Snapc3 (small nuclear RNA activating complex, polypeptide 3) - Rat Genome Database

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Gene: Snapc3 (small nuclear RNA activating complex, polypeptide 3) Rattus norvegicus
Analyze
Symbol: Snapc3
Name: small nuclear RNA activating complex, polypeptide 3
RGD ID: 1305172
Description: Predicted to enable RNA polymerase III type 3 promoter sequence-specific DNA binding activity and bent DNA binding activity. Predicted to contribute to RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and core promoter sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nuclear body and nucleolus. Predicted to be part of snRNA-activating protein complex. Orthologous to human SNAPC3 (small nuclear RNA activating complex polypeptide 3); PARTICIPATES IN RNA polymerase III transcription pathway; INTERACTS WITH bisphenol A; fipronil; genistein.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC103692397; LOC362537; MGC108839; small nuclear RNA-activating complex polypeptide 3; SNAPc subunit 3; snRNA-activating protein complex subunit 3; uncharacterized LOC103692397
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85102,863,867 - 102,890,573 (+)NCBIGRCr8
mRatBN7.2597,817,827 - 97,868,494 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl597,817,947 - 97,844,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5100,209,915 - 100,236,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,002,493 - 102,029,215 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,020,788 - 102,047,517 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05101,526,591 - 101,554,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5101,526,551 - 101,553,489 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05105,538,167 - 105,568,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45102,275,379 - 102,302,085 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15102,280,604 - 102,307,307 (+)NCBI
Celera596,370,393 - 96,397,097 (+)NCBICelera
Cytogenetic Map5q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
6. A structural perspective on RNA polymerase I and RNA polymerase III transcription machineries. Vannini A Biochim Biophys Acta. 2013 Mar-Apr;1829(3-4):258-64. doi: 10.1016/j.bbagrm.2012.09.009. Epub 2012 Sep 29.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Snapc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85102,863,867 - 102,890,573 (+)NCBIGRCr8
mRatBN7.2597,817,827 - 97,868,494 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl597,817,947 - 97,844,650 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5100,209,915 - 100,236,644 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05102,002,493 - 102,029,215 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05102,020,788 - 102,047,517 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05101,526,591 - 101,554,015 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5101,526,551 - 101,553,489 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05105,538,167 - 105,568,391 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45102,275,379 - 102,302,085 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15102,280,604 - 102,307,307 (+)NCBI
Celera596,370,393 - 96,397,097 (+)NCBICelera
Cytogenetic Map5q31NCBI
SNAPC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38915,422,876 - 15,466,735 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl915,422,734 - 15,465,953 (+)EnsemblGRCh38hg38GRCh38
GRCh37915,422,874 - 15,466,733 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36915,412,782 - 15,451,627 (+)NCBINCBI36Build 36hg18NCBI36
Build 34915,412,866 - 15,452,457NCBI
Celera915,356,122 - 15,394,975 (+)NCBICelera
Cytogenetic Map9p22.3NCBI
HuRef915,386,672 - 15,425,248 (+)NCBIHuRef
CHM1_1915,423,370 - 15,462,223 (+)NCBICHM1_1
T2T-CHM13v2.0915,434,805 - 15,478,667 (+)NCBIT2T-CHM13v2.0
Snapc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39483,333,948 - 83,391,256 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl483,335,961 - 83,385,913 (+)EnsemblGRCm39 Ensembl
GRCm38483,415,711 - 83,473,019 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl483,417,724 - 83,467,676 (+)EnsemblGRCm38mm10GRCm38
MGSCv37483,063,648 - 83,099,244 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36482,888,980 - 82,938,828 (+)NCBIMGSCv36mm8
Celera481,958,587 - 81,987,792 (+)NCBICelera
Cytogenetic Map4C3NCBI
cM Map439.46NCBI
Snapc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543418,275,301 - 18,310,682 (+)NCBIChiLan1.0ChiLan1.0
SNAPC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v211109,054,198 - 109,134,082 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan19109,010,665 - 109,140,029 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0915,239,729 - 15,283,644 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1915,743,397 - 15,784,923 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl915,743,397 - 15,782,323 (+)Ensemblpanpan1.1panPan2
SNAPC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11135,704,161 - 35,742,929 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1135,702,849 - 35,742,907 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1134,352,686 - 34,391,463 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01136,607,318 - 36,629,773 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11135,312,476 - 35,351,237 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01135,103,372 - 35,142,105 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01135,761,480 - 35,800,255 (+)NCBIUU_Cfam_GSD_1.0
Snapc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947150,408,742 - 150,444,165 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365398,861,422 - 8,891,614 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365398,861,436 - 8,893,555 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNAPC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1207,215,738 - 207,252,396 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11207,215,731 - 207,252,421 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21231,027,479 - 231,060,793 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNAPC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11264,138,326 - 64,181,434 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1264,141,459 - 64,181,421 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603852,325,291 - 52,375,323 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snapc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473619,569,577 - 19,612,907 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473619,569,562 - 19,609,950 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snapc3
119 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:142
Interacting mature miRNAs:160
Transcripts:ENSRNOT00000015254
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat

Markers in Region
BE105229  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,839,460 - 97,839,610 (+)MAPPERmRatBN7.2
Rnor_6.05101,548,142 - 101,548,291NCBIRnor6.0
Rnor_5.05105,560,755 - 105,560,904UniSTSRnor5.0
RGSC_v3.45102,296,892 - 102,297,041UniSTSRGSC3.4
Celera596,391,904 - 96,392,053UniSTS
RH 3.4 Map5726.8UniSTS
Cytogenetic Map5q31UniSTS
BE098610  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,844,917 - 97,845,079 (+)MAPPERmRatBN7.2
Rnor_6.05101,553,599 - 101,553,760NCBIRnor6.0
Rnor_5.05105,566,212 - 105,566,373UniSTSRnor5.0
RGSC_v3.45102,302,349 - 102,302,510UniSTSRGSC3.4
Celera596,397,361 - 96,397,522UniSTS
RH 3.4 Map5725.5UniSTS
Cytogenetic Map5q31UniSTS
RH138020  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,842,918 - 97,843,127 (+)MAPPERmRatBN7.2
Rnor_6.05101,551,600 - 101,551,808NCBIRnor6.0
Rnor_5.05105,564,213 - 105,564,421UniSTSRnor5.0
RGSC_v3.45102,300,350 - 102,300,558UniSTSRGSC3.4
Celera596,395,362 - 96,395,570UniSTS
RH 3.4 Map5726.6UniSTS
Cytogenetic Map5q31UniSTS
RH139702  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2597,844,917 - 97,845,137 (+)MAPPERmRatBN7.2
Rnor_6.05101,553,599 - 101,553,818NCBIRnor6.0
Rnor_5.05105,566,212 - 105,566,431UniSTSRnor5.0
RGSC_v3.45102,302,349 - 102,302,568UniSTSRGSC3.4
Celera596,397,361 - 96,397,580UniSTS
RH 3.4 Map5727.6UniSTS
Cytogenetic Map5q31UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 40 31 15 19 15 3 3 74 32 41 11 3
Low 3 26 26 26 5 8 3 5
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000015254   ⟹   ENSRNOP00000015254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl597,817,947 - 97,844,650 (+)Ensembl
Rnor_6.0 Ensembl5101,526,551 - 101,553,489 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103195   ⟹   ENSRNOP00000081077
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl597,817,960 - 97,844,650 (+)Ensembl
RefSeq Acc Id: NM_001013212   ⟹   NP_001013230
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,863,867 - 102,890,573 (+)NCBI
mRatBN7.2597,817,947 - 97,844,654 (+)NCBI
Rnor_6.05101,526,629 - 101,553,335 (+)NCBI
Rnor_5.05105,538,167 - 105,568,391 (+)NCBI
RGSC_v3.45102,275,379 - 102,302,085 (+)RGD
Celera596,370,393 - 96,397,097 (+)RGD
Sequence:
RefSeq Acc Id: XM_039110263   ⟹   XP_038966191
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,864,826 - 102,890,573 (+)NCBI
mRatBN7.2597,818,894 - 97,845,369 (+)NCBI
RefSeq Acc Id: XM_063287941   ⟹   XP_063144011
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,864,841 - 102,890,573 (+)NCBI
RefSeq Acc Id: XM_063287942   ⟹   XP_063144012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85102,864,812 - 102,890,573 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001013230   ⟸   NM_001013212
- UniProtKB: Q5BK68 (UniProtKB/Swiss-Prot),   A6J848 (UniProtKB/TrEMBL),   A0A8I5ZRN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000015254   ⟸   ENSRNOT00000015254
RefSeq Acc Id: XP_038966191   ⟸   XM_039110263
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000081077   ⟸   ENSRNOT00000103195
RefSeq Acc Id: XP_063144012   ⟸   XM_063287942
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063144011   ⟸   XM_063287941
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BK68-F1-model_v2 AlphaFold Q5BK68 1-407 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693819
Promoter ID:EPDNEW_R4343
Type:initiation region
Name:Snapc3_1
Description:small nuclear RNA activating complex, polypeptide 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.05101,526,636 - 101,526,696EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305172 AgrOrtholog
BioCyc Gene G2FUF-40875 BioCyc
Ensembl Genes ENSRNOG00000010825 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055011866 UniProtKB/Swiss-Prot
  ENSRNOG00060018923 UniProtKB/Swiss-Prot
  ENSRNOG00065019569 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000015254 ENTREZGENE
  ENSRNOT00000015254.7 UniProtKB/Swiss-Prot
  ENSRNOT00000103195.1 UniProtKB/TrEMBL
  ENSRNOT00055020176 UniProtKB/Swiss-Prot
  ENSRNOT00060032684 UniProtKB/Swiss-Prot
  ENSRNOT00065032954 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7366548 IMAGE-MGC_LOAD
InterPro snRNA-activating_su3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:362537 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108839 IMAGE-MGC_LOAD
NCBI Gene 362537 ENTREZGENE
PANTHER PTHR13421 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNAPC3 UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
PhenoGen Snapc3 PhenoGen
RatGTEx ENSRNOG00000010825 RatGTEx
  ENSRNOG00055011866 RatGTEx
  ENSRNOG00060018923 RatGTEx
  ENSRNOG00065019569 RatGTEx
UniProt A0A8I5ZRN7 ENTREZGENE, UniProtKB/TrEMBL
  A6J848 ENTREZGENE, UniProtKB/TrEMBL
  Q5BK68 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Snapc3  small nuclear RNA activating complex, polypeptide 3  LOC103692397  uncharacterized LOC103692397  Data merged from RGD:9452821 737654 PROVISIONAL
2014-08-25 LOC103692397  uncharacterized LOC103692397      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Snapc3  small nuclear RNA activating complex, polypeptide 3  Snapc3_predicted  small nuclear RNA activating complex, polypeptide 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Snapc3_predicted  small nuclear RNA activating complex, polypeptide 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED