
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063132489 ⟸ XM_063276419
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063132494 ⟸ XM_063276424
- Peptide Label:	isoform X10
- UniProtKB:	A0A8I6AJW0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000099065 ⟸ ENSRNOT00000121246

Ensembl Acc Id:

ENSRNOP00000102732 ⟸ ENSRNOT00000164795

Protein Domains

CARMIL C-terminal CARMIL pleckstrin homology

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JXG7-F1-model_v2	AlphaFold	A0A0G2JXG7	1-1421	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700454

Promoter ID:

EPDNEW_R10971

Type:

single initiation site

Name:

Carmil1_1

Description:

capping protein regulator and myosin 1 linker 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	43,050,791 - 43,050,851	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306623	AgrOrtholog
BioCyc Gene	G2FUF-9405	BioCyc
Ensembl Genes	ENSRNOG00000016576	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059510	ENTREZGENE
	ENSRNOT00000059510.5	UniProtKB/TrEMBL
	ENSRNOT00000080745	ENTREZGENE
	ENSRNOT00000080745.3	UniProtKB/TrEMBL
	ENSRNOT00000104932	ENTREZGENE
	ENSRNOT00000104932.2	UniProtKB/TrEMBL
	ENSRNOT00000108358	ENTREZGENE
	ENSRNOT00000108358.2	UniProtKB/TrEMBL
	ENSRNOT00000117749	ENTREZGENE
	ENSRNOT00000117749.2	UniProtKB/TrEMBL
	ENSRNOT00000121246	ENTREZGENE
	ENSRNOT00000121246.1	UniProtKB/TrEMBL
	ENSRNOT00000164795	ENTREZGENE
	ENSRNOT00000164795.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
	6.10.140.1850	UniProtKB/TrEMBL
InterPro	CARMIL_C	UniProtKB/TrEMBL
	CARMIL_PH	UniProtKB/TrEMBL
	L_dom-like	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PP1-Reg/Actin-Interact_Protein	UniProtKB/TrEMBL
KEGG Report	rno:306941	UniProtKB/TrEMBL
NCBI Gene	306941	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT, ISOFORM F-RELATED	UniProtKB/TrEMBL
	PTHR24112:SF39	UniProtKB/TrEMBL
Pfam	Carm_PH	UniProtKB/TrEMBL
	CARMIL_C	UniProtKB/TrEMBL
	LRR_6	UniProtKB/TrEMBL
PhenoGen	Carmil1	PhenoGen
RatGTEx	ENSRNOG00000016576	RatGTEx
SMART	LRR_RI	UniProtKB/TrEMBL
Superfamily-SCOP	RNI-like	UniProtKB/TrEMBL
UniProt	A0A0G2JXG7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A2B1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJW0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6G5R0	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L4Y7_RAT	UniProtKB/TrEMBL
	A0ABK0LHE9_RAT	UniProtKB/TrEMBL
	F1M0N7_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-22	Carmil1	capping protein regulator and myosin 1 linker 1	Lrrc16a	leucine rich repeat containing 16A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-15	Lrrc16a	leucine rich repeat containing 16A	Lrrc16	leucine rich repeat containing 16	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-14	Lrrc16	leucine rich repeat containing 16	Lrrc16_predicted	leucine rich repeat containing 16 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Lrrc16_predicted	leucine rich repeat containing 16 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar