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Gene: C1h15orf40 (similar to human chromosome 15 open reading frame 40) Rattus norvegicus

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Symbol:

C1h15orf40 (Ensembl: C1h15orf40-ps2)

Name:

similar to human chromosome 15 open reading frame 40 (Ensembl:similar to human chromosome 15 open reading frame 40, pseudogene 2)

RGD ID:

1305713

Description:

Predicted to be active in cytoplasm. Orthologous to human C15orf40 (chromosome 15 open reading frame 40); INTERACTS WITH 1,3-dinitrobenzene; 4,4'-sulfonyldiphenol; amitrole.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC293059; LOC293059; RGD1305713; similar to RIKEN cDNA 3110040N11; UPF0235 protein C15orf40 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C15orf40 (chromosome 15 open reading frame 40)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	3110040N11Rik (RIKEN cDNA 3110040N11 gene)	RGD	RGD
Sus scrofa (pig):	C7H15orf40 (chromosome 7 C15orf40 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C29H15orf40 (chromosome 29 C15orf40 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	CUNH15orf40 (chromosome unknown C15orf40 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	C2H15orf40 (chromosome 2 C15orf40 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SRCIN1 (SRC kinase signaling inhibitor 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	3110040N11Rik (RIKEN cDNA 3110040N11 gene)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	C15orf40 (chromosome 15 open reading frame 40)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:193812	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14966	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	W01A8.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	W01A8.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c15orf40	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c15orf40	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Related Pseudogenes:

C1h15orf40-ps2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	145,135,088 - 145,144,826 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	145,126,868 - 145,141,356 (-)	Ensembl				GRCr8
mRatBN7.2	1	135,725,869 - 135,732,028 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	135,717,545 - 135,732,039 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	143,649,266 - 143,655,240 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	150,818,485 - 150,824,459 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	143,725,768 - 143,731,742 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	143,601,011 - 143,608,770 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	143,601,014 - 143,607,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	144,544,561 - 144,552,714 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	137,997,575 - 138,004,006 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	127,776,714 - 127,782,870 (-)	NCBI		Celera
RGSC_v3.1	6	136,701,437 - 136,702,966 (+)	NCBI
Cytogenetic Map	1	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3-dinitrobenzene (EXP)

4,4'-sulfonyldiphenol (EXP)

amitrole (EXP)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP)

bisphenol F (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (EXP)

dibutyl phthalate (EXP)

fipronil (EXP)

folic acid (ISO)

methimazole (EXP)

ozone (ISO)

sodium dichromate (EXP)

triphenyl phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (IBA)

mitochondrion (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334	PMID:34800366

Genomics

Comparative Map Data

C1h15orf40
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	145,135,088 - 145,144,826 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	145,126,868 - 145,141,356 (-)	Ensembl				GRCr8
mRatBN7.2	1	135,725,869 - 135,732,028 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	135,717,545 - 135,732,039 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	1	143,649,266 - 143,655,240 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	150,818,485 - 150,824,459 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	143,725,768 - 143,731,742 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	143,601,011 - 143,608,770 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	143,601,014 - 143,607,170 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	144,544,561 - 144,552,714 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	137,997,575 - 138,004,006 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	127,776,714 - 127,782,870 (-)	NCBI		Celera
RGSC_v3.1	6	136,701,437 - 136,702,966 (+)	NCBI
Cytogenetic Map	1	q31	NCBI

C15orf40
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	82,988,963 - 83,011,639 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	82,988,441 - 83,011,641 (-)	Ensembl			hg38	GRCh38
GRCh37	15	83,657,715 - 83,680,391 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	81,464,408 - 81,471,362 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	15	60,906,250 - 60,928,927 (+)	NCBI		Celera
Cytogenetic Map	15	q25.2	NCBI
HuRef	15	59,921,195 - 59,943,862 (-)	NCBI		HuRef
CHM1_1	15	83,399,327 - 83,421,992 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	15	80,853,334 - 80,875,980 (-)	NCBI		T2T-CHM13v2.0

3110040N11Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	81,430,031 - 81,439,203 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	81,431,930 - 81,439,226 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	81,780,283 - 81,789,499 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	81,782,182 - 81,789,478 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	88,927,073 - 88,934,339 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	81,655,507 - 81,662,944 (-)	NCBI		MGSCv36	mm8
Celera	7	79,193,750 - 79,200,977 (-)	NCBI		Celera
Cytogenetic Map	7	D3	NCBI
cM Map	7	45.71	NCBI

C7H15orf40
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	51,929,373 - 51,935,723 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	51,929,349 - 51,935,724 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	57,417,825 - 57,424,210 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C29H15orf40
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	29	2,641,930 - 2,652,387 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	29	2,642,542 - 2,649,741 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666059	44,443,403 - 44,450,439 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH15orf40
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624768	18,777,797 - 18,782,227 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624768	18,762,266 - 18,782,591 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C2H15orf40
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	118,486,398 - 118,491,595 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C1h15orf40
74 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	522
Count of miRNA genes:	255
Interacting mature miRNAs:	304
Transcripts:	ENSRNOT00000026405
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61442	Strs1	Sensitivity to stroke QTL 1	7.4		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	1	131179947	176179947	Rat
1578780	Cm52	Cardiac mass QTL 52	3.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	1	137611478	182611478	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	101228864	146228864	Rat
1598866	Bp287	Blood pressure QTL 287	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
1578770	Stresp23	Stress response QTL 23			kidney sympathetic nerve activity (VT:0004050)	stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)	1	132760429	191848948	Rat
631684	Bp117	Blood pressure QTL 117	8.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	120082258	165082258	Rat
9590300	Scort16	Serum corticosterone level QTL 16	4.39	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	1	112521556	157521556	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
631199	Cm23	Cardiac mass QTL 23	4.6	0.0004	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	142582336	182383862	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1598850	Bp297	Blood pressure QTL 297	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	130419227	175419227	Rat
631570	Bp94	Blood pressure QTL 94		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132889797	152403053	Rat
152025235	Bw194	Body weight QTL 194	4.86		body mass (VT:0001259)		1	132966869	252856240	Rat
61341	Bp26	Blood pressure QTL 26			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	139442053	223964440	Rat
152025232	Bw192	Body weight QTL 192	3.93		body mass (VT:0001259)		1	127329268	206393015	Rat
724521	Uae1	Urinary albumin excretion QTL 1	3.8	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	1	99645382	182701046	Rat
1358902	Bw47	Body weight QTL 47	1.67		body mass (VT:0001259)	body weight (CMO:0000012)	1	99645382	221502378	Rat
61346	Rf2	Renal disease susceptibility QTL 2	3.7		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	1	142582180	153680016	Rat
8655649	Arrd1	Age-related retinal degeneration QTL 1	4.89		retinal layer morphology trait (VT:0003727)	percentage of study population developing retinopathy during a period of time (CMO:0002453)	1	109493780	193400781	Rat
2317833	Alcrsp19	Alcohol response QTL 19	12.4	0.001	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
1300153	Bp171	Blood pressure QTL 171	3.37		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	124975316	152612788	Rat
731168	Bp154	Blood pressure QTL 154	3.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	103779152	223964440	Rat
631202	Gluco13	Glucose level QTL 13		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	1	141173126	169168317	Rat
631205	Bp196	Blood pressure QTL 196	4	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	98879955	208479939	Rat
631206	Niddm40	Non-insulin dependent diabetes mellitus QTL 40			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	1	140833106	185833106	Rat
1641897	Alcrsp1	Alcohol response QTL 1			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	1	110389869	155389869	Rat
1331751	Bp199	Blood pressure QTL 199	3.60022		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	1	116099376	191260518	Rat
2293142	Bp314	Blood pressure QTL 314			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	101594089	146594089	Rat
2293140	Bp313	Blood pressure QTL 313			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	131243790	176243790	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat
737974	Bp161	Blood pressure QTL 161		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	129182274	174182274	Rat
1641895	Bp298	Blood pressure QTL 298			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	132760429	191848948	Rat
631496	Bp97	Blood pressure QTL 97	3.08		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	115183611	176289080	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1331793	Bp200	Blood pressure QTL 200	3.71601		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	102780511	182384005	Rat
6893347	Bw98	Body weight QTL 98	0.2	0.53	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354591	Cm36	Cardiac mass QTL 36	4.1		heart left ventricle mass (VT:0007031)	calculated heart weight (CMO:0000073)	1	111949780	210707719	Rat
7421630	Bp362	Blood pressure QTL 362		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	128019551	173019551	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
61399	Tcat1	Tongue tumor resistance QTL 1	3.3		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 5 mm (CMO:0001879)	1	108680016	153680016	Rat
6893361	Bw104	Body weight QTL 104	0.59	0.27	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
724562	Rends1	Renal damage susceptibility QTL 1		0.05	kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	1	139442053	223964440	Rat
724567	Tcas6	Tongue tumor susceptibility QTL 6	6.85		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	1	102359314	153680016	Rat
738006	Anxrr14	Anxiety related response QTL 14	4	0.00035	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1558645	Bw55	Body weight QTL 55	3.2	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	1	143092939	188092939	Rat
1354615	Cm32	Cardiac mass QTL 32	5.2		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	1	111949780	210707719	Rat
634348	Bp138	Blood pressure QTL 138			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	178317588	Rat
8694370	Bw154	Body weight QTL 154	8.91	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	1	112521556	157521556	Rat
738028	Anxrr12	Anxiety related response QTL 12	4.9	0.00001	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	140048073	185048073	Rat
1354623	Rf46	Renal function QTL 46	3.8		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	1	111949780	160574007	Rat
631654	Bp107	Blood pressure QTL 107			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	135021436	180021436	Rat
631544	Bp84	Blood pressure QTL 84	5.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	191190115	Rat
152025212	Bw190	Body weight QTL 190	5.7		body mass (VT:0001259)		1	132966869	206393015	Rat
631549	Bp89	Blood pressure QTL 89	5.7		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	132760429	152404087	Rat
631548	Bp88	Blood pressure QTL 88	5	0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	140915717	185915717	Rat
61433	Cia2	Collagen induced arthritis QTL 2	5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	100345976	145345976	Rat
1358189	Cstrr1	Cold stress response QTL 1		0.0001	catecholamine amount (VT:0010543)	urine norepinephrine level (CMO:0001629)	1	132760429	191848948	Rat
1354606	Bp246	Blood pressure QTL 246	3.6		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	1	111949780	228180370	Rat

Markers in Region

RH131009

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	135,725,983 - 135,726,175 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	143,601,126 - 143,601,317	NCBI	Rnor6.0
Rnor_5.0	1	144,544,676 - 144,544,867	UniSTS	Rnor5.0
RGSC_v3.4	1	137,997,690 - 137,997,884	UniSTS	RGSC3.4
Celera	1	127,776,829 - 127,777,020	UniSTS
Cytogenetic Map	1	q31	UniSTS

RH141012

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	130,967,169 - 130,967,352 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	135,726,256 - 135,726,439 (-)	MAPPER	mRatBN7.2
mRatBN7.2	6	130,967,169 - 130,967,352 (-)	MAPPER	mRatBN7.2
mRatBN7.2	1	135,726,256 - 135,726,439 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	143,601,399 - 143,601,581	NCBI	Rnor6.0
Rnor_6.0	6	136,475,242 - 136,475,424	NCBI	Rnor6.0
Rnor_5.0	6	145,483,725 - 145,483,907	UniSTS	Rnor5.0
Rnor_5.0	1	144,544,949 - 144,545,131	UniSTS	Rnor5.0
RGSC_v3.4	6	136,696,535 - 136,696,717	UniSTS	RGSC3.4
Celera	6	128,520,510 - 128,520,692	UniSTS
Celera	1	127,777,100 - 127,777,282	UniSTS
Cytogenetic Map	1	q31	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064709	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064710	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC097241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000079643 ⟹ ENSRNOP00000070531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	135,717,545 - 135,732,039 (-)	Ensembl
Rnor_6.0 Ensembl	1	143,601,014 - 143,607,170 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098314 ⟹ ENSRNOP00000091584

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	135,725,872 - 135,732,020 (-)	Ensembl

RefSeq Acc Id:

NM_001024749 ⟹ NP_001019920

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	145,135,088 - 145,141,247 (-)	NCBI
mRatBN7.2	1	135,725,869 - 135,732,028 (-)	NCBI
Rnor_6.0	1	143,601,011 - 143,607,170 (-)	NCBI
Rnor_5.0	1	144,544,561 - 144,552,714 (-)	NCBI
RGSC_v3.4	1	137,997,575 - 138,004,006 (-)	RGD
Celera	1	127,776,714 - 127,782,870 (-)	RGD

Sequence:

show sequence

GCTGCCGCCTTCCGTGGCGCCTGCGAAGTTGTGATGCTGAAGCTCCTTGTAGGTCGCTGTGCTT
GGCCTCTACTAGACTCCTGTGTGGTTCCACAATGCCTAAGAAAGCCGGTGCAACAAGCAAGGGT
AAAAACCAAACCAAGGAACCAGAGACACCACCTCCCCCTACAGGGCCTGTAGCAACTGATTCTA
AAGGCTTTGTCACCATAGCCATCCATGCCAAACCCGGCTCCAAACAGAATGCTGTGACAGATCT
GAACACCGAGGCGGTCGGCGTGGCCATCGCGGCACCTCCGTCTGAGGGAGAGGCCAATGCGGAG
CTCTGTCGGTACCTTTCCAAGGTCTTGGACCTCAGGAAGAGTGACGTGGTTCTGGACAAGGGCG
GTAAATCTCGGGAAAAGGTGGTGAAGCTCTTGGCCTCTACAACTCCAGAGGAGGTCTTGGAGAA
GCTGAGAACAGAAGCTGAAAAAAAATAAAGGCGAGAAATGGCGTGTACTTCCTTGTGGGCTCTC
ATGAGAGTAGCGGGGCCACGCAGGAAAATGTACATCGGTGCCTGGCCATGGAGAGAGGAATACA
TAGATGAAGTCAGACTAAATGAAAGGAGAAAATATAAATCTACAGACTCTCAAATCCCTCACTG
TGGGAGCTGGGGAGACAGCTCAGTGGCGAAGAGCGTTTGCCGCTCTTCCAGGGATTCGGCTCAG
CTCCCAGCACTGACACTGGAGGGCTCACACAAACTCCGGTTCCAGGATGTCGCCATTCTTTTCC
TGGCCCCTGAGGCCACTGCAGACCTGTAGTTCATACATGTGCATTCCAGGCACACACACTAAGT
AAACCTTTAAATCCCTGAGTGCAGACAGCCTGGAATATATCACTCTAACTTCATGGGATTACAA
CGGACCAGCTACTGTCCACGATGGAGCTCCTGATCTGCAGGCATTGGGAGATGAGCTGAAGATC
ACCGCACAGAGGATGACGGGAAACCAACTCCCCGGACTCCAAGTGAAGTGCTTCTAGCCTCGTA
GCTCCCCACAGTGTTTCTGGAGTCCTGGGGTCTTCTGATCCTGTTTACAACTGGGAAAACCTTT
TGTACTGCTTCTATTTTAAGGTTTTTTTAAATGCAAAAGTGTTTACTTTTTATCTTCTTTTTTT
TTTTTTTTTTTTTAATTTTTATTTATTTGAGTACACACTAGCTGTCTTCAGATACACCAGAAGA
GGGCAGACCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGTCCTC
TGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATGTCTCCAGCCCTACTTTTTATCTCCTAA
TGATCATATAGAACATTTTGTGGAAAAGTAAATAATCATGGAGACGTGTAACTTATTGTCAGTT
ACTTTCAGAACCTTGTAAACTTTCAAATCTAGAAGTTCTTAGGAGTCTCCAAAGATCTTAAAAG
AGTCAAGAGGTGTCTGGAGCAATGACCAGCAGTTAAGAGTGCTTACGCTCTTGGAGAGGACATG
AGTTCAATTCCCAGCAACCCAACATGGAATGACTCACAACTGCCTGTAACTCCAGTTTCAAGAG
ATCCAATGCCTCTGGTCCGAGGGCACCCACACCCATGTATGCATACACAGACACATACCTGCAG
AGATAGAGACAGACACATACATAATTGAAAATAACTTAACAAATAAAAAAAAAATGATAAAGAT
GTCCTGGAAGTTCTTCTCATTGTTTGTTAAGCCCATCAGAAATCAGTTGGGAATGTTTCCTGAT
GTGCATGAAGCCTTGGGTTCAGTCCCCAGCCCTGCGTAAATTGGGTGTGGTGTGGTATACTCTG
AGTCCCAGCACTCTGGAGCTGAGGGCAGGAGGATGAGAAGTTCAAGGTTCCTTTACATAATAGA
GTCCCAGGTCAGCTCGGGACACGTGCACCTATATATCTAGATCTGTATAGATAACGTGTATATG
TTGCTCAGTAACACAAGTATGTGTATATATAGCTGGGAAGATAATAAACATATATGTTTGACCT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG

hide sequence

RefSeq Acc Id:

NM_001401382 ⟹ NP_001388311

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	145,135,088 - 145,141,247 (-)	NCBI
mRatBN7.2	1	135,725,869 - 135,732,028 (-)	NCBI

RefSeq Acc Id:

XR_010064709

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	145,135,088 - 145,144,826 (-)	NCBI

RefSeq Acc Id:

XR_010064710

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	145,135,088 - 145,144,826 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019920	(Get FASTA)	NCBI Sequence Viewer
	NP_001388311	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH94529	(Get FASTA)	NCBI Sequence Viewer
	EDM08704	(Get FASTA)	NCBI Sequence Viewer
	EDM08705	(Get FASTA)	NCBI Sequence Viewer
	EDM08706	(Get FASTA)	NCBI Sequence Viewer
	EDM08707	(Get FASTA)	NCBI Sequence Viewer
	EDM08708	(Get FASTA)	NCBI Sequence Viewer
	EDM08709	(Get FASTA)	NCBI Sequence Viewer
	EDM08710	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000091584
GenBank Protein	Q505I4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019920 ⟸ NM_001024749
- Peptide Label:	isoform 1
- UniProtKB:	Q505I4 (UniProtKB/Swiss-Prot), A6JCI3 (UniProtKB/TrEMBL), A6JCI1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPKKAGATSKGKNQTKEPETPPPPTGPVATDSKGFVTIAIHAKPGSKQNAVTDLNTEAVGVAIA APPSEGEANAELCRYLSKVLDLRKSDVVLDKGGKSREKVVKLLASTTPEEVLEKLRTEAEKK hide sequence

Ensembl Acc Id:

ENSRNOP00000070531 ⟸ ENSRNOT00000079643

Ensembl Acc Id:

ENSRNOP00000091584 ⟸ ENSRNOT00000098314

RefSeq Acc Id:	NP_001388311 ⟸ NM_001401382
- Peptide Label:	isoform 2
- UniProtKB:	A0A8L2R2L7 (UniProtKB/TrEMBL), A0A8I6AFW3 (UniProtKB/TrEMBL), A6JCH9 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q505I4-F1-model_v2	AlphaFold	Q505I4	1-126	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13690157

Promoter ID:

EPDNEW_R682

Type:

initiation region

Name:

LOC100363116_1

Description:

hypothetical protein LOC100363116

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	1	143,607,172 - 143,607,232	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305713	AgrOrtholog
BioCyc Gene	G2FUF-58689	BioCyc
Ensembl Genes	ENSRNOG00000052273	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000098314	ENTREZGENE
Gene3D-CATH	3.30.1200.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7320095	IMAGE-MGC_LOAD
InterPro	DUF167	UniProtKB/Swiss-Prot
	YggU-like_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:293059	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105635	IMAGE-MGC_LOAD
NCBI Gene	293059	ENTREZGENE
PANTHER	PTHR13420	UniProtKB/Swiss-Prot
	UPF0235 PROTEIN C15ORF40	UniProtKB/Swiss-Prot
Pfam	DUF167	UniProtKB/Swiss-Prot
PhenoGen	C1h15orf40	PhenoGen
RatGTEx	ENSRNOG00000052273	RatGTEx
SMART	DUF167	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF69786	UniProtKB/Swiss-Prot
UniProt	A0A8I6AFW3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8L2R2L7	ENTREZGENE, UniProtKB/TrEMBL
	A6JCH9	ENTREZGENE, UniProtKB/TrEMBL
	A6JCI1	ENTREZGENE, UniProtKB/TrEMBL
	A6JCI3	ENTREZGENE, UniProtKB/TrEMBL
	CO040_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-05-26	C1h15orf40	similar to human chromosome 15 open reading frame 40	RGD1305713	similar to RIKEN cDNA 3110040N11	Name and Symbol changed	629549	APPROVED
2005-12-06	RGD1305713	similar to RIKEN cDNA 3110040N11	RGD1305713_predicted	similar to RIKEN cDNA 3110040N11 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1305713_predicted	similar to RIKEN cDNA 3110040N11 (predicted)	LOC293059_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC293059_predicted	similar to RIKEN cDNA 3110040N11 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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