Advanced Search (OLGA)

Gene: Rrp15 (ribosomal RNA processing 15 homolog) Rattus norvegicus

Analyze

Symbol:

Rrp15

Name:

ribosomal RNA processing 15 homolog

RGD ID:

1306106

Description:

Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to be part of preribosome, large subunit precursor. Orthologous to human RRP15 (ribosomal RNA processing 15 homolog); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360895; MGC105708; RGD1306106; ribosomal RNA processing 15 homolog (S. cerevisiae); ribosomal RNA-processing protein 15; RRP15-like protein; similar to RIKEN cDNA 2810430M08

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RRP15 (ribosomal RNA processing 15 homolog)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RRP15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rrp15 (ribosomal RNA processing 15 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rrp15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RRP15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rrp15 (ribosomal RNA processing 15 homolog)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F53E10.6	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	F53E10.6	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG3817	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RRP15	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	RRP15	Alliance	DIOPT (OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	rrp15	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	100,807,722 - 100,830,834 (-)	Ensembl				GRCr8
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	100,793,786 - 100,816,887 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	102,180,954 - 102,204,035 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	99,376,101 - 99,399,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	97,784,470 - 97,807,553 (-)	NCBI		Celera
RGSC_v3.1	13	103,022,855 - 103,045,937 (-)	NCBI
Cytogenetic Map	13	q26	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-alpha-phellandrene (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium dichloride (EXP)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

coumarin (ISO)

coumestrol (ISO)

crotonaldehyde (ISO)

cyclosporin A (ISO)

DDE (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (ISO)

glafenine (EXP)

hydrogen peroxide (ISO)

ivermectin (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

phenobarbital (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

maturation of 5.8S rRNA (IBA)

maturation of LSU-rRNA (IBA)

rRNA processing (IEA)

Cellular Component

preribosome, large subunit precursor (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:15769876

Genomics

Comparative Map Data

Rrp15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	100,807,722 - 100,830,834 (-)	Ensembl				GRCr8
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	100,793,786 - 100,816,887 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	102,180,954 - 102,204,035 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	99,376,101 - 99,399,202 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	97,784,470 - 97,807,553 (-)	NCBI		Celera
RGSC_v3.1	13	103,022,855 - 103,045,937 (-)	NCBI
Cytogenetic Map	13	q26	NCBI

RRP15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	218,285,293 - 218,337,983 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	218,285,290 - 218,337,983 (+)	Ensembl			hg38	GRCh38
GRCh37	1	218,458,635 - 218,511,325 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	216,525,252 - 216,577,948 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	191,675,091 - 191,727,786 (+)	NCBI		Celera
Cytogenetic Map	1	q41	NCBI
HuRef	1	189,126,828 - 189,179,495 (+)	NCBI		HuRef
CHM1_1	1	219,730,946 - 219,783,677 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	217,520,058 - 217,572,747 (+)	NCBI		T2T-CHM13v2.0

Rrp15
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	186,453,283 - 186,481,555 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	186,453,175 - 186,481,555 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	186,721,086 - 186,749,358 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	186,720,978 - 186,749,358 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	188,544,965 - 188,573,237 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	188,421,880 - 188,452,712 (-)	NCBI		MGSCv36	mm8
Celera	1	193,664,585 - 193,683,559 (-)	NCBI		Celera
Cytogenetic Map	1	H5	NCBI
cM Map	1	89.95	NCBI

Rrp15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	262,346 - 296,439 (-)	Ensembl
ChiLan1.0	NW_004955406	260,447 - 295,842 (-)	NCBI	ChiLan1.0	ChiLan1.0

RRP15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	31,074,833 - 31,121,954 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	31,037,398 - 31,083,991 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	193,846,921 - 193,900,077 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	198,698,849 - 198,745,011 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	198,698,850 - 198,745,011 (+)	Ensembl			panPan2	panpan1.1

RRP15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	13,377,518 - 13,416,809 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	13,377,571 - 13,421,810 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	13,419,617 - 13,459,111 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	13,411,023 - 13,450,593 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	13,409,972 - 13,456,853 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	13,420,320 - 13,466,150 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	13,766,942 - 13,812,671 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	14,075,819 - 14,121,556 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rrp15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	58,391,000 - 58,446,398 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936628	408,911 - 456,425 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936628	408,854 - 456,464 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RRP15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	8,253,822 - 8,303,860 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	10	8,253,798 - 8,296,143 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	10,300,927 - 10,339,246 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RRP15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	11,273,756 - 11,318,280 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	11,274,241 - 11,318,290 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	11,685,342 - 11,729,923 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rrp15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624835	2,314,499 - 2,349,259 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624835	2,314,341 - 2,355,741 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rrp15
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	64,860,452 - 64,881,320 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rrp15
116 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	47
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000003359
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH130884

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	98,276,305 - 98,276,522 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	105,155,854 - 105,156,070	NCBI	Rnor6.0
Rnor_5.0	13	109,807,427 - 109,807,643	UniSTS	Rnor5.0
RGSC_v3.4	13	102,833,842 - 102,834,058	UniSTS	RGSC3.4
Celera	13	97,784,500 - 97,784,716	UniSTS
RH 3.4 Map	13	670.0	UniSTS
Cytogenetic Map	13	q26	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	65	161	91	90	59	92	59	6	354	190	11	140	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC127006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003359 ⟹ ENSRNOP00000003359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	100,807,722 - 100,830,834 (-)	Ensembl
mRatBN7.2 Ensembl	13	98,276,134 - 98,299,370 (-)	Ensembl
Rnor_6.0 Ensembl	13	105,155,441 - 105,179,095 (-)	Ensembl

RefSeq Acc Id:

NM_001009702 ⟹ NP_001009702

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	100,807,729 - 100,830,812 (-)	NCBI
mRatBN7.2	13	98,276,276 - 98,299,357 (-)	NCBI
Rnor_6.0	13	105,155,824 - 105,178,907 (-)	NCBI
Rnor_5.0	13	109,807,397 - 109,830,711 (-)	NCBI
RGSC_v3.4	13	102,833,812 - 102,856,894 (-)	RGD
Celera	13	97,784,470 - 97,807,553 (-)	RGD

Sequence:

show sequence

CAAAATGGCTGCGGCCGTTCAGGACTCACGTGTGAACCCCGGAGGAAAGCTGAAGCGTTCCCCG
AAGAAAAAGAAAAAAATGAAGAAGGTAGCCAAGGCTGCAGTGTCGAAGCTAGAAGATGAGCTCA
AAGACTCTTCCGGCGGAGAAGGAAGCTGTGAGTCAGAGATGGACGACTCAGACGATGGAGCTGC
AGAAGCAGACAGCGAGGACAACGTTGAATCCTGTGAGGAGGAAAATGAAGTCGCTGCAGAATCG
AGTGCTGGGACTAATTCGGGCTGGGCAGATGCCATGGCAAAAATCCTTAACAAAAAGACTCCTA
AAAGCAAACCCACCATCCTGACCAAAAACAAAGAGCTGGAGAAGGAGAAGGAGAAGCTAAAGCA
GGAGAGGCTGGAGAAAAGGAAGCAGATTGATAAGAAGCGGGAGTGGGAAATGCTGTGCAGAGTG
AAGCCAGATGTCATCAAAGACAAAGAGGCAGAGAGGAACCTTCAGAGGATTGCGACAAGGGGCG
TGGTGCAGCTCTTCAATGCTGTTCAGAAACACCAGAGGAATGTTGACGAAAAGGTTAAGGAAGT
AGGAGGCTCCATCCGGAAGCGAGCTAAGCTGATGTCAACTGTTTCCAAGAAGGATTTCATCAGT
GTTCTGCGAGGAATGGATGGTGCAAGTGAGAACAGTTCTGCTGGGAAGAGCCCCAAAGCCAGAC
AGACCGAAGTGAAATCAGAGGAGGGTCCGGGGTGGAAGATTCTGCGAGATGACTTCATGATGGG
CGCCAGCATGAAGGACTGGGACAAGGAGAGCGAGGGTGAGGAGCCTGCTGACGGCCAGGCAGGG
TCGGCCAGCCACTGAGCAGACGATGGGAGCATCCGGCTCTCCTGCAAGCAGCCCCGAAGGCGAA
GGCGGCGGGAGCCTCGGGGCCATCTGCTAAGTGCCAGGACCTCCTGAGAGCCTGAGCTCAGGGC
TCCCACGTGCAGACTGTACTAAAGTTGTATTTTTAATTCTTATGTACATTTAAGCCGTTTTTCC
AAAATATTTGTACAATGGAATATGTTTTTTACTTGAACAGTAAGATGTGCATTTTCTAGGACCC
TTTCTGTGGACACATGCGGATCGCACACCAGCGTTAAAGTGCAGACCCATTTAGAATTAAAATG
AATTTGATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001009702	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87649	(Get FASTA)	NCBI Sequence Viewer
	EDL94933	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003359
	ENSRNOP00000003359.4
GenBank Protein	Q5M947	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001009702 ⟸ NM_001009702

- UniProtKB:

Q5M947 (UniProtKB/Swiss-Prot), A6JGS7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAAVQDSRVNPGGKLKRSPKKKKKMKKVAKAAVSKLEDELKDSSGGEGSCESEMDDSDDGAAE
ADSEDNVESCEEENEVAAESSAGTNSGWADAMAKILNKKTPKSKPTILTKNKELEKEKEKLKQE
RLEKRKQIDKKREWEMLCRVKPDVIKDKEAERNLQRIATRGVVQLFNAVQKHQRNVDEKVKEVG
GSIRKRAKLMSTVSKKDFISVLRGMDGASENSSAGKSPKARQTEVKSEEGPGWKILRDDFMMGA
SMKDWDKESEGEEPADGQAGSASH

hide sequence

Ensembl Acc Id:

ENSRNOP00000003359 ⟸ ENSRNOT00000003359

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M947-F1-model_v2	AlphaFold	Q5M947	1-280	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699098

Promoter ID:

EPDNEW_R9623

Type:

multiple initiation site

Name:

Rrp15_1

Description:

ribosomal RNA processing 15 homolog

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	105,178,922 - 105,178,982	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1306106	AgrOrtholog
BioCyc Gene	G2FUF-16956	BioCyc
Ensembl Genes	ENSRNOG00000002450	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000003359	ENTREZGENE
	ENSRNOT00000003359.7	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7310706	IMAGE-MGC_LOAD
InterPro	Rrp15	UniProtKB/Swiss-Prot
KEGG Report	rno:360895	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105708	IMAGE-MGC_LOAD
NCBI Gene	360895	ENTREZGENE
PANTHER	PTHR13245	UniProtKB/Swiss-Prot
	RRP15-LIKE PROTEIN	UniProtKB/Swiss-Prot
Pfam	Rrp15p	UniProtKB/Swiss-Prot
PhenoGen	Rrp15	PhenoGen
RatGTEx	ENSRNOG00000002450	RatGTEx
UniProt	A6JGS7	ENTREZGENE, UniProtKB/TrEMBL
	Q5M947	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-30	Rrp15	ribosomal RNA processing 15 homolog	Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Rrp15	ribosomal RNA processing 15 homolog (S. cerevisiae)	RGD1306106	similar to RIKEN cDNA 2810430M08	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1306106	similar to RIKEN cDNA 2810430M08	RGD1306106_predicted	similar to RIKEN cDNA 2810430M08 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1306106_predicted	similar to RIKEN cDNA 2810430M08 (predicted)	LOC360895_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC360895_predicted	similar to RIKEN cDNA 2810430M08 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message