Tfcp2l1 (transcription factor CP2-like 1) - Rat Genome Database

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Gene: Tfcp2l1 (transcription factor CP2-like 1) Rattus norvegicus
Analyze
Symbol: Tfcp2l1
Name: transcription factor CP2-like 1
RGD ID: 1305456
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including determination of adult lifespan; epithelial cell maturation; and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and membrane. Predicted to be active in nucleus. Orthologous to human TFCP2L1 (transcription factor CP2 like 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304741; Tcfcp2l1; transcription factor CP2-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,286,643 - 32,346,671 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1332,286,643 - 32,346,671 (+)EnsemblGRCr8
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)Ensemblrn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1329,637,385 - 29,697,059 (+)NCBICelera
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Cytogenetic Map13q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetic acid  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (EXP)
copper(II) chloride  (ISO)
copper(II) sulfate  (ISO)
DDE  (ISO)
deoxynivalenol  (ISO)
dibenz[a,h]anthracene  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
furan  (EXP)
glycidyl methacrylate  (ISO)
lead diacetate  (EXP,ISO)
mercaptopurine  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
phenobarbital  (EXP,ISO)
PhIP  (EXP)
progesterone  (ISO)
propanal  (ISO)
purine-6-thiol  (EXP)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
membrane  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11073954   PMID:17079272   PMID:20661472  


Genomics

Comparative Map Data
Tfcp2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,286,643 - 32,346,671 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1332,286,643 - 32,346,671 (+)EnsemblGRCr8
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)Ensemblrn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1329,637,385 - 29,697,059 (+)NCBICelera
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Cytogenetic Map13q11NCBI
TFCP2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,216,587 - 121,285,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2121,216,587 - 121,285,202 (-)Ensemblhg38GRCh38
GRCh372121,974,163 - 122,042,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,695,004 - 121,759,245 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342121,694,763 - 121,759,005NCBI
Celera2115,298,911 - 115,367,497 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2114,296,716 - 114,365,195 (-)NCBIHuRef
CHM1_12121,978,265 - 122,046,863 (-)NCBICHM1_1
T2T-CHM13v2.02121,651,879 - 121,720,501 (-)NCBIT2T-CHM13v2.0
Tfcp2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,555,646 - 118,612,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,555,675 - 118,612,898 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381118,627,923 - 118,685,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,627,945 - 118,685,168 (+)Ensemblmm10GRCm38
MGSCv371120,524,522 - 120,581,745 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361120,455,496 - 120,512,714 (+)NCBIMGSCv36mm8
Celera1121,290,045 - 121,347,496 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.14NCBI
Tfcp2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,657,188 - 8,717,133 (+)Ensembl
ChiLan1.0NW_0049554598,657,188 - 8,716,878 (+)NCBIChiLan1.0ChiLan1.0
TFCP2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21323,218,336 - 23,286,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B23,233,304 - 23,301,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B8,155,839 - 8,219,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B121,729,061 - 121,791,512 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,729,061 - 121,792,281 (-)EnsemblpanPan2panpan1.1
TFCP2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,869,454 - 28,923,835 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,869,453 - 28,922,354 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1929,126,589 - 29,181,499 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01930,243,716 - 30,298,640 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1930,243,677 - 30,296,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,932,623 - 28,987,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01929,103,229 - 29,158,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01930,283,610 - 30,339,009 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tfcp2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,196,356 - 92,252,237 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646949,365,528 - 49,420,328 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646949,365,582 - 49,420,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFCP2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,072,172 - 30,137,083 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11530,072,142 - 30,131,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,005,991 - 35,064,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFCP2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,010,583 - 9,079,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl109,011,036 - 9,072,084 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606113,617,910 - 13,688,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfcp2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tfcp2l1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11011,214,499 - 11,267,009 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tfcp2l1
481 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:567
Count of miRNA genes:268
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000003280
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134785618Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)131186625456866254Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131228551734884386Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132485392569853925Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131244842147969993Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131746828262468282Rat
2303030Bp327Blood pressure QTL 327arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13143736554Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131238432057384320Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13742179187286911Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131228551734884386Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13600200847359539Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)132433543255601132Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131244842148744906Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1321120177109350286Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132624480871244808Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1311081740103588154Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13600200888706694Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)13308875548088755Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13600200837088115Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132624480871244808Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131103588154Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131771133662711336Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13134785618Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)131186625456866254Rat

Markers in Region
D13Rat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81332,320,525 - 32,320,727 (+)Marker Load Pipeline
mRatBN7.21329,767,721 - 29,767,923 (+)MAPPERmRatBN7.2
Rnor_6.01334,645,661 - 34,645,862NCBIRnor6.0
Rnor_5.01339,775,295 - 39,775,496UniSTSRnor5.0
RGSC_v3.41331,321,718 - 31,321,920RGDRGSC3.4
RGSC_v3.41331,321,719 - 31,321,920UniSTSRGSC3.4
Celera1329,670,886 - 29,671,087UniSTS
RGSC_v3.11331,324,542 - 31,324,744RGD
SHRSP x BN Map133.44UniSTS
SHRSP x BN Map133.44RGD
Cytogenetic Map13q11UniSTS
D13Got216  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01334,647,951 - 34,648,142NCBIRnor6.0
Rnor_5.01339,777,585 - 39,777,776UniSTSRnor5.0
RGSC_v3.41331,324,009 - 31,324,195UniSTSRGSC3.4
Celera1329,673,186 - 29,673,372UniSTS
Cytogenetic Map13q11UniSTS
PMC304100P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21329,793,550 - 29,793,832 (+)MAPPERmRatBN7.2
Rnor_6.01334,671,298 - 34,671,579NCBIRnor6.0
Rnor_5.01339,800,932 - 39,801,213UniSTSRnor5.0
RGSC_v3.41331,345,051 - 31,345,332UniSTSRGSC3.4
RGSC_v3.41331,401,163 - 31,401,444UniSTSRGSC3.4
Celera1329,696,740 - 29,697,021UniSTS
Cytogenetic Map13q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 154 91 90 59 71 59 6 335 171 11 133 81 92 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000003280   ⟹   ENSRNOP00000003280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1332,286,643 - 32,346,671 (+)Ensembl
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)Ensembl
Rnor_6.0 Ensembl1334,610,689 - 34,670,124 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000093019   ⟹   ENSRNOP00000076006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1334,610,684 - 34,665,404 (+)Ensembl
RefSeq Acc Id: NM_001107170   ⟹   NP_001100640
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81332,286,643 - 32,346,671 (+)NCBI
mRatBN7.21329,733,840 - 29,793,870 (+)NCBI
Rnor_6.01334,610,689 - 34,671,617 (+)NCBI
Rnor_5.01339,741,256 - 39,801,251 (+)NCBI
RGSC_v3.41331,288,228 - 31,401,482 (+)RGD
Celera1329,637,385 - 29,697,059 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090683   ⟹   XP_038946611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81332,316,502 - 32,346,668 (+)NCBI
mRatBN7.21329,763,698 - 29,793,867 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100640 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL87906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003280
  ENSRNOP00000003280.5
RefSeq Acc Id: NP_001100640   ⟸   NM_001107170
- UniProtKB: D3ZHA6 (UniProtKB/TrEMBL),   A6K7W1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076006   ⟸   ENSRNOT00000093019
Ensembl Acc Id: ENSRNOP00000003280   ⟸   ENSRNOT00000003280
RefSeq Acc Id: XP_038946611   ⟸   XM_039090683
- Peptide Label: isoform X1
Protein Domains
Grh/CP2 DB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHA6-F1-model_v2 AlphaFold D3ZHA6 1-479 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698760
Promoter ID:EPDNEW_R9285
Type:single initiation site
Name:Tfcp2l1_1
Description:transcription factor CP2-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01334,610,685 - 34,610,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305456 AgrOrtholog
BioCyc Gene G2FUF-18531 BioCyc
Ensembl Genes ENSRNOG00000002414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003280 ENTREZGENE
  ENSRNOT00000003280.9 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  GRHL1/CP2_C UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
  TFCP2L1_SAM UniProtKB/TrEMBL
KEGG Report rno:304741 UniProtKB/TrEMBL
NCBI Gene 304741 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR CP2-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  GRHL1_C UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
PhenoGen Tfcp2l1 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002414 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A6K7W1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHA6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-01-19 Tfcp2l1  transcription factor CP2-like 1  Tcfcp2l1  transcription factor CP2-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tcfcp2l1  transcription factor CP2-like 1   Tcfcp2l1_predicted  transcription factor CP2-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tcfcp2l1_predicted  transcription factor CP2-like 1 (predicted)  Tfcp2l1_predicted    Symbol updated 1299863 APPROVED
2005-01-12 Tfcp2l1_predicted  transcription factor CP2-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED