Stil (STIL, centriolar assembly protein) - Rat Genome Database

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Gene: Stil (STIL, centriolar assembly protein) Rattus norvegicus
Analyze
Symbol: Stil
Name: STIL, centriolar assembly protein
RGD ID: 1304972
Description: Predicted to enable identical protein binding activity. Predicted to be involved in several processes, including microtubule cytoskeleton organization; positive regulation of cell cycle process; and protein localization to centrosome. Predicted to act upstream of or within several processes, including chordate embryonic development; embryonic organ development; and non-motile cilium assembly. Predicted to be located in centriole; centrosome; and cytoplasm. Predicted to be part of procentriole replication complex. Predicted to be active in microtubule organizing center. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 7. Orthologous to human STIL (STIL centriolar assembly protein); PARTICIPATES IN Hedgehog signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC313506; Scl/Tal1 interrupting locus; Sil; Tal1 interrupting locus
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,757,598 - 133,810,493 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5133,760,417 - 133,810,494 (+)EnsemblGRCr8
mRatBN7.25128,520,837 - 128,573,732 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,520,953 - 128,573,730 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5131,210,029 - 131,256,212 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05132,939,676 - 132,985,857 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05132,961,368 - 133,007,550 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,819,302 - 133,851,362 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,819,726 - 133,851,416 (+)Ensemblrn6Rnor6.0
Rnor_5.05137,610,633 - 137,642,902 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45135,365,417 - 135,416,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5127,172,659 - 127,218,734 (+)NCBICelera
RGSC_v3.15135,406,575 - 135,421,496 (+)NCBI
Cytogenetic Map5q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-palmitoylglycerol  (ISO)
4,4'-sulfonyldiphenol  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
chloroprene  (ISO)
chromium(6+)  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
diallyl trisulfide  (ISO)
dichloroacetic acid  (ISO)
diclofenac  (EXP)
dioxygen  (ISO)
diquat  (ISO)
disodium selenite  (ISO)
Enterolactone  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
lidocaine  (EXP)
methyl methanesulfonate  (ISO)
N(4)-hydroxycytidine  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
resveratrol  (ISO)
senecionine  (EXP)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
SP2509  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
urethane  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:10385121   PMID:16024801   PMID:21399614   PMID:22020124   PMID:22349705   PMID:24853807   PMID:25385835   PMID:26188084  


Genomics

Comparative Map Data
Stil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85133,757,598 - 133,810,493 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5133,760,417 - 133,810,494 (+)EnsemblGRCr8
mRatBN7.25128,520,837 - 128,573,732 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5128,520,953 - 128,573,730 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx5131,210,029 - 131,256,212 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05132,939,676 - 132,985,857 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05132,961,368 - 133,007,550 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.05133,819,302 - 133,851,362 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5133,819,726 - 133,851,416 (+)Ensemblrn6Rnor6.0
Rnor_5.05137,610,633 - 137,642,902 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45135,365,417 - 135,416,566 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5127,172,659 - 127,218,734 (+)NCBICelera
RGSC_v3.15135,406,575 - 135,421,496 (+)NCBI
Cytogenetic Map5q35NCBI
STIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38147,250,139 - 47,314,896 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl147,250,139 - 47,314,892 (-)Ensemblhg38GRCh38
GRCh37147,715,811 - 47,780,568 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36147,488,398 - 47,552,406 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34147,427,868 - 47,491,839NCBI
Celera146,002,077 - 46,066,092 (-)NCBICelera
Cytogenetic Map1p33NCBI
HuRef145,832,383 - 45,896,402 (-)NCBIHuRef
CHM1_1147,832,692 - 47,896,668 (-)NCBICHM1_1
T2T-CHM13v2.0147,128,555 - 47,212,236 (-)NCBIT2T-CHM13v2.0
Stil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394114,857,287 - 114,900,404 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4114,857,356 - 114,900,393 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384115,000,108 - 115,043,203 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4115,000,159 - 115,043,196 (+)Ensemblmm10GRCm38
MGSCv374114,672,723 - 114,715,808 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364114,498,132 - 114,540,831 (+)NCBIMGSCv36mm8
Celera4113,747,551 - 113,790,438 (+)NCBICelera
Cytogenetic Map4D1NCBI
cM Map452.73NCBI
Stil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546411,228,667 - 11,289,648 (+)Ensembl
ChiLan1.0NW_00495546411,213,265 - 11,288,648 (+)NCBIChiLan1.0ChiLan1.0
STIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21179,469,067 - 179,553,117 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11178,610,801 - 178,694,897 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,551,592 - 46,639,668 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1148,072,728 - 48,137,071 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl148,072,728 - 48,137,071 (-)EnsemblpanPan2panpan1.1
STIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11513,369,292 - 13,431,677 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1513,371,925 - 13,430,951 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1513,521,394 - 13,583,814 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01513,518,078 - 13,580,791 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1513,518,085 - 13,580,774 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11513,318,105 - 13,380,489 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01513,385,842 - 13,448,489 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01513,455,340 - 13,517,991 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505862,254,037 - 62,322,675 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647428,079,492 - 28,131,198 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647428,079,114 - 28,131,214 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6164,197,600 - 164,265,818 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.16164,197,511 - 164,266,615 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26151,758,969 - 151,813,764 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12085,600,171 - 85,662,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2085,604,539 - 85,662,333 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603331,417,153 - 31,498,017 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stil
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248595,510,384 - 5,572,228 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248595,510,442 - 5,572,122 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stil
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1141,538,178 - 41,584,869 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stil
361 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:128
Interacting mature miRNAs:135
Transcripts:ENSRNOT00000010410
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)5102105698152749382Rat
2303586Gluco52Glucose level QTL 522blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)5100826632145826632Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5116702075161702075Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5130678987145274255Rat
7365049Bp359Blood pressure QTL 359arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133308734140009902Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5112142946157142946Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5112142946157142946Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5110770739155770739Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5112142946157142946Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)592583776137583776Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)598972960143972960Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)592583776137583776Rat
2303618Vencon1Ventilatory control QTL 13.8respiration trait (VT:0001943)oxygen consumption (CMO:0002169)5100826632145826632Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5111236572156236572Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)594034903139034903Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5114131300159131300Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5125969677156302135Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5112142946157142946Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5116702075161702075Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5112142946157142946Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5116702075161702075Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5116702075161702075Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)589369373134369373Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5114131300159131300Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)592881678137881678Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)5104262817153890625Rat

Markers in Region
AW535880  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25128,562,572 - 128,562,733 (+)MAPPERmRatBN7.2
Rnor_6.05133,840,204 - 133,840,364NCBIRnor6.0
Rnor_5.05137,631,744 - 137,631,904UniSTSRnor5.0
RGSC_v3.45135,406,292 - 135,406,452UniSTSRGSC3.4
Celera5127,207,996 - 127,208,156UniSTS
RH 3.4 Map5831.9UniSTS
Cytogenetic Map5q36UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 161 91 90 59 87 59 6 347 186 11 140 78 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000081075   ⟹   ENSRNOP00000075706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5133,760,417 - 133,810,494 (+)Ensembl
mRatBN7.2 Ensembl5128,520,953 - 128,573,730 (+)Ensembl
Rnor_6.0 Ensembl5133,819,726 - 133,851,416 (+)Ensembl
RefSeq Acc Id: NM_001399206   ⟹   NP_001386135
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,757,631 - 133,810,493 (+)NCBI
mRatBN7.25128,520,865 - 128,573,730 (+)NCBI
RefSeq Acc Id: XM_039111180   ⟹   XP_038967108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,757,882 - 133,810,491 (+)NCBI
mRatBN7.25128,521,102 - 128,573,732 (+)NCBI
RefSeq Acc Id: XM_039111181   ⟹   XP_038967109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,761,788 - 133,810,491 (+)NCBI
mRatBN7.25128,525,312 - 128,573,732 (+)NCBI
RefSeq Acc Id: XM_039111182   ⟹   XP_038967110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,761,788 - 133,810,491 (+)NCBI
mRatBN7.25128,525,735 - 128,573,732 (+)NCBI
RefSeq Acc Id: XM_063287731   ⟹   XP_063143801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85133,757,598 - 133,798,163 (+)NCBI
Ensembl Acc Id: ENSRNOP00000075706   ⟸   ENSRNOT00000081075
RefSeq Acc Id: XP_038967108   ⟸   XM_039111180
- Peptide Label: isoform X1
- UniProtKB: A0A0G2KB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967109   ⟸   XM_039111181
- Peptide Label: isoform X2
- UniProtKB: A0A0G2KB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967110   ⟸   XM_039111182
- Peptide Label: isoform X3
- UniProtKB: A0A0G2KB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386135   ⟸   NM_001399206
- UniProtKB: A0A0G2KB96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143801   ⟸   XM_063287731
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KB96-F1-model_v2 AlphaFold A0A0G2KB96 1-1037 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304972 AgrOrtholog
BioCyc Gene G2FUF-40306 BioCyc
Ensembl Genes ENSRNOG00000057760 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000081075 ENTREZGENE
  ENSRNOT00000081075.3 UniProtKB/TrEMBL
InterPro Sil UniProtKB/TrEMBL
  STIL_CC UniProtKB/TrEMBL
  STIL_N UniProtKB/TrEMBL
NCBI Gene 313506 ENTREZGENE
PANTHER PTHR15128 UniProtKB/TrEMBL
  SCL-INTERRUPTING LOCUS PROTEIN UniProtKB/TrEMBL
Pfam CC_STIL UniProtKB/TrEMBL
  STIL_N UniProtKB/TrEMBL
PhenoGen Stil PhenoGen
RatGTEx ENSRNOG00000057760 RatGTEx
UniProt A0A0G2KB96 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Stil  STIL, centriolar assembly protein  Stil  Scl/Tal1 interrupting locus  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Stil  Scl/Tal1 interrupting locus   Stil_predicted  Scl/Tal1 interrupting locus (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Stil_predicted  Scl/Tal1 interrupting locus (predicted)  Sil_predicted  Tal1 interrupting locus (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Sil_predicted  Tal1 interrupting locus (predicted)      Symbol and Name status set to approved 70820 APPROVED