Rbm5 (RNA binding motif protein 5) - Rat Genome Database

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Gene: Rbm5 (RNA binding motif protein 5) Rattus norvegicus
Analyze
Symbol: Rbm5
Name: RNA binding motif protein 5
RGD ID: 1305059
Description: Predicted to enable mRNA binding activity. Predicted to be involved in positive regulation of apoptotic process; regulation of alternative mRNA splicing, via spliceosome; and spliceosomal complex assembly. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human RBM5 (RNA binding motif protein 5); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC300996; RNA-binding motif protein 5; RNA-binding protein 5
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,298,866 - 117,328,107 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8117,299,084 - 117,327,706 (-)EnsemblGRCr8
mRatBN7.28108,420,220 - 108,449,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,420,222 - 108,449,430 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8114,047,280 - 114,075,878 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,246,441 - 112,275,040 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,089,217 - 110,117,816 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,502,941 - 116,532,178 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,502,937 - 116,532,169 (-)Ensemblrn6Rnor6.0
Rnor_5.08115,857,578 - 115,886,811 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48112,995,731 - 113,024,356 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8107,726,813 - 107,755,403 (-)NCBICelera
RGSC_v3.18113,015,442 - 113,042,767 (-)NCBI
Cytogenetic Map8q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-trinitrotoluene  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bilirubin IXalpha  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
capsaicin  (EXP)
carbon nanotube  (ISO)
chloroprene  (EXP)
chlorpyrifos  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
copper(II) sulfate  (ISO)
dibutyl phthalate  (EXP)
diphenylcyclopropenone  (ISO)
diuron  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
ethanol  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
gentamycin  (EXP)
GSK-J4  (ISO)
inulin  (ISO)
isobutanol  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methamphetamine  (ISO)
methidathion  (ISO)
methimazole  (EXP)
nimesulide  (EXP)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
resveratrol  (EXP,ISO)
selenium atom  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium fluoride  (ISO)
Soman  (EXP)
succimer  (ISO)
sulfadimethoxine  (EXP)
thapsigargin  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO,ISS)
spliceosomal complex  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:18840686   PMID:18951082   PMID:22681889   PMID:24178303   PMID:25578565   PMID:28818525  


