Grhl1 (grainyhead-like transcription factor 1) - Rat Genome Database

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Pathways
Gene: Grhl1 (grainyhead-like transcription factor 1) Rattus norvegicus
Analyze
Symbol: Grhl1
Name: grainyhead-like transcription factor 1
RGD ID: 1305735
Description: Predicted to enable several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and protein homodimerization activity. Predicted to be involved in epidermis development and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including desmosome organization; establishment of skin barrier; and regulation of keratinocyte differentiation. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Orthologous to human GRHL1 (grainyhead like transcription factor 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DNA methyltransferase 3A; grainyhead-like 1; grainyhead-like 1 (Drosophila); grainyhead-like protein 1 homolog; LOC108351211; LOC313993; uncharacterized LOC108351211
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,935,947 - 46,986,126 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl646,935,967 - 46,980,264 (+)EnsemblGRCr8
mRatBN7.2641,207,325 - 41,257,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,207,348 - 41,254,301 (+)EnsemblmRatBN7.2
Rnor_6.0643,734,837 - 43,795,757 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,743,702 - 43,794,342 (+)Ensemblrn6Rnor6.0
Rnor_5.0660,602,932 - 60,668,616 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4642,217,279 - 42,260,621 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera640,494,932 - 40,542,079 (+)NCBICelera
RGSC_v3.1642,132,033 - 42,263,747 (+)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antimonite  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chloroprene  (ISO)
choline  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
diallyl disulfide  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
dipotassium bis[mu-tartrato(4-)]diantimonate(2-) trihydrate  (ISO)
disodium selenite  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
furan  (ISO)
hydroquinone  (ISO)
inulin  (ISO)
L-methionine  (ISO)
mercury dibromide  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-nitrosodiethylamine  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
propanal  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sulfadimethoxine  (EXP)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc atom  (ISO)
zinc(0)  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12175488   PMID:18288204   PMID:21081122   PMID:24586629   PMID:29309642  


Genomics

Comparative Map Data
Grhl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8646,935,947 - 46,986,126 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl646,935,967 - 46,980,264 (+)EnsemblGRCr8
mRatBN7.2641,207,325 - 41,257,516 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl641,207,348 - 41,254,301 (+)EnsemblmRatBN7.2
Rnor_6.0643,734,837 - 43,795,757 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl643,743,702 - 43,794,342 (+)Ensemblrn6Rnor6.0
Rnor_5.0660,602,932 - 60,668,616 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4642,217,279 - 42,260,621 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera640,494,932 - 40,542,079 (+)NCBICelera
RGSC_v3.1642,132,033 - 42,263,747 (+)NCBI
Cytogenetic Map6q16NCBI
GRHL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3829,951,693 - 10,002,277 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl29,951,693 - 10,002,277 (+)Ensemblhg38GRCh38
GRCh37210,091,822 - 10,142,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36210,009,273 - 10,059,856 (+)NCBIBuild 36Build 36hg18NCBI36
Celera210,007,717 - 10,058,329 (+)NCBICelera
Cytogenetic Map2p25.1NCBI
HuRef29,942,567 - 9,993,653 (+)NCBIHuRef
CHM1_1210,021,441 - 10,071,878 (+)NCBICHM1_1
T2T-CHM13v2.029,979,623 - 10,030,385 (+)NCBIT2T-CHM13v2.0
Grhl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391224,622,234 - 24,667,390 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1224,622,282 - 24,667,390 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381224,572,232 - 24,617,391 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1224,572,283 - 24,617,391 (+)Ensemblmm10GRCm38
MGSCv371225,257,152 - 25,302,256 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361225,169,798 - 25,206,467 (+)NCBIMGSCv36mm8
Celera1226,034,221 - 26,079,315 (+)NCBICelera
Cytogenetic Map12A1.3NCBI
cM Map128.49NCBI
Grhl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554875,407,128 - 5,433,113 (+)Ensembl
ChiLan1.0NW_0049554875,407,187 - 5,432,828 (+)NCBIChiLan1.0ChiLan1.0
GRHL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212116,522,037 - 116,572,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A116,526,008 - 116,576,125 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A9,944,385 - 9,994,510 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A10,108,150 - 10,155,177 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A10,105,486 - 10,155,177 (+)EnsemblpanPan2panpan1.1
GRHL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1176,953,945 - 7,007,175 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl176,953,836 - 7,006,134 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha176,882,122 - 6,934,414 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0177,053,267 - 7,105,654 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl177,052,104 - 7,105,639 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1176,945,283 - 6,997,603 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0176,947,411 - 6,999,812 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,961,516 - 7,013,871 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Grhl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629251,444,414 - 51,492,247 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365326,199,453 - 6,247,295 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365326,199,525 - 6,247,282 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRHL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3126,463,387 - 126,511,321 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.13126,462,946 - 126,511,185 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23135,019,617 - 135,028,744 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GRHL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11497,632,494 - 97,686,257 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604514,630,186 - 14,681,247 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Grhl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248655,046,147 - 5,078,492 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248655,046,030 - 5,078,545 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Grhl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1738,186,149 - 38,229,942 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Grhl1
338 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:162
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000038519, ENSRNOT00000070985
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552962Pigfal16Plasma insulin-like growth factor 1 level QTL 169.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)6197587946975879Rat
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
1300164Rf15Renal function QTL 153.12renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)6323998948239989Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
9589129Insul24Insulin level QTL 2419.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)6197587946975879Rat
7411603Foco13Food consumption QTL 135.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)6197587946975879Rat
7411542Bw127Body weight QTL 1275.50.001body mass (VT:0001259)body weight gain (CMO:0000420)6197587946975879Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
9589048Scfw3Subcutaneous fat weight QTL 34.570.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)6197587946975879Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
2293709Bss23Bone structure and strength QTL 235.180.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)6323998948239989Rat
2293650Bss31Bone structure and strength QTL 315.050.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)6323998948239989Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
2293656Bss28Bone structure and strength QTL 286.790.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)6323998948239989Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat

Markers in Region
RH129928  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,194,276 - 41,194,460 (+)MAPPERmRatBN7.2
Rnor_6.0643,721,808 - 43,721,991NCBIRnor6.0
Rnor_5.0660,589,867 - 60,590,050UniSTSRnor5.0
RGSC_v3.4642,204,149 - 42,204,332UniSTSRGSC3.4
Celera640,481,902 - 40,482,085UniSTS
RH 3.4 Map6236.4UniSTS
Cytogenetic Map6q16UniSTS
BQ195574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,199,866 - 41,200,040 (+)MAPPERmRatBN7.2
Rnor_6.0643,727,398 - 43,727,571NCBIRnor6.0
Rnor_5.0660,595,457 - 60,595,630UniSTSRnor5.0
RGSC_v3.4642,209,739 - 42,209,912UniSTSRGSC3.4
Celera640,487,492 - 40,487,665UniSTS
RH 3.4 Map6234.8UniSTS
Cytogenetic Map6q16UniSTS
BM386731  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2641,251,251 - 41,251,435 (+)MAPPERmRatBN7.2
Rnor_6.0643,795,360 - 43,795,543NCBIRnor6.0
Rnor_5.0660,666,843 - 60,667,026UniSTSRnor5.0
RGSC_v3.4642,261,636 - 42,261,819UniSTSRGSC3.4
Celera640,538,919 - 40,539,102UniSTS
RH 3.4 Map6232.1UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 64 162 91 90 59 87 59 6 348 184 10 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_002726727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006225734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039113151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_234006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010052547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000082570   ⟹   ENSRNOP00000068887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl646,935,967 - 46,980,264 (+)Ensembl
mRatBN7.2 Ensembl641,207,348 - 41,254,301 (+)Ensembl
Rnor_6.0 Ensembl643,743,702 - 43,794,342 (+)Ensembl
RefSeq Acc Id: XM_039113151   ⟹   XP_038969079
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,948 - 46,983,090 (+)NCBI
mRatBN7.2641,207,407 - 41,254,480 (+)NCBI
RefSeq Acc Id: XM_063262748   ⟹   XP_063118818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,948 - 46,982,918 (+)NCBI
RefSeq Acc Id: XM_063262749   ⟹   XP_063118819
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,936,186 - 46,982,918 (+)NCBI
RefSeq Acc Id: XM_234006   ⟹   XP_234006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,948 - 46,982,918 (+)NCBI
mRatBN7.2641,207,407 - 41,252,740 (+)NCBI
Rnor_6.0643,734,837 - 43,795,757 (+)NCBI
Rnor_5.0660,602,932 - 60,668,616 (+)NCBI
RGSC_v3.4642,217,279 - 42,260,621 (+)RGD
Sequence:
RefSeq Acc Id: XR_010052540
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,947 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052541
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,947 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052542
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,947 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052543
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,947 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052544
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,947 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052545
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,936,184 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052546
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,935,948 - 46,986,126 (+)NCBI
RefSeq Acc Id: XR_010052547
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8646,956,311 - 46,986,126 (+)NCBI
RefSeq Acc Id: XP_234006   ⟸   XM_234006
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000068887   ⟸   ENSRNOT00000082570
RefSeq Acc Id: XP_038969079   ⟸   XM_039113151
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JTY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118818   ⟸   XM_063262748
- Peptide Label: isoform X2
- UniProtKB: A0A0G2JTY1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118819   ⟸   XM_063262749
- Peptide Label: isoform X3
- UniProtKB: A0A0G2JTY1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JTY1-F1-model_v2 AlphaFold A0A0G2JTY1 1-525 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305735 AgrOrtholog
BioCyc Gene G2FUF-38026 BioCyc
Ensembl Genes ENSRNOG00000054989 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082570 ENTREZGENE
  ENSRNOT00000082570.3 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  GRHL1/CP2_C UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
NCBI Gene 313993 ENTREZGENE
PANTHER GRAINYHEAD-LIKE PROTEIN 1 HOMOLOG UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  GRHL1_C UniProtKB/TrEMBL
PhenoGen Grhl1 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000054989 RatGTEx
UniProt A0A0G2JTY1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Grhl1  grainyhead-like transcription factor 1  LOC108351211  uncharacterized LOC108351211  Data merged from RGD:11410754 737654 PROVISIONAL
2016-08-02 LOC108351211  uncharacterized LOC108351211      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-08-11 Grhl1  grainyhead-like transcription factor 1  Grhl1  grainyhead-like 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Grhl1  grainyhead-like 1 (Drosophila)   Grhl1_predicted  grainyhead-like 1 (Drosophila) (predicted)  'predicted' is removed 2292626 APPROVED
2008-01-09 Grhl1_predicted  grainyhead-like 1 (Drosophila) (predicted)  LOC686566  similar to leader-binding protein 32 isoform 1  Data merged from RGD:1596333 1643240 APPROVED
2006-11-20 LOC686566  similar to leader-binding protein 32 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-30 Grhl1_predicted  grainyhead-like 1 (Drosophila) (predicted)  Dnmt3a_predicted  DNA methyltransferase 3A (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Dnmt3a_predicted  DNA methyltransferase 3A (predicted)      Symbol and Name status set to approved 70820 APPROVED