Fndc3a (fibronectin type III domain containing 3a) - Rat Genome Database

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Gene: Fndc3a (fibronectin type III domain containing 3a) Rattus norvegicus
Analyze
Symbol: Fndc3a
Name: fibronectin type III domain containing 3a
RGD ID: 1304736
Description: Predicted to be involved in spermatid development. Predicted to act upstream of or within Sertoli cell development; cell-cell adhesion; and fertilization. Predicted to be located in several cellular components, including Golgi apparatus; acrosomal vesicle; and vesicle membrane. Predicted to be active in cytoplasm and membrane. Orthologous to human FNDC3A (fibronectin type III domain containing 3A); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: fibronectin type III domain containing 3; fibronectin type-III domain-containing protein 3A; Fndc3; LOC306022
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,099,510 - 54,276,963 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1554,099,510 - 54,276,407 (-)EnsemblGRCr8
mRatBN7.21547,689,909 - 47,867,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1547,689,919 - 47,866,784 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1551,826,854 - 51,970,141 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01552,938,415 - 53,081,704 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01549,780,815 - 49,921,305 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01554,378,865 - 54,582,954 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,381,044 - 54,528,480 (-)Ensemblrn6Rnor6.0
Rnor_5.01558,102,190 - 58,306,554 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41553,124,740 - 53,312,367 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1547,348,000 - 47,488,015 (-)NCBICelera
RGSC_v3.11553,140,516 - 53,328,793 (-)NCBI
Cytogenetic Map15p11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1759682   PMID:2164218   PMID:16904100   PMID:18218838   PMID:19946888   PMID:22658674  


Genomics

Comparative Map Data
Fndc3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,099,510 - 54,276,963 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1554,099,510 - 54,276,407 (-)EnsemblGRCr8
mRatBN7.21547,689,909 - 47,867,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1547,689,919 - 47,866,784 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1551,826,854 - 51,970,141 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01552,938,415 - 53,081,704 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01549,780,815 - 49,921,305 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01554,378,865 - 54,582,954 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,381,044 - 54,528,480 (-)Ensemblrn6Rnor6.0
Rnor_5.01558,102,190 - 58,306,554 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41553,124,740 - 53,312,367 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1547,348,000 - 47,488,015 (-)NCBICelera
RGSC_v3.11553,140,516 - 53,328,793 (-)NCBI
Cytogenetic Map15p11NCBI
FNDC3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,975,291 - 49,209,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,975,912 - 49,209,779 (+)Ensemblhg38GRCh38
GRCh371349,550,048 - 49,783,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,448,049 - 48,681,916 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341348,448,939 - 48,681,729NCBI
Celera1330,605,901 - 30,839,799 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,344,082 - 30,577,725 (+)NCBIHuRef
CHM1_11349,517,625 - 49,751,465 (+)NCBICHM1_1
T2T-CHM13v2.01348,193,984 - 48,431,085 (+)NCBIT2T-CHM13v2.0
Fndc3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391472,775,388 - 72,948,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1472,775,386 - 72,947,443 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381472,537,948 - 72,710,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1472,537,946 - 72,710,003 (-)Ensemblmm10GRCm38
MGSCv371472,937,760 - 73,109,810 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361471,273,033 - 71,445,085 (-)NCBIMGSCv36mm8
Celera1470,075,554 - 70,248,633 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1437.62NCBI
Fndc3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,553,892 - 2,696,744 (+)Ensembl
ChiLan1.0NW_0049554312,553,311 - 2,696,596 (+)NCBIChiLan1.0ChiLan1.0
FNDC3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,419,146 - 50,647,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,070,446 - 49,298,260 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,119,740 - 30,347,544 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,820,120 - 49,047,770 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,820,018 - 49,049,274 (+)EnsemblpanPan2panpan1.1
FNDC3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,524,173 - 2,700,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,526,381 - 2,700,780 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha222,553,053 - 2,728,963 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0222,513,419 - 2,688,986 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,513,429 - 2,688,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,423,463 - 2,599,487 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,470,964 - 2,646,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,491,255 - 2,667,301 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fndc3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,670,041 - 158,828,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,154,599 - 2,312,862 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,154,672 - 2,312,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNDC3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,564,280 - 18,757,869 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11118,564,280 - 18,757,742 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,971,020 - 19,002,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FNDC3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,902,353 - 27,121,248 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl326,902,353 - 27,121,008 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605716,770,535 - 16,992,110 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fndc3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,501,411 - 5,716,737 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247485,503,053 - 5,716,734 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Fndc3a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11251,952,913 - 52,114,721 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fndc3a
1330 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:307
Count of miRNA genes:196
Interacting mature miRNAs:231
Transcripts:ENSRNOT00000066888
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300144Rf23Renal function QTL 233.61renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1544806773104695021Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)153185580392671517Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)154367724488677244Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152852773273527732Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)1525285835104695021Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)1525285835104695021Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151915576287086765Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)154046315285463152Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151492659471614418Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)152233635167336351Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)154367724488677244Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)154367724488677244Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)1525285835104695021Rat
7411725Strs7Sensitivity to stroke QTL 73.8cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)154446544756583797Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)154367724488677244Rat

Markers in Region
D15Rat16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21547,750,714 - 47,750,839 (+)MAPPERmRatBN7.2
Rnor_6.01554,439,669 - 54,439,793NCBIRnor6.0
Rnor_5.01558,162,994 - 58,163,118UniSTSRnor5.0
RGSC_v3.41553,185,540 - 53,185,665RGDRGSC3.4
RGSC_v3.41553,185,541 - 53,185,665UniSTSRGSC3.4
Celera1547,406,298 - 47,406,422UniSTS
RGSC_v3.11553,201,320 - 53,201,445RGD
SHRSP x BN Map1533.4699UniSTS
SHRSP x BN Map1533.4699RGD
FHH x ACI Map1546.36RGD
Cytogenetic Map15p11UniSTS
D15Got110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21547,854,669 - 47,854,874 (+)MAPPERmRatBN7.2
Rnor_6.01554,569,662 - 54,569,866NCBIRnor6.0
Rnor_6.01554,554,814 - 54,555,018NCBIRnor6.0
Rnor_5.01558,293,473 - 58,293,677UniSTSRnor5.0
Rnor_5.01558,278,625 - 58,278,829UniSTSRnor5.0
RGSC_v3.41553,300,390 - 53,300,594UniSTSRGSC3.4
RGSC_v3.41553,300,389 - 53,300,594RGDRGSC3.4
Celera1547,509,094 - 47,509,298UniSTS
RGSC_v3.11553,316,169 - 53,316,374RGD
Cytogenetic Map15p11UniSTS
RH138547  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21547,692,969 - 47,693,118 (+)MAPPERmRatBN7.2
Rnor_6.01554,381,926 - 54,382,074NCBIRnor6.0
Rnor_5.01558,105,251 - 58,105,399UniSTSRnor5.0
RGSC_v3.41553,127,798 - 53,127,946UniSTSRGSC3.4
Celera1547,348,882 - 47,349,030UniSTS
Cytogenetic Map15p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 166 91 90 59 93 59 6 359 193 11 146 83 92 31 18 18

Sequence


Ensembl Acc Id: ENSRNOT00000066888   ⟹   ENSRNOP00000062773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,099,510 - 54,229,483 (-)Ensembl
mRatBN7.2 Ensembl1547,691,523 - 47,866,784 (-)Ensembl
Rnor_6.0 Ensembl1554,381,044 - 54,528,480 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096165   ⟹   ENSRNOP00000087923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,099,510 - 54,169,255 (-)Ensembl
mRatBN7.2 Ensembl1547,691,523 - 47,820,382 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000100330   ⟹   ENSRNOP00000093978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,099,510 - 54,255,144 (-)Ensembl
mRatBN7.2 Ensembl1547,691,523 - 47,866,784 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101367   ⟹   ENSRNOP00000096946
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,099,510 - 54,229,221 (-)Ensembl
mRatBN7.2 Ensembl1547,689,919 - 47,759,433 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111875   ⟹   ENSRNOP00000082902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1554,099,510 - 54,276,407 (-)Ensembl
mRatBN7.2 Ensembl1547,691,523 - 47,866,784 (-)Ensembl
RefSeq Acc Id: NM_001412039   ⟹   NP_001398968
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,276,407 (-)NCBI
mRatBN7.21547,689,909 - 47,866,807 (-)NCBI
RefSeq Acc Id: XM_006252296   ⟹   XP_006252358
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,255,901 (-)NCBI
mRatBN7.21547,689,909 - 47,846,054 (-)NCBI
Rnor_6.01554,378,865 - 54,542,524 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252297   ⟹   XP_006252359
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,275,983 (-)NCBI
mRatBN7.21547,689,909 - 47,866,408 (-)NCBI
Rnor_6.01554,378,865 - 54,566,481 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252298   ⟹   XP_006252360
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,276,963 (-)NCBI
mRatBN7.21547,689,909 - 47,867,354 (-)NCBI
Rnor_6.01554,378,865 - 54,582,954 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252299   ⟹   XP_006252361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,229,356 (-)NCBI
mRatBN7.21547,689,909 - 47,821,615 (-)NCBI
Rnor_6.01554,378,865 - 54,518,427 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252300   ⟹   XP_006252362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,212,759 (-)NCBI
mRatBN7.21547,689,909 - 47,802,969 (-)NCBI
Rnor_6.01554,378,865 - 54,494,188 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006252301   ⟹   XP_006252363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,169,597 (-)NCBI
mRatBN7.21547,689,909 - 47,759,991 (-)NCBI
Rnor_6.01554,378,865 - 54,450,715 (-)NCBI
Rnor_5.01558,102,190 - 58,306,554 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039093358   ⟹   XP_038949286
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81554,099,510 - 54,233,970 (-)NCBI
mRatBN7.21547,689,909 - 47,824,369 (-)NCBI
RefSeq Acc Id: XP_006252360   ⟸   XM_006252298
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVT2 (UniProtKB/TrEMBL),   A6HTP1 (UniProtKB/TrEMBL),   D3ZEA0 (UniProtKB/TrEMBL),   D3ZUE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252359   ⟸   XM_006252297
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVT2 (UniProtKB/TrEMBL),   A6HTP1 (UniProtKB/TrEMBL),   D3ZEA0 (UniProtKB/TrEMBL),   D3ZUE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252358   ⟸   XM_006252296
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVT2 (UniProtKB/TrEMBL),   A6HTP1 (UniProtKB/TrEMBL),   D3ZEA0 (UniProtKB/TrEMBL),   D3ZUE6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252361   ⟸   XM_006252299
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A5F5 (UniProtKB/TrEMBL),   A0A8I6AXU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252362   ⟸   XM_006252300
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AXU9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006252363   ⟸   XM_006252301
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AMX6 (UniProtKB/TrEMBL),   A0A8I6AXU9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000062773   ⟸   ENSRNOT00000066888
RefSeq Acc Id: XP_038949286   ⟸   XM_039093358
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AXU9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000082902   ⟸   ENSRNOT00000111875
Ensembl Acc Id: ENSRNOP00000096946   ⟸   ENSRNOT00000101367
Ensembl Acc Id: ENSRNOP00000087923   ⟸   ENSRNOT00000096165
Ensembl Acc Id: ENSRNOP00000093978   ⟸   ENSRNOT00000100330
RefSeq Acc Id: NP_001398968   ⟸   NM_001412039
- UniProtKB: A0A8I5ZVT2 (UniProtKB/TrEMBL),   A6HTP1 (UniProtKB/TrEMBL),   D3ZEA0 (UniProtKB/TrEMBL),   D3ZUE6 (UniProtKB/TrEMBL)
Protein Domains
Fibronectin type-III

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZEA0-F1-model_v2 AlphaFold D3ZEA0 1-1170 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304736 AgrOrtholog
BioCyc Gene G2FUF-13182 BioCyc
Ensembl Genes ENSRNOG00000014478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000066888 ENTREZGENE
  ENSRNOT00000066888.5 UniProtKB/TrEMBL
  ENSRNOT00000096165 ENTREZGENE
  ENSRNOT00000096165.2 UniProtKB/TrEMBL
  ENSRNOT00000100330 ENTREZGENE
  ENSRNOT00000100330.2 UniProtKB/TrEMBL
  ENSRNOT00000101367.2 UniProtKB/TrEMBL
  ENSRNOT00000111875 ENTREZGENE
  ENSRNOT00000111875.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro E3_ligase_FN3/SPRY UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  FN_III UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
NCBI Gene 306022 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED UniProtKB/TrEMBL
  FIBRONECTIN TYPE III DOMAIN-CONTAINING 3BA-RELATED UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
PhenoGen Fndc3a PhenoGen
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014478 RatGTEx
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP FN_III-like UniProtKB/TrEMBL
UniProt A0A8I5ZVT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5F5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AXU9 ENTREZGENE, UniProtKB/TrEMBL
  A6HTP1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZEA0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUE6 ENTREZGENE
UniProt Secondary D3ZUE6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Fndc3a  fibronectin type III domain containing 3a   Fndc3a_predicted  fibronectin type III domain containing 3a (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Fndc3a_predicted  fibronectin type III domain containing 3a (predicted)  Fndc3_predicted  fibronectin type III domain containing 3 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Fndc3_predicted  fibronectin type III domain containing 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED