Lmo4 (LIM domain only 4) - Rat Genome Database

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Gene: Lmo4 (LIM domain only 4) Rattus norvegicus
Analyze
Symbol: Lmo4
Name: LIM domain only 4
RGD ID: 1305670
Description: Predicted to enable DNA-binding transcription factor binding activity and transcription corepressor activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II; neuron differentiation; and regulation of cell migration. Predicted to act upstream of or within several processes, including cell differentiation in spinal cord; neural tube closure; and thymus development. Predicted to be located in cell leading edge and nucleus. Predicted to be part of RNA polymerase II transcription regulator complex. Orthologous to human LMO4 (LIM domain only 4); PARTICIPATES IN interleukin-6 signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LIM domain transcription factor LMO4; LOC362051; MGC105593
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82235,924,574 - 235,941,609 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2235,924,403 - 235,941,275 (-)EnsemblGRCr8
mRatBN7.22233,264,180 - 233,280,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2241,048,779 - 241,065,526 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02238,943,176 - 238,959,923 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02233,806,381 - 233,823,133 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02250,218,635 - 250,235,435 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,218,641 - 250,241,673 (-)Ensemblrn6Rnor6.0
Rnor_5.02268,752,222 - 268,769,170 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42242,498,074 - 242,515,160 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2225,256,943 - 225,273,636 (-)NCBICelera
RGSC_v3.12242,484,813 - 242,501,899 (+)NCBI
Cytogenetic Map2q44NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View
anencephaly  (ISS)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chloropicrin  (ISO)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
deoxycholic acid  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
diclofenac  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fluoranthene  (ISO)
folic acid  (ISO)
gentamycin  (EXP)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
phorone  (EXP)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
temozolomide  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
triadimefon  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
XL147  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9860983   PMID:12477932   PMID:14966285   PMID:15691703   PMID:16949565   PMID:17524392   PMID:17991461   PMID:19323994   PMID:19666821   PMID:20549734   PMID:25501662   PMID:25882817  


Genomics

Comparative Map Data
Lmo4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82235,924,574 - 235,941,609 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2235,924,403 - 235,941,275 (-)EnsemblGRCr8
mRatBN7.22233,264,180 - 233,280,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2241,048,779 - 241,065,526 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02238,943,176 - 238,959,923 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02233,806,381 - 233,823,133 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02250,218,635 - 250,235,435 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2250,218,641 - 250,241,673 (-)Ensemblrn6Rnor6.0
Rnor_5.02268,752,222 - 268,769,170 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42242,498,074 - 242,515,160 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2225,256,943 - 225,273,636 (-)NCBICelera
RGSC_v3.12242,484,813 - 242,501,899 (+)NCBI
Cytogenetic Map2q44NCBI
LMO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38187,328,880 - 87,348,923 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl187,328,428 - 87,348,923 (+)Ensemblhg38GRCh38
GRCh37187,794,563 - 87,814,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36187,566,739 - 87,583,851 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34187,506,171 - 87,523,283NCBI
Celera186,039,830 - 86,060,286 (+)NCBICelera
Cytogenetic Map1p22.3NCBI
HuRef185,907,757 - 85,928,201 (+)NCBIHuRef
CHM1_1187,909,001 - 87,929,485 (+)NCBICHM1_1
T2T-CHM13v2.0187,171,579 - 87,191,625 (+)NCBIT2T-CHM13v2.0
Lmo4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393143,894,291 - 143,911,016 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3143,894,291 - 143,910,981 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm383144,188,530 - 144,205,255 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3144,188,530 - 144,205,220 (-)Ensemblmm10GRCm38
MGSCv373143,851,494 - 143,868,219 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv363144,125,916 - 144,142,357 (-)NCBIMGSCv36mm8
Celera3150,625,911 - 150,643,008 (-)NCBICelera
Cytogenetic Map3H2NCBI
cM Map368.61NCBI
Lmo4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554236,849,555 - 6,866,137 (-)Ensembl
ChiLan1.0NW_0049554236,849,542 - 6,865,928 (-)NCBIChiLan1.0ChiLan1.0
LMO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21139,625,326 - 139,642,026 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11138,780,899 - 138,797,699 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01119,848,323 - 119,867,007 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1188,698,962 - 88,718,760 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl188,698,962 - 88,718,760 (+)EnsemblpanPan2panpan1.1
LMO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1660,892,478 - 60,909,910 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl660,727,270 - 60,941,058 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha663,606,359 - 63,623,679 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0661,432,227 - 61,449,629 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl661,430,188 - 61,446,484 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1660,967,016 - 60,984,353 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0660,923,303 - 60,940,624 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0661,421,332 - 61,438,711 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lmo4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505897,881,311 - 97,900,916 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367321,541,515 - 1,555,735 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367321,541,511 - 1,557,845 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LMO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14128,894,113 - 128,910,648 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24141,341,687 - 141,354,291 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LMO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12046,105,755 - 46,126,291 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2046,105,699 - 46,126,399 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603371,708,190 - 71,726,923 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lmo4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474210,207,899 - 10,225,209 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474210,207,901 - 10,224,807 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lmo4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1316,537,758 - 16,555,078 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lmo4
75 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:61
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000067502
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631501Bp101Blood pressure QTL 1012.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1598813Memor9Memory QTL 92.7exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2202029709236904960Rat
2307174Activ3Activity QTL 34.830.000058locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)2210956252251712708Rat
8693697Alc36Alcohol consumption QTL 3620.592drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2219814164239320906Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
1298075Scl17Serum cholesterol level QTL 173.4blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)2214404877251712708Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
1300126Bp175Blood pressure QTL 1753.46arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2204795005249795005Rat
7207484Bss108Bone structure and strength QTL 1085.3femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)2214404877251712708Rat
2313073Bmd75Bone mineral density QTL 754.10.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)2218051934251712708Rat
61398Bp50Blood pressure QTL 504.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2192287802237287802Rat
7207482Bss107Bone structure and strength QTL 1077femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)2214404877251712708Rat
2317752Glom23Glomerulus QTL 233.6urine protein amount (VT:0005160)urine protein level (CMO:0000591)2196140964251540988Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2205135267250135267Rat
1549836Bss2Bone structure and strength QTL 27.5femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)2214404877251712708Rat
70175BpQTLCluster3Blood pressure QTL cluster 34.128arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)2205135267250135267Rat
1331767Hrtrt12Heart rate QTL 123.373heart pumping trait (VT:2000009)heart rate (CMO:0000002)2221088977243501206Rat
2293833Kiddil8Kidney dilation QTL 82.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1598835Anxrr18Anxiety related response QTL 182.98body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)2203664411248664411Rat
7207490Bss111Bone structure and strength QTL 1116.4femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)2214404877251712708Rat
8693622Alc26Alcohol consumption QTL 262.40.667drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)2223810546243965570Rat
61366Iddm3Insulin dependent diabetes mellitus QTL 34.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2192287802237287802Rat
2293844Kiddil7Kidney dilation QTL 73.5kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)2220274283249795005Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000067502   ⟹   ENSRNOP00000062436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2235,924,609 - 235,941,275 (-)Ensembl
mRatBN7.2 Ensembl2233,264,182 - 233,280,880 (-)Ensembl
Rnor_6.0 Ensembl2250,218,670 - 250,241,673 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077221   ⟹   ENSRNOP00000074440
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,218,641 - 250,241,590 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082132   ⟹   ENSRNOP00000074824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,222,864 - 250,232,295 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000088618   ⟹   ENSRNOP00000075489
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl2250,218,670 - 250,235,435 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148410   ⟹   ENSRNOP00000104193
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2235,924,403 - 235,938,468 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000163257   ⟹   ENSRNOP00000102463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2235,928,990 - 235,941,275 (-)Ensembl
RefSeq Acc Id: NM_001009708   ⟹   NP_001009708
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,924,574 - 235,941,275 (-)NCBI
mRatBN7.22233,264,180 - 233,280,881 (-)NCBI
Rnor_6.02250,218,635 - 250,235,435 (-)NCBI
Rnor_5.02268,752,222 - 268,769,170 (-)NCBI
RGSC_v3.42242,498,074 - 242,515,160 (+)RGD
Celera2225,256,943 - 225,273,636 (-)RGD
Sequence:
RefSeq Acc Id: XM_006233438   ⟹   XP_006233500
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,924,581 - 235,938,485 (-)NCBI
mRatBN7.22233,264,180 - 233,278,095 (-)NCBI
Rnor_6.02250,218,635 - 250,232,616 (-)NCBI
Rnor_5.02268,752,222 - 268,769,170 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063282227   ⟹   XP_063138297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,929,713 - 235,941,609 (-)NCBI
RefSeq Acc Id: XM_063282228   ⟹   XP_063138298
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82235,929,713 - 235,938,487 (-)NCBI
RefSeq Acc Id: NP_001009708   ⟸   NM_001009708
- UniProtKB: Q5PPG8 (UniProtKB/TrEMBL),   F7EU01 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006233500   ⟸   XM_006233438
- Peptide Label: isoform X2
- UniProtKB: Q5PPG8 (UniProtKB/TrEMBL),   F7EU01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074440   ⟸   ENSRNOT00000077221
Ensembl Acc Id: ENSRNOP00000062436   ⟸   ENSRNOT00000067502
Ensembl Acc Id: ENSRNOP00000074824   ⟸   ENSRNOT00000082132
Ensembl Acc Id: ENSRNOP00000075489   ⟸   ENSRNOT00000088618
RefSeq Acc Id: XP_063138297   ⟸   XM_063282227
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063138298   ⟸   XM_063282228
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000102463   ⟸   ENSRNOT00000163257
Ensembl Acc Id: ENSRNOP00000104193   ⟸   ENSRNOT00000148410
Protein Domains
LIM zinc-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K919-F1-model_v2 AlphaFold A0A0G2K919 1-165 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691798
Promoter ID:EPDNEW_R2322
Type:multiple initiation site
Name:Lmo4_2
Description:LIM domain only 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2323  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02250,235,438 - 250,235,498EPDNEW
RGD ID:13691818
Promoter ID:EPDNEW_R2323
Type:multiple initiation site
Name:Lmo4_1
Description:LIM domain only 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R2322  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02250,241,676 - 250,241,736EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305670 AgrOrtholog
BioCyc Gene G2FUF-50954 BioCyc
Ensembl Genes ENSRNOG00000009205 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067502 ENTREZGENE
  ENSRNOT00000067502.4 UniProtKB/TrEMBL
  ENSRNOT00000148410.1 UniProtKB/TrEMBL
  ENSRNOT00000163257 ENTREZGENE
  ENSRNOT00000163257.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine Rich Protein UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7314152 IMAGE-MGC_LOAD
InterPro LMO_RBTN_TF UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
KEGG Report rno:362051 UniProtKB/TrEMBL
MGC_CLONE MGC:105593 IMAGE-MGC_LOAD
NCBI Gene 362051 ENTREZGENE
PANTHER LD11652P UniProtKB/TrEMBL
  LIM DOMAIN TRANSCRIPTION FACTOR LMO4 UniProtKB/TrEMBL
Pfam LIM UniProtKB/TrEMBL
PhenoGen Lmo4 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000009205 RatGTEx
SMART LIM UniProtKB/TrEMBL
Superfamily-SCOP Glucocorticoid receptor-like (DNA-binding domain) UniProtKB/TrEMBL
UniProt A0ABK0LKZ0_RAT UniProtKB/TrEMBL
  A0ABK0LM80_RAT UniProtKB/TrEMBL
  A6HW89_RAT UniProtKB/TrEMBL
  F7EU01 ENTREZGENE, UniProtKB/TrEMBL
  Q5PPG8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Lmo4  LIM domain only 4  Lmo4_predicted  LIM domain only 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lmo4_predicted  LIM domain only 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED