Tfcp2l1 (transcription factor CP2-like 1) - Rat Genome Database

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Gene: Tfcp2l1 (transcription factor CP2-like 1) Rattus norvegicus
Analyze
Symbol: Tfcp2l1
Name: transcription factor CP2-like 1
RGD ID: 1305456
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including determination of adult lifespan; epithelial cell maturation; and negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and membrane. Predicted to be active in nucleus. Orthologous to human TFCP2L1 (transcription factor CP2 like 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC304741; Tcfcp2l1; transcription factor CP2-like protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,286,643 - 32,346,671 (+)NCBIGRCr8
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Celera1329,637,385 - 29,697,059 (+)NCBICelera
Cytogenetic Map13q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetic acid  (ISO)
acrylamide  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chrysene  (ISO)
ciguatoxin CTX1B  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
deoxynivalenol  (ISO)
dibenz[a,h]anthracene  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
fenthion  (ISO)
furan  (EXP)
glycidyl methacrylate  (ISO)
lead diacetate  (EXP)
mercaptopurine  (EXP)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-ethyl-N-nitrosourea  (ISO)
nickel atom  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
PhIP  (EXP)
progesterone  (ISO)
propanal  (ISO)
purine-6-thiol  (EXP)
rac-lactic acid  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
membrane  (ISO)
nucleus  (IBA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11073954   PMID:17079272   PMID:20661472  


Genomics

Comparative Map Data
Tfcp2l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81332,286,643 - 32,346,671 (+)NCBIGRCr8
mRatBN7.21329,733,813 - 29,793,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1332,316,989 - 32,377,008 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01333,604,823 - 33,664,840 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01330,883,335 - 30,943,244 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01334,610,689 - 34,671,617 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1334,610,684 - 34,670,124 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01339,741,256 - 39,801,251 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41331,288,228 - 31,401,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11331,287,875 - 31,343,809 (+)NCBI
Celera1329,637,385 - 29,697,059 (+)NCBICelera
Cytogenetic Map13q11NCBI
TFCP2L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382121,216,587 - 121,285,202 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2121,216,587 - 121,285,202 (-)EnsemblGRCh38hg38GRCh38
GRCh372121,974,163 - 122,042,778 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,695,004 - 121,759,245 (-)NCBINCBI36Build 36hg18NCBI36
Build 342121,694,763 - 121,759,005NCBI
Celera2115,298,911 - 115,367,497 (-)NCBICelera
Cytogenetic Map2q14.2NCBI
HuRef2114,296,716 - 114,365,195 (-)NCBIHuRef
CHM1_12121,978,265 - 122,046,863 (-)NCBICHM1_1
T2T-CHM13v2.02121,651,879 - 121,720,501 (-)NCBIT2T-CHM13v2.0
Tfcp2l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391118,555,646 - 118,612,898 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1118,555,675 - 118,612,898 (+)EnsemblGRCm39 Ensembl
GRCm381118,627,923 - 118,685,168 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1118,627,945 - 118,685,168 (+)EnsemblGRCm38mm10GRCm38
MGSCv371120,524,522 - 120,581,745 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,455,496 - 120,512,714 (+)NCBIMGSCv36mm8
Celera1121,290,045 - 121,347,496 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
cM Map152.14NCBI
Tfcp2l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554598,657,188 - 8,717,133 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554598,657,188 - 8,716,878 (+)NCBIChiLan1.0ChiLan1.0
TFCP2L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21323,218,336 - 23,286,921 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B23,233,304 - 23,301,889 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B8,155,839 - 8,219,017 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B121,729,061 - 121,791,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B121,729,061 - 121,792,281 (-)Ensemblpanpan1.1panPan2
TFCP2L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11928,869,454 - 28,923,835 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1928,869,453 - 28,922,354 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1929,126,589 - 29,181,499 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01930,243,716 - 30,298,640 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1930,243,677 - 30,296,099 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11928,932,623 - 28,987,810 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01929,103,229 - 29,158,240 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01930,283,610 - 30,339,009 (+)NCBIUU_Cfam_GSD_1.0
Tfcp2l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530392,196,356 - 92,252,237 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646949,365,528 - 49,420,328 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646949,365,582 - 49,420,307 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFCP2L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1530,072,172 - 30,137,083 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11530,072,142 - 30,131,810 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21535,005,991 - 35,064,967 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFCP2L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1109,010,583 - 9,079,869 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl109,011,036 - 9,072,084 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606113,617,910 - 13,688,089 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfcp2l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473223,855,336 - 23,915,589 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473223,855,361 - 23,911,731 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tfcp2l1
350 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:567
Count of miRNA genes:268
Interacting mature miRNAs:335
Transcripts:ENSRNOT00000003280
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317027Aia22Adjuvant induced arthritis QTL 222.29joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)13134266636Rat
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
631672Iddm12Insulin dependent diabetes mellitus QTL 122.20.0032blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)13599466834535351Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317034Aia9Adjuvant induced arthritis QTL 94.62joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)131176653532331607Rat
2317044Aia23Adjuvant induced arthritis QTL 232.3joint integrity trait (VT:0010548)ankle joint diameter (CMO:0002148)131176653532331607Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat

Markers in Region
D13Rat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21329,767,721 - 29,767,923 (+)MAPPERmRatBN7.2
Rnor_6.01334,645,661 - 34,645,862NCBIRnor6.0
Rnor_5.01339,775,295 - 39,775,496UniSTSRnor5.0
RGSC_v3.41331,321,718 - 31,321,920RGDRGSC3.4
RGSC_v3.41331,321,719 - 31,321,920UniSTSRGSC3.4
RGSC_v3.11331,324,542 - 31,324,744RGD
Celera1329,670,886 - 29,671,087UniSTS
SHRSP x BN Map133.44RGD
SHRSP x BN Map133.44UniSTS
Cytogenetic Map13q11UniSTS
D13Got216  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01334,647,951 - 34,648,142NCBIRnor6.0
Rnor_5.01339,777,585 - 39,777,776UniSTSRnor5.0
RGSC_v3.41331,324,009 - 31,324,195UniSTSRGSC3.4
Celera1329,673,186 - 29,673,372UniSTS
Cytogenetic Map13q11UniSTS
PMC304100P4  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21329,793,550 - 29,793,832 (+)MAPPERmRatBN7.2
Rnor_6.01334,671,298 - 34,671,579NCBIRnor6.0
Rnor_5.01339,800,932 - 39,801,213UniSTSRnor5.0
RGSC_v3.41331,345,051 - 31,345,332UniSTSRGSC3.4
RGSC_v3.41331,401,163 - 31,401,444UniSTSRGSC3.4
Celera1329,696,740 - 29,697,021UniSTS
Cytogenetic Map13q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 4 1 35 10 10
Low 2 34 45 33 18 33 8 9 74 31 1 8
Below cutoff 9 8 8 8 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003280   ⟹   ENSRNOP00000003280
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1329,733,840 - 29,793,870 (+)Ensembl
Rnor_6.0 Ensembl1334,610,689 - 34,670,124 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000093019   ⟹   ENSRNOP00000076006
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1334,610,684 - 34,665,404 (+)Ensembl
RefSeq Acc Id: NM_001107170   ⟹   NP_001100640
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81332,286,643 - 32,346,671 (+)NCBI
mRatBN7.21329,733,840 - 29,793,870 (+)NCBI
Rnor_6.01334,610,689 - 34,671,617 (+)NCBI
Rnor_5.01339,741,256 - 39,801,251 (+)NCBI
RGSC_v3.41331,288,228 - 31,401,482 (+)RGD
Celera1329,637,385 - 29,697,059 (+)RGD
Sequence:
RefSeq Acc Id: XM_039090683   ⟹   XP_038946611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81332,316,502 - 32,346,668 (+)NCBI
mRatBN7.21329,763,698 - 29,793,867 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001100640 (Get FASTA)   NCBI Sequence Viewer  
  XP_038946611 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL87906 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003280
  ENSRNOP00000003280.4
Reference Protein Sequences
RefSeq Acc Id: NP_001100640   ⟸   NM_001107170
- UniProtKB: D3ZHA6 (UniProtKB/TrEMBL),   A6K7W1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000076006   ⟸   ENSRNOT00000093019
RefSeq Acc Id: ENSRNOP00000003280   ⟸   ENSRNOT00000003280
RefSeq Acc Id: XP_038946611   ⟸   XM_039090683
- Peptide Label: isoform X1
Protein Domains
Grh/CP2 DB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZHA6-F1-model_v2 AlphaFold D3ZHA6 1-479 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698760
Promoter ID:EPDNEW_R9285
Type:single initiation site
Name:Tfcp2l1_1
Description:transcription factor CP2-like 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01334,610,685 - 34,610,745EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305456 AgrOrtholog
BioCyc Gene G2FUF-18531 BioCyc
Ensembl Genes ENSRNOG00000002414 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003280 ENTREZGENE
  ENSRNOT00000003280.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CP2 UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
  TF_CP2-like UniProtKB/TrEMBL
  TFCP2L1_SAM UniProtKB/TrEMBL
KEGG Report rno:304741 UniProtKB/TrEMBL
NCBI Gene 304741 ENTREZGENE
PANTHER TRANSCRIPTION FACTOR CP2 UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR CP2-LIKE PROTEIN 1 UniProtKB/TrEMBL
Pfam CP2 UniProtKB/TrEMBL
  SAM_3 UniProtKB/TrEMBL
PhenoGen Tfcp2l1 PhenoGen
PROSITE GRH_CP2_DB UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002414 RatGTEx
Superfamily-SCOP SAM_homology UniProtKB/TrEMBL
UniProt A6K7W1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZHA6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-01-19 Tfcp2l1  transcription factor CP2-like 1  Tcfcp2l1  transcription factor CP2-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Tcfcp2l1  transcription factor CP2-like 1   Tcfcp2l1_predicted  transcription factor CP2-like 1 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Tcfcp2l1_predicted  transcription factor CP2-like 1 (predicted)  Tfcp2l1_predicted    Symbol updated 1299863 APPROVED
2005-01-12 Tfcp2l1_predicted  transcription factor CP2-like 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED