FNDC3A (fibronectin type III domain containing 3A) - Rat Genome Database

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Gene: FNDC3A (fibronectin type III domain containing 3A) Chlorocebus sabaeus
Analyze
Symbol: FNDC3A
Name: fibronectin type III domain containing 3A
RGD ID: 18480150
Description: INVOLVED IN cell-cell adhesion (ortholog); fertilization (ortholog); Sertoli cell development (ortholog); ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fibronectin type-III domain-containing protein 3A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,902,353 - 27,121,248 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl326,902,353 - 27,121,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,770,535 - 16,992,110 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
FNDC3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1326,902,353 - 27,121,248 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl326,902,353 - 27,121,008 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605716,770,535 - 16,992,110 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
FNDC3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381348,975,291 - 49,209,779 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1348,975,912 - 49,209,779 (+)EnsemblGRCh38hg38GRCh38
GRCh371349,550,048 - 49,783,915 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361348,448,049 - 48,681,916 (+)NCBINCBI36Build 36hg18NCBI36
Build 341348,448,939 - 48,681,729NCBI
Celera1330,605,901 - 30,839,799 (+)NCBICelera
Cytogenetic Map13q14.2NCBI
HuRef1330,344,082 - 30,577,725 (+)NCBIHuRef
CHM1_11349,517,625 - 49,751,465 (+)NCBICHM1_1
T2T-CHM13v2.01348,193,984 - 48,431,085 (+)NCBIT2T-CHM13v2.0
Fndc3a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391472,775,388 - 72,948,141 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1472,775,386 - 72,947,443 (-)EnsemblGRCm39 Ensembl
GRCm381472,537,948 - 72,710,701 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1472,537,946 - 72,710,003 (-)EnsemblGRCm38mm10GRCm38
MGSCv371472,937,760 - 73,109,810 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361471,273,033 - 71,445,085 (-)NCBIMGSCv36mm8
Celera1470,075,554 - 70,248,633 (-)NCBICelera
Cytogenetic Map14D2NCBI
cM Map1437.62NCBI
Fndc3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81554,099,510 - 54,276,963 (-)NCBIGRCr8
mRatBN7.21547,689,909 - 47,867,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1547,689,919 - 47,866,784 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1551,826,854 - 51,970,141 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01552,938,415 - 53,081,704 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01549,780,815 - 49,921,305 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01554,378,865 - 54,582,954 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1554,381,044 - 54,528,480 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01558,102,190 - 58,306,554 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41553,124,740 - 53,312,367 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11553,140,516 - 53,328,793 (-)NCBI
Celera1547,348,000 - 47,488,015 (-)NCBICelera
Cytogenetic Map15p11NCBI
Fndc3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554312,553,892 - 2,696,744 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554312,553,311 - 2,696,596 (+)NCBIChiLan1.0ChiLan1.0
FNDC3A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21450,419,146 - 50,647,201 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11349,070,446 - 49,298,260 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01330,119,740 - 30,347,544 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11348,820,120 - 49,047,770 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1348,820,018 - 49,049,274 (+)Ensemblpanpan1.1panPan2
FNDC3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1222,524,173 - 2,700,223 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl222,526,381 - 2,700,780 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha222,553,053 - 2,728,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0222,513,419 - 2,688,986 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl222,513,429 - 2,688,514 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1222,423,463 - 2,599,487 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0222,470,964 - 2,646,132 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0222,491,255 - 2,667,301 (-)NCBIUU_Cfam_GSD_1.0
Fndc3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945158,670,041 - 158,828,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365652,154,599 - 2,312,862 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365652,154,672 - 2,312,670 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FNDC3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1118,564,280 - 18,757,869 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11118,564,280 - 18,757,742 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21118,971,020 - 19,002,968 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Fndc3a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247485,501,411 - 5,716,737 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247485,503,053 - 5,716,734 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 36 5 60
Low 15
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000015830   ⟹   ENSCSAP00000013758
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl326,902,353 - 27,121,008 (+)Ensembl
RefSeq Acc Id: XM_007960391   ⟹   XP_007958582
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1326,903,073 - 27,121,248 (+)NCBI
Vero_WHO_p1.0NW_02366605716,770,709 - 16,991,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960392   ⟹   XP_007958583
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1326,902,353 - 27,121,248 (+)NCBI
Vero_WHO_p1.0NW_02366605716,770,712 - 16,992,110 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960393   ⟹   XP_007958584
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1326,981,820 - 27,121,248 (+)NCBI
Vero_WHO_p1.0NW_02366605716,770,535 - 16,961,787 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007960394   ⟹   XP_007958585
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1327,030,401 - 27,121,248 (+)NCBI
Vero_WHO_p1.0NW_02366605716,770,535 - 16,863,721 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007958582 (Get FASTA)   NCBI Sequence Viewer  
  XP_007958583 (Get FASTA)   NCBI Sequence Viewer  
  XP_007958584 (Get FASTA)   NCBI Sequence Viewer  
  XP_007958585 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000013758
  ENSCSAP00000013758.1
Reference Protein Sequences
RefSeq Acc Id: XP_007958583   ⟸   XM_007960392
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007958582   ⟸   XM_007960391
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RYR9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007958584   ⟸   XM_007960393
- Peptide Label: isoform X3
RefSeq Acc Id: XP_007958585   ⟸   XM_007960394
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCSAP00000013758   ⟸   ENSCSAT00000015830


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000017734 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000015830.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
KEGG Report csab:103214417 UniProtKB/TrEMBL
NCBI Gene FNDC3A ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED UniProtKB/TrEMBL
  FIBRONECTIN TYPE III DOMAIN-CONTAINING 3BA-RELATED UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
Superfamily-SCOP SSF49265 UniProtKB/TrEMBL
UniProt A0A0D9RYR9 ENTREZGENE, UniProtKB/TrEMBL