Ky (kyphoscoliosis peptidase) - Rat Genome Database

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Gene: Ky (kyphoscoliosis peptidase) Rattus norvegicus
Analyze
Symbol: Ky
Name: kyphoscoliosis peptidase
RGD ID: 1305407
Description: Predicted to be involved in muscle organ development and neuromuscular junction development. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in myofibrillar myopathy 7. Orthologous to human KY (kyphoscoliosis peptidase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: kyphoscoliosis; LOC315962
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88111,965,862 - 112,005,206 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8111,965,862 - 112,005,206 (+)EnsemblGRCr8
mRatBN7.28103,086,959 - 103,126,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,086,630 - 103,126,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8108,752,176 - 108,791,764 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08106,951,338 - 106,990,930 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08104,794,007 - 104,833,596 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08110,982,777 - 111,022,666 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8110,982,777 - 111,022,385 (+)Ensemblrn6Rnor6.0
Rnor_5.08110,380,954 - 110,420,671 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48107,471,604 - 107,511,797 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8102,468,789 - 102,507,869 (+)NCBICelera
RGSC_v3.18107,491,056 - 107,528,416 (+)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
Z disc  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11136708   PMID:20206623  


Genomics

Comparative Map Data
Ky
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88111,965,862 - 112,005,206 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8111,965,862 - 112,005,206 (+)EnsemblGRCr8
mRatBN7.28103,086,959 - 103,126,305 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8103,086,630 - 103,126,024 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8108,752,176 - 108,791,764 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08106,951,338 - 106,990,930 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08104,794,007 - 104,833,596 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08110,982,777 - 111,022,666 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8110,982,777 - 111,022,385 (+)Ensemblrn6Rnor6.0
Rnor_5.08110,380,954 - 110,420,671 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48107,471,604 - 107,511,797 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8102,468,789 - 102,507,869 (+)NCBICelera
RGSC_v3.18107,491,056 - 107,528,416 (+)NCBI
Cytogenetic Map8q32NCBI
KY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383134,599,923 - 134,651,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3134,599,923 - 134,651,636 (-)Ensemblhg38GRCh38
GRCh373134,318,765 - 134,369,864 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363135,801,455 - 135,852,554 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343135,804,821 - 135,852,562NCBI
Celera3132,744,525 - 132,796,369 (-)NCBICelera
Cytogenetic Map3q22.2NCBI
HuRef3131,695,624 - 131,746,740 (-)NCBIHuRef
CHM1_13134,282,875 - 134,333,986 (-)NCBICHM1_1
T2T-CHM13v2.03137,345,261 - 137,396,375 (-)NCBIT2T-CHM13v2.0
Ky
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399102,382,954 - 102,423,443 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9102,382,949 - 102,423,438 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389102,505,755 - 102,546,247 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9102,505,750 - 102,546,239 (+)Ensemblmm10GRCm38
MGSCv379102,408,468 - 102,448,569 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369102,362,401 - 102,402,174 (+)NCBIMGSCv36mm8
Celera9102,047,021 - 102,087,125 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map954.54NCBI
Ky
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555013,961,198 - 4,005,191 (+)Ensembl
ChiLan1.0NW_0049555013,961,603 - 4,005,095 (+)NCBIChiLan1.0ChiLan1.0
KY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22132,525,597 - 132,577,235 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13132,530,445 - 132,581,966 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03131,646,356 - 131,697,727 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13139,117,047 - 139,168,864 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3139,120,711 - 139,168,785 (-)EnsemblpanPan2panpan1.1
KY
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12331,325,429 - 31,371,062 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2331,325,397 - 31,370,357 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2331,300,990 - 31,349,230 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02331,837,259 - 31,885,520 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2331,837,268 - 31,885,759 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12331,534,415 - 31,582,635 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02331,595,009 - 31,643,221 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02331,841,812 - 31,890,051 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ky
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560270,897,466 - 70,944,006 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365297,657,957 - 7,704,517 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365297,657,963 - 7,704,482 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KY
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1375,726,041 - 75,774,986 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11375,726,031 - 75,774,981 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21383,262,384 - 83,308,144 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KY
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11555,730,153 - 55,780,641 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1555,730,770 - 55,780,791 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604128,714,591 - 28,764,612 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ky
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473010,908,923 - 10,955,472 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473010,908,558 - 10,955,497 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ky
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1893,806,512 - 93,845,344 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ky
490 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:423
Count of miRNA genes:220
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000010992
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH133882  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,124,626 - 103,124,828 (+)MAPPERmRatBN7.2
Rnor_6.08111,020,988 - 111,021,189NCBIRnor6.0
Rnor_5.08110,418,993 - 110,419,194UniSTSRnor5.0
RGSC_v3.48107,510,400 - 107,510,601UniSTSRGSC3.4
Celera8102,506,472 - 102,506,673UniSTS
RH 3.4 Map81153.7UniSTS
Cytogenetic Map8q32UniSTS
RH131402  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,126,047 - 103,126,231 (+)MAPPERmRatBN7.2
Rnor_6.08111,022,409 - 111,022,592NCBIRnor6.0
Rnor_5.08110,420,414 - 110,420,597UniSTSRnor5.0
RGSC_v3.48107,511,821 - 107,512,004UniSTSRGSC3.4
Celera8102,507,893 - 102,508,076UniSTS
RH 3.4 Map81154.9UniSTS
Cytogenetic Map8q32UniSTS
D9Mgc44e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28103,125,062 - 103,125,241 (+)MAPPERmRatBN7.2
Rnor_6.08111,021,424 - 111,021,602NCBIRnor6.0
Rnor_5.08110,419,429 - 110,419,607UniSTSRnor5.0
RGSC_v3.48107,510,836 - 107,511,014UniSTSRGSC3.4
Celera8102,506,908 - 102,507,086UniSTS
Cytogenetic Map8q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 12 63 133 66 67 36 48 36 6 274 142 11 107 75 83 31 11 11

Sequence


Ensembl Acc Id: ENSRNOT00000010992   ⟹   ENSRNOP00000010992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8111,965,862 - 112,005,206 (+)Ensembl
mRatBN7.2 Ensembl8103,086,630 - 103,126,024 (+)Ensembl
Rnor_6.0 Ensembl8110,982,777 - 111,022,385 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000137375   ⟹   ENSRNOP00000100869
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8111,965,862 - 112,005,206 (+)Ensembl
RefSeq Acc Id: NM_001413796   ⟹   NP_001400725
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88111,965,862 - 112,005,206 (+)NCBI
mRatBN7.28103,086,959 - 103,126,305 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001400725 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77404 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010992
  ENSRNOP00000010992.7
  ENSRNOP00000100869.1
Ensembl Acc Id: ENSRNOP00000010992   ⟸   ENSRNOT00000010992
RefSeq Acc Id: NP_001400725   ⟸   NM_001413796
- UniProtKB: D3Z953 (UniProtKB/TrEMBL),   A6I2H3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000100869   ⟸   ENSRNOT00000137375
Protein Domains
Transglutaminase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z953-F1-model_v2 AlphaFold D3Z953 1-647 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305407 AgrOrtholog
BioCyc Gene G2FUF-29351 BioCyc
Ensembl Genes ENSRNOG00000008210 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010992 ENTREZGENE
  ENSRNOT00000010992.8 UniProtKB/TrEMBL
  ENSRNOT00000137375.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.620.30 UniProtKB/TrEMBL
InterPro CAP/Cytokinesis_protein UniProtKB/TrEMBL
  Ig-like_KY UniProtKB/TrEMBL
  Papain_like_cys_pep_sf UniProtKB/TrEMBL
  Transglutaminase-like UniProtKB/TrEMBL
NCBI Gene 315962 ENTREZGENE
PANTHER CYTOKINESIS PROTEIN 3 UniProtKB/TrEMBL
  KYPHOSCOLIOSIS PEPTIDASE UniProtKB/TrEMBL
Pfam Ig-like_KY UniProtKB/TrEMBL
  Transglut_core UniProtKB/TrEMBL
PhenoGen Ky PhenoGen
RatGTEx ENSRNOG00000008210 RatGTEx
SMART TGc UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0ABK0LI56_RAT UniProtKB/TrEMBL
  A6I2H3 ENTREZGENE, UniProtKB/TrEMBL
  D3Z953 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-04 Ky  kyphoscoliosis peptidase  Ky_predicted  kyphoscoliosis (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-12 Ky_predicted  kyphoscoliosis (predicted)      Symbol and Name status set to approved 70820 APPROVED