Symbol:
Calml3
Name:
calmodulin-like 3
RGD ID:
1305499
Description:
Predicted to enable calcium ion binding activity. Predicted to be involved in establishment of localization in cell. Predicted to be located in distal axon. Predicted to be active in centrosome; cytoplasm; and myelin sheath. Orthologous to human CALML3 (calmodulin like 3); PARTICIPATES IN Alzheimer's disease pathway; calcium/calcium-mediated signaling pathway; glioma pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine.
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
calmodulin-like protein 3; LOC307100
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
CALML3 (calmodulin like 3) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):
Calml3 (calmodulin-like 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
LOC102023269 (calmodulin-like protein 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
CALML3 (calmodulin like 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
LOC102153034 (calmodulin-like protein 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
LOC101976513 (calmodulin-like protein 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
CALML3 (calmodulin like 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Calml3 (calmodulin like 3) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
CALM2 (calmodulin 2) HGNC
OrthoDB
Alliance orthologs 3
Homo sapiens (human):
CALML3 (calmodulin like 3)
Alliance
DIOPT (Ensembl Compara|HGNC|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Calml3 (calmodulin-like 3)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):
CMD1
Alliance
DIOPT (InParanoid|OMA|OrthoInspector|PANTHER|SonicParanoid)
Caenorhabditis elegans (roundworm):
cal-1
Alliance
DIOPT (Ensembl Compara|PANTHER)
Caenorhabditis elegans (roundworm):
cal-3
Alliance
DIOPT (Ensembl Compara|PANTHER)
Caenorhabditis elegans (roundworm):
pat-10
Alliance
DIOPT (Ensembl Compara|PANTHER)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 71,329,438 - 71,333,068 (+) NCBI GRCr8 mRatBN7.2 17 66,419,844 - 66,423,083 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 66,419,882 - 66,423,175 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 69,902,584 - 69,903,956 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 73,731,395 - 73,732,767 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 67,774,410 - 67,775,782 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 70,070,458 - 70,073,697 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 70,072,156 - 70,073,530 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 71,774,029 - 71,777,255 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 77,594,514 - 77,595,889 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 17 77,605,346 - 77,606,721 (+) NCBI Celera 17 65,927,353 - 65,928,728 (+) NCBI Celera Cytogenetic Map 17 q12.2 NCBI
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Only show annotations with direct experimental evidence (0 objects hidden)
Calml3 Rat 1,2-dichloroethane decreases expression ISO Calml3 (Mus musculus) 6480464 ethylene dichloride results in decreased expression of CALML3 mRNA CTD PMID:28960355 Calml3 Rat 1,3-dinitrobenzene increases expression EXP 6480464 3-dinitrobenzene results in increased expression of CALML3 mRNA CTD PMID:21983209 Calml3 Rat 17beta-estradiol increases expression ISO Calml3 (Mus musculus) 6480464 Estradiol results in increased expression of CALML3 mRNA CTD PMID:19484750 Calml3 Rat 17beta-estradiol multiple interactions ISO CALML3 (Homo sapiens) 6480464 [Estradiol co-treated with TGFB1 protein] results in decreased expression of CALML3 mRNA CTD PMID:30165855 Calml3 Rat 2,2',4,4'-Tetrabromodiphenyl ether decreases expression EXP 6480464 2 more ... CTD PMID:27291303 