Tfcp2l1 (transcription factor CP2 like 1) - Rat Genome Database

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Gene: Tfcp2l1 (transcription factor CP2 like 1) Heterocephalus glaber
Analyze
Symbol: Tfcp2l1
Name: transcription factor CP2 like 1
RGD ID: 18928015
Description: ENCODES a protein that exhibits RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); cytoplasm organization (ortholog); determination of adult lifespan (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Transcription factor CP2-like protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tfcp2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TFCP2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,216,587 - 121,285,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2121,216,587 - 121,285,202 (-)EnsemblGRCh38hg38GRCh38
GRCh372121,974,163 - 122,042,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,695,004 - 121,759,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 342121,694,763 - 121,759,005NCBI
Celera2115,298,911 - 115,367,497 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2114,296,716 - 114,365,195 (-)NCBIHuRef
CHM1_12121,978,265 - 122,046,863 (-)NCBICHM1_1
T2T-CHM13v2.02121,651,879 - 121,720,501 (-)NCBIT2T-CHM13v2.0
Tfcp2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,555,646 - 118,612,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,555,675 - 118,612,898 (+)EnsemblGRCm39 Ensembl
GRCm381118,627,923 - 118,685,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,627,945 - 118,685,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,524,522 - 120,581,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,455,496 - 120,512,714 (+)NCBIMGSCv36mm8
Celera1121,290,045 - 121,347,496 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.14NCBI
Tfcp2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,286,643 - 32,346,671 (+)NCBIGRCr8
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Celera1329,637,385 - 29,697,059 (+)NCBICelera
Cytogenetic Map13q11NCBI
Tfcp2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,657,188 - 8,717,133 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,657,188 - 8,716,878 (+)NCBIChiLan1.0ChiLan1.0
TFCP2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21323,218,336 - 23,286,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B23,233,304 - 23,301,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B8,155,839 - 8,219,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B121,729,061 - 121,791,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,729,061 - 121,792,281 (-)Ensemblpanpan1.1panPan2
TFCP2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,869,454 - 28,923,835 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,869,453 - 28,922,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1929,126,589 - 29,181,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01930,243,716 - 30,298,640 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1930,243,677 - 30,296,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,932,623 - 28,987,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01929,103,229 - 29,158,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01930,283,610 - 30,339,009 (+)NCBIUU_Cfam_GSD_1.0
Tfcp2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,196,356 - 92,252,237 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646949,365,528 - 49,420,328 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646949,365,582 - 49,420,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFCP2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,072,172 - 30,137,083 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,072,142 - 30,131,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,005,991 - 35,064,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFCP2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,010,583 - 9,079,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl109,011,036 - 9,072,084 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606113,617,910 - 13,688,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008308   ⟹   ENSHGLP00000008219
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)Ensembl
RefSeq Acc Id: ENSHGLT00000008309   ⟹   ENSHGLP00000008220
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)Ensembl
RefSeq Acc Id: XM_004836045   ⟹   XP_004836102
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473223,855,363 - 23,911,731 (+)NCBI
RefSeq Acc Id: XM_004836046   ⟹   XP_004836103
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473223,855,364 - 23,911,731 (+)NCBI
RefSeq Acc Id: XM_021236517   ⟹   XP_021092176
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBI
RefSeq Acc Id: XM_021236519   ⟹   XP_021092178
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473223,855,363 - 23,911,731 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004836102 (Get FASTA)   NCBI Sequence Viewer  
  XP_004836103 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092176 (Get FASTA)   NCBI Sequence Viewer  
  XP_021092178 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB04272 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008219
  ENSHGLP00000008220
  ENSHGLP00000032136
GenBank Protein JAN97672 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021092176   ⟸   XM_021236517
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004836102   ⟸   XM_004836045
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092178   ⟸   XM_021236519
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004836103   ⟸   XM_004836046
- Peptide Label: isoform X2
- UniProtKB: G5B4R1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008219   ⟸   ENSHGLT00000008308
RefSeq Acc Id: ENSHGLP00000008220   ⟸   ENSHGLT00000008309


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005946 Ensembl, ENTREZGENE
  ENSHGLG00000041072 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008308 ENTREZGENE
  ENSHGLT00000008309 ENTREZGENE
  ENSHGLT00000064874 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
  TFCP2L1_SAM UniProtKB/TrEMBL
NCBI Gene Tfcp2l1 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR CP2-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt G5B4R1 ENTREZGENE, UniProtKB/TrEMBL