Genomics

Comparative Map Data
Rbm5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,298,866 - 117,328,107 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8117,299,084 - 117,327,706 (-)EnsemblGRCr8
mRatBN7.28108,420,220 - 108,449,481 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,420,222 - 108,449,430 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8114,047,280 - 114,075,878 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,246,441 - 112,275,040 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,089,217 - 110,117,816 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,502,941 - 116,532,178 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,502,937 - 116,532,169 (-)Ensemblrn6Rnor6.0
Rnor_5.08115,857,578 - 115,886,811 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48112,995,731 - 113,024,356 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8107,726,813 - 107,755,403 (-)NCBICelera
RGSC_v3.18113,015,442 - 113,042,767 (-)NCBI
Cytogenetic Map8q32NCBI
RBM5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,088,919 - 50,119,021 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,088,919 - 50,119,021 (+)Ensemblhg38GRCh38
GRCh37350,126,352 - 50,156,454 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,101,372 - 50,131,397 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34350,101,371 - 50,131,394NCBI
Celera350,099,217 - 50,129,214 (+)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,182,063 - 50,212,095 (+)NCBIHuRef
CHM1_1350,078,630 - 50,108,661 (+)NCBICHM1_1
T2T-CHM13v2.0350,118,235 - 50,148,343 (+)NCBIT2T-CHM13v2.0
Rbm5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,617,694 - 107,648,228 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,617,570 - 107,648,195 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389107,740,495 - 107,771,007 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,740,371 - 107,770,996 (-)Ensemblmm10GRCm38
MGSCv379107,642,826 - 107,673,333 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369107,598,601 - 107,629,077 (-)NCBIMGSCv36mm8
Celera9107,348,392 - 107,378,792 (-)NCBICelera
Cytogenetic Map9F1NCBI
cM Map959.07NCBI
Rbm5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,929,043 - 1,956,812 (+)Ensembl
ChiLan1.0NW_0049555321,929,540 - 1,957,297 (+)NCBIChiLan1.0ChiLan1.0
RBM5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,071,311 - 50,101,662 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,076,086 - 50,106,440 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,017,199 - 50,047,248 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,251,889 - 51,282,338 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,251,911 - 51,282,338 (+)EnsemblpanPan2panpan1.1
RBM5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,198,706 - 39,227,856 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,199,154 - 39,227,769 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2039,119,724 - 39,148,868 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02039,555,377 - 39,584,534 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,555,380 - 39,584,485 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,922,571 - 38,951,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,326,851 - 39,356,027 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,606,480 - 39,635,659 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rbm5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,879,399 - 64,911,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,639,880 - 1,672,282 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,639,919 - 1,672,143 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBM5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,579,983 - 32,612,710 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11332,579,780 - 32,612,716 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,759,830 - 35,791,851 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBM5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,473,623 - 11,505,251 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,473,494 - 11,507,096 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041155,484,644 - 155,516,643 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbm5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,969,065 - 4,001,335 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247303,969,445 - 4,000,587 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rbm5
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1899,063,296 - 99,092,143 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rbm5
360 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:38
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000024529
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8111249511117802327Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001100548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001433317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC089976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ235011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000024529   ⟹   ENSRNOP00000024529
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8117,299,084 - 117,327,706 (-)Ensembl
mRatBN7.2 Ensembl8108,420,222 - 108,449,430 (-)Ensembl
Rnor_6.0 Ensembl8116,503,160 - 116,531,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085364   ⟹   ENSRNOP00000072378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8117,299,084 - 117,326,019 (-)Ensembl
mRatBN7.2 Ensembl8108,420,224 - 108,447,381 (-)Ensembl
Rnor_6.0 Ensembl8116,502,937 - 116,532,169 (-)Ensembl
RefSeq Acc Id: NM_001100548   ⟹   NP_001094018
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,299,081 - 117,327,706 (-)NCBI
mRatBN7.28108,420,438 - 108,449,068 (-)NCBI
Rnor_6.08116,503,159 - 116,531,784 (-)NCBI
Rnor_5.08115,857,578 - 115,886,811 (-)NCBI
RGSC_v3.48112,995,731 - 113,024,356 (-)RGD
Celera8107,726,813 - 107,755,403 (-)RGD
Sequence:
RefSeq Acc Id: XM_006243738   ⟹   XP_006243800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,298,866 - 117,328,055 (-)NCBI
mRatBN7.28108,420,220 - 108,449,455 (-)NCBI
Rnor_6.08116,502,941 - 116,532,178 (-)NCBI
Rnor_5.08115,857,578 - 115,886,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006243739   ⟹   XP_006243801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,298,866 - 117,328,107 (-)NCBI
mRatBN7.28108,420,220 - 108,449,481 (-)NCBI
Rnor_6.08116,502,941 - 116,532,178 (-)NCBI
Rnor_5.08115,857,578 - 115,886,811 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039081222   ⟹   XP_038937150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,298,866 - 117,327,607 (-)NCBI
mRatBN7.28108,420,220 - 108,448,891 (-)NCBI
RefSeq Acc Id: XM_039081223   ⟹   XP_038937151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,298,866 - 117,323,431 (-)NCBI
mRatBN7.28108,420,220 - 108,444,798 (-)NCBI
RefSeq Acc Id: XM_063265245   ⟹   XP_063121315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88117,304,908 - 117,327,744 (-)NCBI
RefSeq Acc Id: NP_001094018   ⟸   NM_001100548
- UniProtKB: B2GV05 (UniProtKB/Swiss-Prot),   A0A8L2R731 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006243801   ⟸   XM_006243739
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006243800   ⟸   XM_006243738
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000072378   ⟸   ENSRNOT00000085364
Ensembl Acc Id: ENSRNOP00000024529   ⟸   ENSRNOT00000024529
RefSeq Acc Id: XP_038937150   ⟸   XM_039081222
- Peptide Label: isoform X1
- UniProtKB: B2GV05 (UniProtKB/Swiss-Prot),   A0A8L2R731 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038937151   ⟸   XM_039081223
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121315   ⟸   XM_063265245
- Peptide Label: isoform X3
Protein Domains
C2H2-type   G-patch   RanBP2-type   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2GV05-F1-model_v2 AlphaFold B2GV05 1-815 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696293
Promoter ID:EPDNEW_R6805
Type:multiple initiation site
Name:Rbm5_1
Description:RNA binding motif protein 5
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08116,532,152 - 116,532,212EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305059 AgrOrtholog
BioCyc Gene G2FUF-29176 BioCyc
Ensembl Genes ENSRNOG00000018153 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000024529 ENTREZGENE
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot
  Zinc finger, RanBP2-type UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317347 IMAGE-MGC_LOAD
  IMAGE:9102173 IMAGE-MGC_LOAD
InterPro G_patch_dom UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot
  OCRE UniProtKB/Swiss-Prot
  RBD_domain_sf UniProtKB/Swiss-Prot
  RBM5_RRM1 UniProtKB/Swiss-Prot
  RBM5_RRM2 UniProtKB/Swiss-Prot
  RRM_dom UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
  Znf_RanBP2 UniProtKB/Swiss-Prot
  Znf_RanBP2_sf UniProtKB/Swiss-Prot
KEGG Report rno:300996 UniProtKB/Swiss-Prot
MGC_CLONE MGC:109385 IMAGE-MGC_LOAD
  MGC:187934 IMAGE-MGC_LOAD
NCBI Gene 300996 ENTREZGENE
PANTHER PTHR13948:SF21 UniProtKB/Swiss-Prot
  RNA-BINDING PROTEIN UniProtKB/Swiss-Prot
Pfam G-patch UniProtKB/Swiss-Prot
  OCRE UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot
  zf-RanBP UniProtKB/Swiss-Prot
PhenoGen Rbm5 PhenoGen
PROSITE G_PATCH UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot
  ZF_RANBP2_1 UniProtKB/Swiss-Prot
  ZF_RANBP2_2 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000018153 RatGTEx
SMART G_patch UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot
  ZnF_RBZ UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot
  SSF90209 UniProtKB/Swiss-Prot
UniProt A0A8L2QCT2_RAT UniProtKB/TrEMBL
  A0A8L2R731 ENTREZGENE, UniProtKB/TrEMBL
  B2GV05 ENTREZGENE
  Q5EB71_RAT UniProtKB/TrEMBL
  RBM5_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Rbm5  RNA binding motif protein 5  Rbm5_predicted  RNA binding motif protein 5 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Rbm5_predicted  RNA binding motif protein 5 (predicted)      Symbol and Name status set to approved 70820 APPROVED