Calml3 Rat 2,3,7,8-tetrachlorodibenzodioxine increases expression ISO Calml3 (Mus musculus) 6480464 Tetrachlorodibenzodioxin results in increased expression of CALML3 mRNA CTD PMID:17942748 Calml3 Rat 2,3,7,8-tetrachlorodibenzodioxine decreases expression EXP 6480464 Tetrachlorodibenzodioxin results in decreased expression of CALML3 mRNA CTD PMID:33387578 Calml3 Rat 2-palmitoylglycerol increases expression ISO CALML3 (Homo sapiens) 6480464 2-palmitoylglycerol results in increased expression of CALML3 mRNA CTD PMID:37199045 Calml3 Rat acetamide decreases expression EXP 6480464 acetamide results in decreased expression of CALML3 mRNA CTD PMID:31881176 Calml3 Rat amphetamine increases expression EXP 6480464 Amphetamine results in increased expression of CALML3 mRNA CTD PMID:30779732 Calml3 Rat arsane multiple interactions ISO CALML3 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALML3 mRNA CTD PMID:32525701 Calml3 Rat arsenic atom multiple interactions ISO CALML3 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALML3 mRNA CTD PMID:32525701 Calml3 Rat arsenite(3-) increases methylation ISO CALML3 (Homo sapiens) 6480464 arsenite results in increased methylation of CALML3 promoter CTD PMID:23974009 Calml3 Rat benzene increases expression ISO Calml3 (Mus musculus) 6480464 Benzene results in increased expression of CALML3 mRNA CTD PMID:34624356 Calml3 Rat benzo[a]pyrene increases methylation ISO CALML3 (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of CALML3 exon and Benzo(a)pyrene results in increased methylation of CALML3 promoter CTD PMID:27901495 Calml3 Rat benzo[a]pyrene affects methylation ISO CALML3 (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of CALML3 3' UTR CTD PMID:27901495 Calml3 Rat beta-lapachone decreases expression ISO CALML3 (Homo sapiens) 6480464 beta-lapachone results in decreased expression of CALML3 mRNA CTD PMID:38218311 Calml3 Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of CALML3 mRNA CTD PMID:25181051 Calml3 Rat bisphenol A increases expression EXP 6480464 bisphenol A results in increased expression of CALML3 mRNA CTD PMID:36779543 Calml3 Rat bisphenol A increases expression ISO Calml3 (Mus musculus) 6480464 bisphenol A results in increased expression of CALML3 mRNA CTD PMID:32156529 Calml3 Rat bleomycin A2 decreases expression EXP 6480464 Bleomycin results in decreased expression of CALML3 protein CTD PMID:25933445 Calml3 Rat bromobenzene increases expression EXP 6480464 bromobenzene results in increased expression of CALML3 mRNA CTD PMID:32479839 Calml3 Rat C60 fullerene decreases expression EXP 6480464 fullerene C60 results in decreased expression of CALML3 mRNA CTD PMID:19167457 Calml3 Rat cadmium atom multiple interactions ISO CALML3 (Homo sapiens) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CALML3 mRNA CTD PMID:29741670 Calml3 Rat cadmium dichloride multiple interactions ISO CALML3 (Homo sapiens) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of CALML3 mRNA CTD PMID:29741670 Calml3 Rat calcitriol increases expression ISO CALML3 (Homo sapiens) 6480464 Calcitriol results in increased expression of CALML3 mRNA CTD PMID:26485663 Calml3 Rat carbon nanotube affects expression ISO Calml3 (Mus musculus) 6480464 Nanotubes more ... CTD PMID:25554681 Calml3 Rat diclofenac increases expression EXP 6480464 Diclofenac results in increased expression of CALML3 mRNA CTD PMID:30723492 Calml3 Rat diuron increases expression EXP 6480464 Diuron results in increased expression of CALML3 mRNA CTD PMID:21551480 Calml3 Rat gentamycin decreases expression EXP 6480464 Gentamicins results in decreased expression of CALML3 mRNA CTD PMID:33387578 Calml3 Rat hydroquinone decreases expression ISO CALML3 (Homo sapiens) 6480464 hydroquinone results in decreased expression of CALML3 mRNA CTD PMID:31256213 Calml3 Rat isotretinoin decreases expression ISO CALML3 (Homo sapiens) 6480464 Isotretinoin results in decreased expression of CALML3 mRNA CTD PMID:20436886 Calml3 Rat lead diacetate increases expression EXP 6480464 lead acetate results in increased expression of CALML3 mRNA CTD PMID:11578147 Calml3 Rat Monobutylphthalate increases expression EXP 6480464 monobutyl phthalate results in increased expression of CALML3 mRNA CTD PMID:29162477 Calml3 Rat ozone decreases expression ISO Calml3 (Mus musculus) 6480464 Ozone results in decreased expression of CALML3 mRNA CTD PMID:31626304 Calml3 Rat ozone multiple interactions ISO Calml3 (Mus musculus) 6480464 [Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of CALML3 mRNA and [Air Pollutants results in increased abundance of Ozone] which results in decreased expression of CALML3 mRNA CTD PMID:34911549 Calml3 Rat paracetamol increases secretion ISO Calml3 (Mus musculus) 6480464 Acetaminophen results in increased secretion of CALML3 protein CTD PMID:24038040 Calml3 Rat paracetamol decreases expression EXP 6480464 Acetaminophen results in decreased expression of CALML3 mRNA CTD PMID:33387578 Calml3 Rat simvastatin increases expression ISO CALML3 (Homo sapiens) 6480464 Simvastatin results in increased expression of CALML3 mRNA CTD PMID:17428261 Calml3 Rat sodium arsenate multiple interactions ISO CALML3 (Homo sapiens) 6480464 [sodium arsenate results in increased abundance of Arsenic] which results in decreased expression of CALML3 mRNA CTD PMID:32525701 Calml3 Rat sodium arsenite decreases expression ISO Calml3 (Mus musculus) 6480464 sodium arsenite results in decreased expression of CALML3 mRNA CTD PMID:37682722 Calml3 Rat sodium fluoride decreases expression ISO Calml3 (Mus musculus) 6480464 Sodium Fluoride results in decreased expression of CALML3 protein CTD PMID:28918527 Calml3 Rat sulforaphane increases expression ISO Calml3 (Mus musculus) 6480464 sulforaphane results in increased expression of CALML3 mRNA CTD PMID:30529165 Calml3 Rat titanium dioxide decreases expression ISO Calml3 (Mus musculus) 6480464 titanium dioxide results in decreased expression of CALML3 mRNA CTD PMID:23557971 Calml3 Rat trichloroethene decreases expression EXP 6480464 Trichloroethylene results in decreased expression of CALML3 mRNA CTD PMID:33387578 Calml3 Rat valproic acid increases methylation ISO CALML3 (Homo sapiens) 6480464 Valproic Acid results in increased methylation of CALML3 gene CTD PMID:29154799
Imported Annotations - KEGG (archival)
1,2-dichloroethane (ISO) 1,3-dinitrobenzene (EXP) 17beta-estradiol (ISO) 2,2',4,4'-Tetrabromodiphenyl ether (EXP) 2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO) 2-palmitoylglycerol (ISO) acetamide (EXP) amphetamine (EXP) arsane (ISO) arsenic atom (ISO) arsenite(3-) (ISO) benzene (ISO) benzo[a]pyrene (ISO) beta-lapachone (ISO) bisphenol A (EXP,ISO) bleomycin A2 (EXP) bromobenzene (EXP) C60 fullerene (EXP) cadmium atom (ISO) cadmium dichloride (ISO) calcitriol (ISO) carbon nanotube (ISO) diclofenac (EXP) diuron (EXP) gentamycin (EXP) hydroquinone (ISO) isotretinoin (ISO) lead diacetate (EXP) Monobutylphthalate (EXP) ozone (ISO) paracetamol (EXP,ISO) simvastatin (ISO) sodium arsenate (ISO) sodium arsenite (ISO) sodium fluoride (ISO) sulforaphane (ISO) titanium dioxide (ISO) trichloroethene (EXP) valproic acid (ISO)
Calml3 Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 17 71,329,438 - 71,333,068 (+) NCBI GRCr8 mRatBN7.2 17 66,419,844 - 66,423,083 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 17 66,419,882 - 66,423,175 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 17 69,902,584 - 69,903,956 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 17 73,731,395 - 73,732,767 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 17 67,774,410 - 67,775,782 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 17 70,070,458 - 70,073,697 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 17 70,072,156 - 70,073,530 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 17 71,774,029 - 71,777,255 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 17 77,594,514 - 77,595,889 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 17 77,605,346 - 77,606,721 (+) NCBI Celera 17 65,927,353 - 65,928,728 (+) NCBI Celera Cytogenetic Map 17 q12.2 NCBI
CALML3 Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 10 5,524,961 - 5,526,771 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 10 5,524,961 - 5,526,771 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 10 5,566,924 - 5,568,734 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 10 5,556,924 - 5,558,225 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 10 5,556,923 - 5,558,225 NCBI Celera 10 5,498,075 - 5,499,376 (+) NCBI Celera Cytogenetic Map 10 p15.1 NCBI HuRef 10 5,496,886 - 5,498,187 (+) NCBI HuRef CHM1_1 10 5,566,804 - 5,568,105 (+) NCBI CHM1_1 T2T-CHM13v2.0 10 5,528,229 - 5,530,040 (+) NCBI T2T-CHM13v2.0
Calml3 Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 13 3,852,893 - 3,854,318 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 13 3,852,896 - 3,854,316 (-) Ensembl GRCm39 Ensembl GRCm38 13 3,802,893 - 3,804,318 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 13 3,802,896 - 3,804,316 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 13 3,802,139 - 3,803,564 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 13 3,802,141 - 3,803,562 (-) NCBI MGSCv36 mm8 Celera 13 3,786,628 - 3,788,053 (-) NCBI Celera Cytogenetic Map 13 A1 NCBI cM Map 13 2.13 NCBI
LOC102023269 Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955421 22,214,339 - 22,219,715 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955421 22,205,476 - 22,219,715 (+) NCBI ChiLan1.0 ChiLan1.0
CALML3 Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 8 18,077,300 - 18,079,428 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 10 18,082,644 - 18,084,751 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 10 5,565,223 - 5,567,471 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 10 5,550,835 - 5,553,087 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 10 5,551,906 - 5,552,355 (+) Ensembl panpan1.1 panPan2
LOC102153034 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 2 30,410,830 - 30,411,981 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 2 27,440,705 - 27,441,958 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 2 30,791,914 - 30,793,167 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 2 30,792,586 - 30,793,035 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 2 27,888,217 - 27,889,574 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 2 28,725,362 - 28,726,615 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 2 29,443,053 - 29,444,306 (-) NCBI UU_Cfam_GSD_1.0
LOC101976513 Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409344 32,811,313 - 32,812,782 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936484 8,977,252 - 8,977,701 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936484 8,976,512 - 8,977,792 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
CALML3 Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 9 5,634,739 - 5,636,634 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 9 5,635,456 - 5,635,905 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666051 10,890,285 - 10,892,540 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Calml3
.
Predicted Target Of
Count of predictions: 216 Count of miRNA genes: 126 Interacting mature miRNAs: 142 Transcripts: ENSRNOT00000046667 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction
1354581 Bp247 Blood pressure QTL 247 4.5 arterial blood pressure trait (VT:2000000) pulse pressure (CMO:0000292) 17 1 69599340 Rat 1358295 Aocep1 Aortic cell protein QTL 1 6.1 7e-07 thoracic aorta cellular protein amount (VT:0010598) aortic cell percentage 17 40990005 85990005 Rat 70210 Cm15 Cardiac mass QTL 15 6.5 heart right ventricle mass (VT:0007033) heart right ventricle wet weight (CMO:0000072) 17 57246723 70156904 Rat 152023626 Bp403 Blood pressure QTL 403 3.86 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 7411575 Bw140 Body weight QTL 140 30.2 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 17 48560935 86533673 Rat 2301412 Kidm40 Kidney mass QTL 40 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 37479847 82479847 Rat 631502 Cm26 Cardiac mass QTL 26 3.71 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 17 65703580 81153923 Rat 1354588 Bvd4 Brain ventricular dilatation QTL 4 5.31 0.001 brain ventricle morphology trait (VT:0000822) hydrocephalus severity score (CMO:0001881) 17 53498828 82479847 Rat 7411577 Bw141 Body weight QTL 141 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 17 62619516 86533673 Rat 9590107 Sffal7 Serum free fatty acids level QTL 7 4.81 0.001 blood free fatty acid amount (VT:0001553) plasma free fatty acids level (CMO:0000546) 17 28409147 73409147 Rat 2317038 Ginf3 Gastrointestinal inflammation QTL 3 2.89 0.005 liver integrity trait (VT:0010547) liver granuloma severity score (CMO:0002157) 17 49920154 86533673 Rat 724549 Niddm56 Non-insulin dependent diabetes mellitus QTL 56 0.03 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 31990784 76990784 Rat 1354651 Lmblg2 Limb length QTL 2 6 tibia length (VT:0004357) tibia length (CMO:0000450) 17 4299130 69599340 Rat 1598871 Memor5 Memory QTL 5 5.3 exploratory behavior trait (VT:0010471) total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) 17 40540041 80387013 Rat 1354630 Cm34 Cardiac mass QTL 34 8.7 heart left ventricle mass (VT:0007031) heart left ventricle wet weight (CMO:0000071) 17 4299130 69599340 Rat 1600398 Edcs5 Endometrial carcinoma susceptibility QTL 5 2.2 uterus morphology trait (VT:0001120) percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759) 17 57246723 70852846 Rat 2317045 Aia11 Adjuvant induced arthritis QTL 11 4.06 joint integrity trait (VT:0010548) left rear ankle joint diameter (CMO:0002149) 17 60781426 86533673 Rat 1559055 Bp278 Blood pressure QTL 278 0.04 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 23653184 68653184 Rat 152025238 Slep14 Serum leptin concentration QTL 14 4.62 blood leptin amount (VT:0005667) 17 24184890 79524188 Rat 1354638 Insul1 Insulin level QTL 1 4.8 blood insulin amount (VT:0001560) plasma insulin level (CMO:0000342) 17 4299130 69599340 Rat 2317054 Aia12 Adjuvant induced arthritis QTL 12 4.24 joint integrity trait (VT:0010548) left rear ankle joint diameter (CMO:0002149) 17 38281509 83281509 Rat 1354635 Bp245 Blood pressure QTL 245 6 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 42073160 69599340 Rat 8694181 Bw151 Body weight QTL 151 4.36 0.001 body mass (VT:0001259) body weight gain (CMO:0000420) 17 48560935 86533673 Rat 8552928 Pigfal9 Plasma insulin-like growth factor 1 level QTL 9 9 blood insulin-like growth factor amount (VT:0010479) plasma insulin-like growth factor 1 level (CMO:0001299) 17 28409147 73409147 Rat 1300148 Bp192 Blood pressure QTL 192 3.47 arterial blood pressure trait (VT:2000000) blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) 17 34550843 73951021 Rat 2317060 Aia26 Adjuvant induced arthritis QTL 26 3.22 joint integrity trait (VT:0010548) right rear ankle joint diameter (CMO:0002150) 17 38281509 83281509 Rat 12903980 Cm120 Cardiac mass QTL 120 0.002 heart right ventricle mass (VT:0007033) heart right ventricle weight to body weight ratio (CMO:0000914) 17 23653184 68653184 Rat 12903981 Am17 Aortic mass QTL 17 0.001 aorta mass (VT:0002845) aorta weight to aorta length to body weight ratio (CMO:0002722) 17 23653184 68653184 Rat 12903982 Kidm70 Kidney mass QTL 70 0.001 kidney mass (VT:0002707) both kidneys wet weight to body weight ratio (CMO:0000340) 17 23653184 70974005 Rat 4889894 Eae33 Experimental allergic encephalomyelitis QTL 33 5.2 0.0001 nervous system integrity trait (VT:0010566) experimental autoimmune encephalomyelitis severity score (CMO:0001419) 17 50909099 86022412 Rat 12903978 Cm118 Cardiac mass QTL 118 0.001 heart mass (VT:0007028) heart wet weight to body weight ratio (CMO:0002408) 17 23653184 68653184 Rat 2324621 Coatc5 Coat color QTL 5 coat/hair pigmentation trait (VT:0010463) pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812) 17 31368391 73951021 Rat 12903979 Cm119 Cardiac mass QTL 119 0.001 heart left ventricle mass (VT:0007031) heart left ventricle weight to body weight ratio (CMO:0000530) 17 23653184 68653184 Rat 1354619 Bp242 Blood pressure QTL 242 6.3 arterial blood pressure trait (VT:2000000) systolic blood pressure (CMO:0000004) 17 24599340 69599340 Rat 1300131 Bp193 Blood pressure QTL 193 3.3 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 63640009 73951021 Rat 7488963 Bp369 Blood pressure QTL 369 0.001 arterial blood pressure trait (VT:2000000) mean arterial blood pressure (CMO:0000009) 17 59005649 77910000 Rat 1354662 Rf49 Renal function QTL 49 2.9 blood creatinine amount (VT:0005328) plasma creatinine level (CMO:0000537) 17 1 69599340 Rat 152023740 Bp406 Blood pressure QTL 406 6.06 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 1354663 Bvd5 Brain ventricular dilatation QTL 5 3.51 0.001 brain ventricle morphology trait (VT:0000822) hydrocephalus severity score (CMO:0001881) 17 31990784 81292925 Rat 152023737 Bp405 Blood pressure QTL 405 5.06 arterial blood pressure trait (VT:2000000) 23930421 79524188 Rat 152023736 Bp404 Blood pressure QTL 404 3.78 arterial blood pressure trait (VT:2000000) 17 23930421 79524188 Rat 724528 Uae4 Urinary albumin excretion QTL 4 4.9 0.0001 urine albumin amount (VT:0002871) urine albumin excretion rate (CMO:0000757) 17 35837085 69599340 Rat 2302365 Gluco40 Glucose level QTL 40 4.79 blood glucose amount (VT:0000188) blood glucose level area under curve (AUC) (CMO:0000350) 17 57246843 82046127 Rat 2303580 Gluco49 Glucose level QTL 49 2 blood glucose amount (VT:0000188) blood glucose level (CMO:0000046) 17 50040271 86533673 Rat
RH130616
Rat Assembly Chr Position (strand) Source JBrowse mRatBN7.2 17 66,422,774 - 66,422,988 (+) MAPPER mRatBN7.2 Rnor_6.0 17 70,073,298 - 70,073,510 NCBI Rnor6.0 Rnor_5.0 17 71,776,856 - 71,777,068 UniSTS Rnor5.0 RGSC_v3.4 17 77,595,656 - 77,595,868 UniSTS RGSC3.4 Celera 17 65,928,495 - 65,928,707 UniSTS RH 3.4 Map 17 635.5 UniSTS Cytogenetic Map 17 q12.3 UniSTS
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
9
11
29
53
88
88
57
25
57
6
196
77
33
45
59
31
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSRNOT00000046667 ⟹ ENSRNOP00000043121
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source mRatBN7.2 Ensembl 17 66,419,882 - 66,423,175 (+) Ensembl Rnor_6.0 Ensembl 17 70,072,156 - 70,073,530 (+) Ensembl
RefSeq Acc Id:
NM_001012054 ⟹ NP_001012054
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 17 71,331,526 - 71,332,902 (+) NCBI mRatBN7.2 17 66,421,633 - 66,423,009 (+) NCBI Rnor_6.0 17 70,072,156 - 70,073,531 (+) NCBI Rnor_5.0 17 71,774,029 - 71,777,255 (+) NCBI RGSC_v3.4 17 77,594,514 - 77,595,889 (+) RGD Celera 17 65,927,353 - 65,928,728 (+) RGD
Sequence:
CAGAGCTGGGGAGAGGAGCCCAGCCCACAGTTAGTGCTTGGAAGCATAGACCAGACTGACCACATCTGCCACATCACCCGAGATCTGCTAGCATGGCCAACCAGCTGACTGAGGAGCAAATCGCCGAG
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RefSeq Acc Id:
XM_006254208 ⟹ XP_006254270
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 17 71,329,438 - 71,333,068 (+) NCBI mRatBN7.2 17 66,419,844 - 66,423,083 (+) NCBI Rnor_6.0 17 70,070,458 - 70,073,697 (+) NCBI Rnor_5.0 17 71,774,029 - 71,777,255 (+) NCBI
Sequence:
GGTTCATTTCACGGTGAGTGGAAGAAGTATGTTGTCTCCCTTGCCTCTCCCACAGCGAACTCTTTCCTTCTCTCTTCTTCCCACACACTCAAGGCCTCGGCTTTGGGGGACCCCTTCGAGCAGGAAGT
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RefSeq Acc Id:
XM_063276491 ⟹ XP_063132561
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 17 71,329,438 - 71,333,068 (+) NCBI
RefSeq Acc Id:
XM_063276492 ⟹ XP_063132562
Type:
CODING
Position:
Rat Assembly Chr Position (strand) Source GRCr8 17 71,330,738 - 71,333,068 (+) NCBI
RefSeq Acc Id:
NP_001012054 ⟸ NM_001012054
- UniProtKB:
Q5U206 (UniProtKB/Swiss-Prot), A6JLQ5 (UniProtKB/TrEMBL)
- Sequence:
MANQLTEEQIAEFKEAFSLFDKDGDGCITTQELGTVMRSLGQNPTEAELQDMVNEIDKDGNGTVDFPEFLTMMSRKMKDTDSEEEIREAFRVFDKDGNGFVSAAELRHVMTRLGEKLSDEEVDEMIQA
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RefSeq Acc Id:
XP_006254270 ⟸ XM_006254208
- Peptide Label:
isoform X1
- UniProtKB:
Q5U206 (UniProtKB/Swiss-Prot), A6JLQ5 (UniProtKB/TrEMBL)
- Sequence:
MANQLTEEQIAEFKEAFSLFDKDGDGCITTQELGTVMRSLGQNPTEAELQDMVNEIDKDGNGTV
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Ensembl Acc Id:
ENSRNOP00000043121 ⟸ ENSRNOT00000046667
RefSeq Acc Id:
XP_063132561 ⟸ XM_063276491
- Peptide Label:
isoform X1
- UniProtKB:
Q5U206 (UniProtKB/Swiss-Prot), A6JLQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_063132562 ⟸ XM_063276492
- Peptide Label:
isoform X1
- UniProtKB:
Q5U206 (UniProtKB/Swiss-Prot), A6JLQ5 (UniProtKB/TrEMBL)
RGD ID: 13700551 Promoter ID: EPDNEW_R11075 Type: multiple initiation site Name: Calml3_1 Description: calmodulin-like 3 SO ACC ID: SO:0000170 Source: EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/ ) Experiment Methods: Single-end sequencing. Position: Rat Assembly Chr Position (strand) Source Rnor_6.0 17 70,072,109 - 70,072,169 EPDNEW
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2005-12-06
Calml3
calmodulin-like 3
Calml3_predicted
calmodulin-like 3 (predicted)
Symbol and Name updated
1559027 APPROVED
2005-01-12
Calml3_predicted
calmodulin-like 3 (predicted)
Symbol and Name status set to approved
70820 APPROVED
