Alg3 (ALG3, alpha-1,3- mannosyltransferase) - Rat Genome Database

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Gene: Alg3 (ALG3, alpha-1,3- mannosyltransferase) Rattus norvegicus
Analyze
Symbol: Alg3
Name: ALG3, alpha-1,3- mannosyltransferase
RGD ID: 1306004
Description: Predicted to enable dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Id. Orthologous to human ALG3 (ALG3 alpha-1,3- mannosyltransferase); PARTICIPATES IN N-linked glycan biosynthetic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 4-amino-2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: alpha-1,3-mannosyltransferase ALG3; asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase); asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase); asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog; asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae); dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase; dolichyl-P-Man:Man(5)GlcNAc(2)-PP-dolichyl mannosyltransferase; LOC287983
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,804,859 - 93,810,403 (+)NCBIGRCr8
mRatBN7.21180,300,487 - 80,306,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,300,498 - 80,307,912 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,023,173 - 89,028,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,676,592 - 81,682,046 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,737,658 - 80,743,112 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,985,484 - 83,991,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,986,230 - 83,991,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,058,546 - 87,064,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,507,540 - 82,535,341 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,589,355 - 82,592,930 (+)NCBI
Celera1179,140,177 - 79,145,649 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10581255   PMID:12477932  


Genomics

Comparative Map Data
Alg3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81193,804,859 - 93,810,403 (+)NCBIGRCr8
mRatBN7.21180,300,487 - 80,306,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1180,300,498 - 80,307,912 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,023,173 - 89,028,627 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01181,676,592 - 81,682,046 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01180,737,658 - 80,743,112 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01183,985,484 - 83,991,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1183,986,230 - 83,991,706 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,058,546 - 87,064,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41182,507,540 - 82,535,341 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11182,589,355 - 82,592,930 (+)NCBI
Celera1179,140,177 - 79,145,649 (+)NCBICelera
Cytogenetic Map11q23NCBI
ALG3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383184,242,301 - 184,249,525 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3184,242,301 - 184,249,548 (-)EnsemblGRCh38hg38GRCh38
GRCh373183,960,089 - 183,967,313 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363185,442,811 - 185,449,440 (-)NCBINCBI36Build 36hg18NCBI36
Build 343185,442,818 - 185,449,448NCBI
Celera3182,400,881 - 182,408,077 (-)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3181,367,086 - 181,374,282 (-)NCBIHuRef
CHM1_13183,924,539 - 183,931,735 (-)NCBICHM1_1
T2T-CHM13v2.03187,051,585 - 187,058,813 (-)NCBIT2T-CHM13v2.0
Alg3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391620,424,208 - 20,429,515 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1620,424,124 - 20,430,485 (-)EnsemblGRCm39 Ensembl
GRCm381620,605,458 - 20,610,761 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1620,605,374 - 20,611,735 (-)EnsemblGRCm38mm10GRCm38
MGSCv371620,605,531 - 20,610,822 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361620,519,015 - 20,524,287 (-)NCBIMGSCv36mm8
Celera1621,169,534 - 21,174,825 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.48NCBI
Alg3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542023,236,686 - 23,241,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542023,236,686 - 23,241,936 (+)NCBIChiLan1.0ChiLan1.0
ALG3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22182,112,857 - 182,119,809 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13182,117,574 - 182,124,526 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03181,276,843 - 181,284,094 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13189,759,699 - 189,766,739 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3189,759,699 - 189,766,391 (-)Ensemblpanpan1.1panPan2
ALG3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13417,135,362 - 17,141,284 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3417,132,853 - 17,152,901 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3421,221,669 - 21,227,692 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03417,042,991 - 17,048,994 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3417,043,096 - 17,048,455 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13417,080,327 - 17,086,336 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03417,076,183 - 17,082,192 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03417,306,412 - 17,312,419 (-)NCBIUU_Cfam_GSD_1.0
Alg3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602119,524,744 - 119,533,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365785,616,617 - 5,622,206 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365785,616,617 - 5,622,206 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALG3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13122,141,967 - 122,148,206 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113122,142,044 - 122,148,777 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213131,581,813 - 131,588,373 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALG3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1155,175,904 - 5,182,444 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl155,175,930 - 5,182,359 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606313,953,113 - 13,959,764 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Alg3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473072,337,547 - 72,343,451 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473072,337,262 - 72,343,458 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Alg3
16 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:45
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000002331, ENSRNOT00000073703
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

Markers in Region
RH118405  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,305,753 - 80,305,906 (+)MAPPERmRatBN7.2
Rnor_6.01183,991,480 - 83,991,632NCBIRnor6.0
Rnor_5.01187,063,802 - 87,063,954UniSTSRnor5.0
RGSC_v3.41182,535,115 - 82,535,267UniSTSRGSC3.4
Celera1179,145,423 - 79,145,575UniSTS
Cytogenetic Map11q23UniSTS
RH130739  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,306,086 - 80,306,274 (+)MAPPERmRatBN7.2
Rnor_6.01183,991,813 - 83,992,000NCBIRnor6.0
Rnor_5.01187,064,135 - 87,064,322UniSTSRnor5.0
RGSC_v3.41182,535,448 - 82,535,635UniSTSRGSC3.4
Celera1179,145,756 - 79,145,943UniSTS
RH 3.4 Map11658.0UniSTS
Cytogenetic Map11q23UniSTS
RH141397  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21180,292,112 - 80,292,263 (+)MAPPERmRatBN7.2
Rnor_6.01183,977,841 - 83,977,991NCBIRnor6.0
Rnor_5.01187,050,168 - 87,050,318UniSTSRnor5.0
RGSC_v3.41182,522,116 - 82,522,266UniSTSRGSC3.4
Celera1179,131,862 - 79,132,012UniSTS
RH 3.4 Map11657.3UniSTS
Cytogenetic Map11q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 38 33 8 33 3 66 27 36 5
Low 8 19 8 11 8 8 8 8 8 5 6 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002331   ⟹   ENSRNOP00000002331
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,300,498 - 80,305,894 (+)Ensembl
Rnor_6.0 Ensembl1183,986,230 - 83,991,706 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073703   ⟹   ENSRNOP00000065358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,300,508 - 80,306,574 (+)Ensembl
Rnor_6.0 Ensembl1183,986,247 - 83,991,706 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000119074   ⟹   ENSRNOP00000095000
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1180,300,508 - 80,307,912 (+)Ensembl
RefSeq Acc Id: NM_001142363   ⟹   NP_001135835
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,893 - 93,810,369 (+)NCBI
mRatBN7.21180,300,504 - 80,305,980 (+)NCBI
Rnor_6.01183,986,230 - 83,991,706 (+)NCBI
Rnor_5.01187,058,546 - 87,064,034 (+)NCBI
RGSC_v3.41182,507,540 - 82,535,341 (+)RGD
Celera1179,140,177 - 79,145,649 (+)RGD
Sequence:
RefSeq Acc Id: NR_024535
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,893 - 93,810,369 (+)NCBI
mRatBN7.21180,300,504 - 80,305,980 (+)NCBI
Rnor_6.01183,986,230 - 83,991,706 (+)NCBI
Rnor_5.01187,058,546 - 87,064,034 (+)NCBI
RGSC_v3.41182,507,540 - 82,535,341 (+)RGD
Celera1179,140,177 - 79,145,649 (+)RGD
Sequence:
RefSeq Acc Id: XM_006248558   ⟹   XP_006248620
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,876 - 93,810,403 (+)NCBI
mRatBN7.21180,300,487 - 80,306,014 (+)NCBI
Rnor_6.01183,985,484 - 83,991,704 (+)NCBI
Rnor_5.01187,058,546 - 87,064,034 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063270330   ⟹   XP_063126400
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,880 - 93,810,403 (+)NCBI
RefSeq Acc Id: XM_063270331   ⟹   XP_063126401
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,882 - 93,810,403 (+)NCBI
RefSeq Acc Id: XM_063270332   ⟹   XP_063126402
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,859 - 93,810,403 (+)NCBI
RefSeq Acc Id: XM_063270333   ⟹   XP_063126403
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,859 - 93,810,403 (+)NCBI
RefSeq Acc Id: XM_063270334   ⟹   XP_063126404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,929 - 93,810,403 (+)NCBI
RefSeq Acc Id: XM_063270335   ⟹   XP_063126405
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81193,804,929 - 93,810,403 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001135835   ⟸   NM_001142363
- UniProtKB: A6JSA4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006248620   ⟸   XM_006248558
- Peptide Label: isoform X2
- UniProtKB: M0R7D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000002331   ⟸   ENSRNOT00000002331
RefSeq Acc Id: ENSRNOP00000065358   ⟸   ENSRNOT00000073703
RefSeq Acc Id: ENSRNOP00000095000   ⟸   ENSRNOT00000119074
RefSeq Acc Id: XP_063126402   ⟸   XM_063270332
- Peptide Label: isoform X4
- UniProtKB: Q5M7T0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126403   ⟸   XM_063270333
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GKZ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126400   ⟸   XM_063270330
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063126401   ⟸   XM_063270331
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126404   ⟸   XM_063270334
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063126405   ⟸   XM_063270335
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M8K7-F1-model_v2 AlphaFold F1M8K7 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698276
Promoter ID:EPDNEW_R8801
Type:multiple initiation site
Name:Alg3_1
Description:ALG3, alpha-1,3- mannosyltransferase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01183,986,239 - 83,986,299EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306004 AgrOrtholog
BioCyc Gene G2FUF-20741 BioCyc
BioCyc Pathway MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS [protein N-glycosylation initial phase (eukaryotic)] BioCyc
BioCyc Pathway Image MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS BioCyc
Ensembl Genes ENSRNOG00000001712 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002331 ENTREZGENE
  ENSRNOT00000002331.9 UniProtKB/TrEMBL
  ENSRNOT00000073703 ENTREZGENE
  ENSRNOT00000073703.2 UniProtKB/TrEMBL
  ENSRNOT00000119074.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7129249 IMAGE-MGC_LOAD
InterPro Glycosyltransferase_ALG3 UniProtKB/TrEMBL
KEGG Report rno:287983 UniProtKB/TrEMBL
MGC_CLONE MGC:95144 IMAGE-MGC_LOAD
NCBI Gene 287983 ENTREZGENE
PANTHER ALG3 UniProtKB/TrEMBL
  DOL-P-MAN:MAN(5)GLCNAC(2)-PP-DOL ALPHA-1,3-MANNOSYLTRANSFERASE UniProtKB/TrEMBL
Pfam ALG3 UniProtKB/TrEMBL
PhenoGen Alg3 PhenoGen
RatGTEx ENSRNOG00000001712 RatGTEx
UniProt A0A8I6GKZ1 ENTREZGENE, UniProtKB/TrEMBL
  A6JSA4 ENTREZGENE, UniProtKB/TrEMBL
  F1M8K7_RAT UniProtKB/TrEMBL
  M0R7D2 ENTREZGENE, UniProtKB/TrEMBL
  Q5M7T0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-27 Alg3  ALG3, alpha-1,3- mannosyltransferase  Alg3  asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-02-04 Alg3  asparagine-linked glycosylation 3, alpha-1,3- mannosyltransferase homolog (S. cerevisiae)  Alg3  asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-26 Alg3  asparagine-linked glycosylation 3 homolog (S. cerevisiae, alpha-1,3-mannosyltransferase)  Alg3  asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Alg3  asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase)  Alg3_predicted  asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Alg3_predicted  asparagine-linked glycosylation 3 homolog (yeast, alpha-1,3-mannosyltransferase) (predicted)      Symbol and Name status set to approved 70820 APPROVED