Pdia2 (protein disulfide isomerase family A, member 2) - Rat Genome Database

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Gene: Pdia2 (protein disulfide isomerase family A, member 2) Rattus norvegicus
Analyze
Symbol: Pdia2
Name: protein disulfide isomerase family A, member 2
RGD ID: 1305164
Description: Predicted to enable protein-disulfide reductase activity. Predicted to act upstream of or within platelet aggregation. Predicted to be located in endoplasmic reticulum lumen. Orthologous to human PDIA2 (protein disulfide isomerase family A member 2); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; INTERACTS WITH 6-propyl-2-thiouracil; bis(2-ethylhexyl) phthalate; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC287164; Pdip; protein disulfide isomerase A2; protein disulfide isomerase associated 2; protein disulfide isomerase, pancreatic; protein disulfide-isomerase A2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,720,301 - 15,723,386 (-)NCBIGRCr8
mRatBN7.21015,215,824 - 15,218,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,215,824 - 15,220,931 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,955,596 - 19,958,670 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,444,475 - 19,447,549 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,943,755 - 14,946,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.01015,376,461 - 15,379,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,462,935 - 15,466,009 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,463,985 - 15,467,059 (-)NCBI
Celera1014,883,630 - 14,886,704 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
2. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16677074   PMID:19103594   PMID:19429457   PMID:25122773  


Genomics

Comparative Map Data
Pdia2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,720,301 - 15,723,386 (-)NCBIGRCr8
mRatBN7.21015,215,824 - 15,218,937 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,215,824 - 15,220,931 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1019,955,596 - 19,958,670 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01019,444,475 - 19,447,549 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01014,943,755 - 14,946,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_5.01015,376,461 - 15,379,606 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,462,935 - 15,466,009 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11015,463,985 - 15,467,059 (-)NCBI
Celera1014,883,630 - 14,886,704 (-)NCBICelera
Cytogenetic Map10q12NCBI
PDIA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816283,164 - 287,215 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16283,164 - 287,215 (+)EnsemblGRCh38hg38GRCh38
GRCh3716333,164 - 337,215 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616273,119 - 277,210 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416273,208 - 277,210NCBI
Celera16533,017 - 537,108 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16251,360 - 255,512 (+)NCBIHuRef
CHM1_116333,055 - 337,171 (+)NCBICHM1_1
T2T-CHM13v2.016278,036 - 282,088 (+)NCBIT2T-CHM13v2.0
Pdia2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391726,414,973 - 26,418,108 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1726,414,973 - 26,418,061 (-)EnsemblGRCm39 Ensembl
GRCm381726,195,999 - 26,199,134 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1726,195,999 - 26,199,087 (-)EnsemblGRCm38mm10GRCm38
MGSCv371726,332,944 - 26,336,032 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361725,923,599 - 25,926,687 (-)NCBIMGSCv36mm8
Celera1726,729,757 - 26,732,844 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1713.07NCBI
Pdia2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544216,898,635 - 16,901,799 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544216,898,563 - 16,901,867 (-)NCBIChiLan1.0ChiLan1.0
PDIA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218501,336 - 506,685 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,294,232 - 4,298,939 (+)NCBINHGRI_mPanPan1
PanPan1.116273,692 - 278,014 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16273,764 - 277,914 (+)Ensemblpanpan1.1panPan2
PDIA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1640,218,566 - 40,221,924 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl640,218,550 - 40,231,402 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha641,482,205 - 41,485,425 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,560,945 - 40,564,168 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl640,560,945 - 40,564,149 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1640,249,209 - 40,252,422 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,210,283 - 40,213,487 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,688,729 - 40,691,944 (-)NCBIUU_Cfam_GSD_1.0
Pdia2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,536,174 - 112,539,335 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501634,118 - 637,000 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501634,034 - 637,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDIA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,394,058 - 41,397,687 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,394,267 - 41,397,547 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2341,030,474 - 41,033,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PDIA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15229,523 - 233,298 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5229,607 - 233,200 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606830,943,512 - 30,947,245 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdia2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249131,135,536 - 1,138,819 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249131,135,498 - 1,138,900 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pdia2
5 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:87
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000027726
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634329Pia15Pristane induced arthritis QTL 153.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10124158324Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
1576304Schws7Schwannoma susceptibility QTL 70.0115nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)10476552719816042Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402717245662Rat
737820Alc9Alcohol consumption QTL 92.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10514402719233348Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10615418215990232Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000099303   ⟹   ENSRNOP00000085020
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1015,215,824 - 15,220,931 (-)Ensembl
RefSeq Acc Id: NM_001105775   ⟹   NP_001099245
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,720,301 - 15,723,375 (-)NCBI
mRatBN7.21015,215,824 - 15,218,899 (-)NCBI
Rnor_5.01015,376,461 - 15,379,606 (-)NCBI
RGSC_v3.41015,462,935 - 15,466,009 (-)RGD
Celera1014,883,630 - 14,886,704 (-)RGD
Sequence:
RefSeq Acc Id: XM_039085368   ⟹   XP_038941296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,720,301 - 15,723,386 (-)NCBI
mRatBN7.21015,215,826 - 15,218,937 (-)NCBI
RefSeq Acc Id: XM_039085369   ⟹   XP_038941297
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,720,301 - 15,723,308 (-)NCBI
mRatBN7.21015,215,826 - 15,218,835 (-)NCBI
RefSeq Acc Id: XR_005489718
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81015,720,301 - 15,723,386 (-)NCBI
mRatBN7.21015,215,824 - 15,218,937 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001099245 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941296 (Get FASTA)   NCBI Sequence Viewer  
  XP_038941297 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03998 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000085020
  ENSRNOP00000085020.1
Reference Protein Sequences
RefSeq Acc Id: NP_001099245   ⟸   NM_001105775
- Peptide Label: precursor
- UniProtKB: A0A8I6A0T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038941296   ⟸   XM_039085368
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038941297   ⟸   XM_039085369
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000085020   ⟸   ENSRNOT00000099303
Protein Domains
Thioredoxin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305164 AgrOrtholog
BioCyc Gene G2FUF-25724 BioCyc
Ensembl Genes ENSRNOG00000063310 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000099303 ENTREZGENE
  ENSRNOT00000099303.1 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Prot_disulphide_isomerase UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
  Thioredoxin_CS UniProtKB/TrEMBL
  Thioredoxin_domain UniProtKB/TrEMBL
KEGG Report rno:287164 UniProtKB/TrEMBL
NCBI Gene 287164 ENTREZGENE
PANTHER PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
  PROTEIN DISULFIDE-ISOMERASE A2 UniProtKB/TrEMBL
Pfam Thioredoxin UniProtKB/TrEMBL
  Thioredoxin_6 UniProtKB/TrEMBL
PhenoGen Pdia2 PhenoGen
PRINTS THIOREDOXIN UniProtKB/TrEMBL
PROSITE THIOREDOXIN_1 UniProtKB/TrEMBL
  THIOREDOXIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000063310 RatGTEx
Superfamily-SCOP SSF52833 UniProtKB/TrEMBL
UniProt A0A8I6A0T0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-10 Pdia2  protein disulfide isomerase family A, member 2  Pdia2  protein disulfide isomerase associated 2   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Pdia2  protein disulfide isomerase associated 2   Pdia2_predicted  protein disulfide isomerase associated 2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Pdia2_predicted  protein disulfide isomerase associated 2 (predicted)  Pdip_predicted  protein disulfide isomerase, pancreatic (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Pdip_predicted  protein disulfide isomerase, pancreatic (predicted)      Symbol and Name status set to approved 70820 APPROVED