Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) - Rat Genome Database

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Gene: Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) Rattus norvegicus
Analyze
Symbol: Kdelr2
Name: KDEL endoplasmic reticulum protein retention receptor 2
RGD ID: 1304618
Description: Predicted to enable KDEL sequence binding activity. Predicted to be involved in protein retention in ER lumen and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in cis-Golgi network and endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 21. Orthologous to human KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2); INTERACTS WITH 17alpha-ethynylestradiol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ER lumen protein retaining receptor 2; ER lumen protein-retaining receptor 2; KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2; KDEL receptor 2; LOC304290
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,252,424 - 16,270,737 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1216,252,424 - 16,270,719 (-)EnsemblGRCr8
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1217,733,630 - 17,751,909 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1217,659,776 - 17,678,055 (-)NCBILyon_Normotensive
Lyon_Hypertensive1216,510,774 - 16,529,055 (-)NCBILyon_Hypertensive
F344_StmMcwi1227,096,706 - 27,114,849 (-)NCBIF344_StmMcwi
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)Ensemblrn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1212,932,160 - 12,950,458 (-)NCBICelera
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Cytogenetic Map12p11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
amiodarone  (EXP)
amitrole  (EXP)
atrazine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-hexachlorocyclohexane  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium sulfate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nickel atom  (ISO)
nitrates  (ISO)
Nivalenol  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
rotenone  (EXP)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. UBXD4, a UBX-containing protein, regulates the cell surface number and stability of alpha3-containing nicotinic acetylcholine receptors. Rezvani K, etal., J Neurosci. 2009 May 27;29(21):6883-96. doi: 10.1523/JNEUROSCI.4723-08.2009.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:1325562   PMID:15489334   PMID:18086916   PMID:23376485  


Genomics

Comparative Map Data
Kdelr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,252,424 - 16,270,737 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1216,252,424 - 16,270,719 (-)EnsemblGRCr8
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1217,733,630 - 17,751,909 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1217,659,776 - 17,678,055 (-)NCBILyon_Normotensive
Lyon_Hypertensive1216,510,774 - 16,529,055 (-)NCBILyon_Hypertensive
F344_StmMcwi1227,096,706 - 27,114,849 (-)NCBIF344_StmMcwi
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)Ensemblrn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1212,932,160 - 12,950,458 (-)NCBICelera
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Cytogenetic Map12p11NCBI
KDELR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,461,089 - 6,484,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,445,953 - 6,484,193 (-)Ensemblhg38GRCh38
GRCh3776,500,720 - 6,523,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,467,237 - 6,490,374 (-)NCBIBuild 36Build 36hg18NCBI36
Build 3476,275,509 - 6,296,940NCBI
Celera76,211,338 - 6,234,431 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,373,518 - 6,395,670 (-)NCBIHuRef
CHM1_176,500,302 - 6,523,431 (-)NCBICHM1_1
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)NCBI
Kdelr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,389,575 - 143,407,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,389,593 - 143,407,656 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385143,403,820 - 143,421,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,403,838 - 143,421,901 (+)Ensemblmm10GRCm38
MGSCv375144,165,499 - 144,182,955 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365144,165,505 - 144,182,947 (+)NCBIMGSCv36mm8
Celera5140,450,973 - 140,468,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.12NCBI
Kdelr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)Ensembl
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBIChiLan1.0ChiLan1.0
KDELR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,188,025 - 11,211,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,512,862 - 59,535,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,960,456 - 6,983,515 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,654,430 - 6,667,794 (-)NCBIPanPan1.1PanPan1.1panPan2
KDELR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,796,586 - 11,815,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,798,377 - 11,815,760 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha613,421,923 - 13,441,095 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0611,798,777 - 11,817,951 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,799,791 - 11,817,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,674,580 - 11,693,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,654,175 - 11,673,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,880,887 - 11,900,112 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Kdelr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,024,950 - 140,042,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493676515,820 - 33,932 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493676516,017 - 33,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDELR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,716,646 - 4,735,300 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.134,716,651 - 4,735,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KDELR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,671,314 - 15,694,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,672,442 - 15,694,148 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666102377,263 - 401,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdelr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,853,425 - 30,873,754 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474030,853,252 - 30,875,730 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Kdelr2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1169,724,803 - 9,742,963 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Kdelr2
104 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:94
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000001438
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)121186960016966542Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)121223300030490641Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12790162533938215Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743833700556Rat

Markers in Region
BF387279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,156,676 - 11,156,867 (+)MAPPERmRatBN7.2
Rnor_6.01213,210,318 - 13,210,508NCBIRnor6.0
Rnor_5.01215,250,331 - 15,250,521UniSTSRnor5.0
RGSC_v3.41211,513,114 - 11,513,304UniSTSRGSC3.4
Celera1212,950,018 - 12,950,208UniSTS
RH 3.4 Map12158.61UniSTS
Cytogenetic Map12p11UniSTS
BI276615  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1212,932,328 - 12,932,493UniSTS
RH 3.4 Map12156.0UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000001438   ⟹   ENSRNOP00000001438
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1216,252,424 - 16,270,354 (-)Ensembl
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)Ensembl
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167024   ⟹   ENSRNOP00000099503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1216,253,203 - 16,270,719 (-)Ensembl
RefSeq Acc Id: NM_001013122   ⟹   NP_001013140
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,252,424 - 16,270,719 (-)NCBI
mRatBN7.21211,138,820 - 11,157,117 (-)NCBI
Dahl_SR_JrHsd1217,733,630 - 17,751,909 (-)NCBI
Lyon_Normotensive1217,659,776 - 17,678,055 (-)NCBI
Lyon_Hypertensive1216,510,774 - 16,529,055 (-)NCBI
F344_StmMcwi1227,096,706 - 27,114,849 (-)NCBI
Rnor_6.01213,192,452 - 13,210,758 (-)NCBI
Rnor_5.01215,232,465 - 15,250,771 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)RGD
Sequence:
RefSeq Acc Id: XM_063271257   ⟹   XP_063127327
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81216,252,424 - 16,270,737 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001013140 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127327 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85786 (Get FASTA)   NCBI Sequence Viewer  
  EDL89668 (Get FASTA)   NCBI Sequence Viewer  
  Q5U305 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001013140   ⟸   NM_001013122
- UniProtKB: Q5U305 (UniProtKB/Swiss-Prot),   A6K1L0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000001438   ⟸   ENSRNOT00000001438
RefSeq Acc Id: XP_063127327   ⟸   XM_063271257
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000099503   ⟸   ENSRNOT00000167024

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U305-F1-model_v2 AlphaFold Q5U305 1-212 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698439
Promoter ID:EPDNEW_R8964
Type:initiation region
Name:Kdelr2_1
Description:KDEL endoplasmic reticulum protein retention receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01213,210,794 - 13,210,854EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304618 AgrOrtholog
BioCyc Gene G2FUF-20006 BioCyc
Ensembl Genes ENSRNOG00000001083 Ensembl
IMAGE_CLONE IMAGE:7108608 IMAGE-MGC_LOAD
InterPro ER_ret_rcpt UniProtKB/Swiss-Prot
KEGG Report rno:304290 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93761 IMAGE-MGC_LOAD
NCBI Gene 304290 ENTREZGENE
PANTHER PTHR10585 UniProtKB/Swiss-Prot
Pfam ER_lumen_recept UniProtKB/Swiss-Prot
PhenoGen Kdelr2 PhenoGen
PRINTS ERLUMENR UniProtKB/Swiss-Prot
PROSITE ER_LUMEN_RECEPTOR_1 UniProtKB/Swiss-Prot
  ER_LUMEN_RECEPTOR_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000001083 RatGTEx
UniProt A0A8L2Q098_RAT UniProtKB/TrEMBL
  A0ABK0L914_RAT UniProtKB/TrEMBL
  A6K1L0 ENTREZGENE, UniProtKB/TrEMBL
  ERD22_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Kdelr2  KDEL endoplasmic reticulum protein retention receptor 2  Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  LOC100360920  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Data merged from RGD:2321139 1643240 APPROVED
2010-05-05 LOC100360920  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Kdelr2_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Kdelr2_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED