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Gene: Alpk1 (alpha-kinase 1) Rattus norvegicus

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Symbol:

Alpk1

Name:

alpha-kinase 1

RGD ID:

1304613

Description:

Predicted to enable monosaccharide binding activity and protein serine/threonine kinase activity. Predicted to be involved in several processes, including cilium assembly; cytoplasmic pattern recognition receptor signaling pathway; and positive regulation of canonical NF-kappaB signal transduction. Predicted to act upstream of or within response to bacterium. Predicted to be located in cytosol; microtubule cytoskeleton; and photoreceptor connecting cilium. Predicted to be active in cilium. Orthologous to human ALPK1 (alpha kinase 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

alpha-protein kinase 1; LOC310879; RGD1304613; similar to lymphocyte alpha-kinase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ALPK1 (alpha kinase 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Alpk1 (alpha-kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Alpk1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ALPK1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ALPK1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Alpk1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ALPK1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ALPK1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Alpk1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Alpk1 (alpha kinase 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SHCBP1 (SHC binding and spindle associated 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ALPK1 (alpha kinase 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Alpk1 (alpha-kinase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	alpk1 (alpha-kinase 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	alpk1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	218,801,425 - 218,924,013 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	218,780,189 - 218,921,646 (-)	Ensembl				GRCr8
mRatBN7.2	2	216,126,939 - 216,247,180 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	216,128,825 - 216,247,157 (-)	Ensembl				mRatBN7.2
Rnor_6.0	2	231,997,360 - 232,117,471 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	231,996,088 - 232,117,134 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	251,345,268 - 251,462,165 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	224,934,194 - 224,989,819 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	208,443,568 - 208,559,107 (-)	NCBI		Celera
RGSC_v3.1	2	224,888,846 - 224,988,527 (-)	NCBI
Cytogenetic Map	2	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

diabetes mellitus (ISO)

Diabetic Nephropathies (ISO)

genetic disease (ISO)

gout (ISO)

nephrosclerosis (ISO)

Retinal Dystrophy, Optic Nerve Edema, Splenomegaly, Anhidrosis, and Migraine Headache Syndrome (ISO)

retinitis pigmentosa 1 (ISO)

Weight Loss (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxynon-2-enal (ISO)

6-propyl-2-thiouracil (EXP)

7,9-dihydro-1H-purine-2,6,8(3H)-trione (ISO)

acrolein (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP,ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dimethylarsinic acid (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glufosinate (ISO)

hydroquinone (ISO)

indole-3-methanol (EXP)

indometacin (ISO)

lidocaine (EXP)

methimazole (EXP)

methylarsonic acid (ISO)

methylparaben (ISO)

mono(2-ethylhexyl) phthalate (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

potassium dichromate (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (EXP)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

streptozocin (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

triclosan (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cilium assembly (ISO)

cytoplasmic pattern recognition receptor signaling pathway (IBA,ISO)

innate immune response (IBA,ISO)

positive regulation of canonical NF-kappaB signal transduction (ISO)

response to bacterium (ISO)

Cellular Component

centrosome (ISO)

ciliary basal body (ISO)

cilium (IBA,ISO)

cytosol (ISO)

photoreceptor connecting cilium (ISO)

spindle pole (ISO)

Molecular Function

ATP binding (IEA)

kinase activity (IEA)

monosaccharide binding (IBA,ISO)

protein binding (ISO)

protein serine/threonine kinase activity (IBA,IEA,ISO)

transferase activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:23012479	PMID:28222186	PMID:28877472	PMID:30111836

Genomics

Comparative Map Data

Alpk1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	218,801,425 - 218,924,013 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	218,780,189 - 218,921,646 (-)	Ensembl				GRCr8
mRatBN7.2	2	216,126,939 - 216,247,180 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	216,128,825 - 216,247,157 (-)	Ensembl				mRatBN7.2
Rnor_6.0	2	231,997,360 - 232,117,471 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	231,996,088 - 232,117,134 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	251,345,268 - 251,462,165 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	224,934,194 - 224,989,819 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	208,443,568 - 208,559,107 (-)	NCBI		Celera
RGSC_v3.1	2	224,888,846 - 224,988,527 (-)	NCBI
Cytogenetic Map	2	q42	NCBI

ALPK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	112,297,369 - 112,442,621 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	112,285,509 - 112,442,621 (+)	Ensembl			hg38	GRCh38
GRCh37	4	113,218,525 - 113,363,777 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	113,437,948 - 113,583,223 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	113,656,455 - 113,720,433	NCBI
Celera	4	110,512,576 - 110,657,856 (+)	NCBI		Celera
Cytogenetic Map	4	q25	NCBI
HuRef	4	108,950,042 - 109,095,428 (+)	NCBI		HuRef
CHM1_1	4	113,195,311 - 113,340,525 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	115,605,712 - 115,750,965 (+)	NCBI		T2T-CHM13v2.0

Alpk1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	127,460,367 - 127,574,195 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	127,463,959 - 127,574,176 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	127,666,718 - 127,780,547 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	127,670,310 - 127,780,527 (-)	Ensembl			mm10	GRCm38
MGSCv37	3	127,373,228 - 127,483,445 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	127,662,332 - 127,772,549 (-)	NCBI		MGSCv36	mm8
Celera	3	134,160,957 - 134,282,674 (-)	NCBI		Celera
Cytogenetic Map	3	G2	NCBI
cM Map	3	56.54	NCBI

Alpk1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955457	14,325,281 - 14,379,937 (-)	Ensembl
ChiLan1.0	NW_004955457	14,325,278 - 14,444,368 (-)	NCBI	ChiLan1.0	ChiLan1.0

ALPK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	110,372,767 - 110,517,166 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	110,666,192 - 110,813,772 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	104,786,721 - 104,931,981 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	115,349,826 - 115,495,026 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	115,430,258 - 115,495,026 (+)	Ensembl			panPan2	panpan1.1

ALPK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	32,135,110 - 32,270,732 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	32,136,738 - 32,267,264 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	9,763,410 - 9,897,996 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	32,358,805 - 32,493,869 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	32,364,919 - 32,493,694 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	32,341,883 - 32,476,840 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	32,102,803 - 32,237,847 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	7,622,218 - 7,758,515 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Alpk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	8,612,620 - 8,737,685 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936563	3,235,181 - 3,296,257 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936563	3,233,913 - 3,296,671 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ALPK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	110,241,227 - 110,367,912 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	110,241,220 - 110,368,001 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	118,153,267 - 118,184,844 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ALPK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	60,096,755 - 60,233,569 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	60,202,204 - 60,236,743 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666037	38,857,444 - 38,994,232 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Alpk1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624838	6,229,899 - 6,287,920 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624838	6,273,398 - 6,288,363 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Alpk1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	31,564,624 - 31,674,373 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Alpk1
1199 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	40
Count of miRNA genes:	38
Interacting mature miRNAs:	40
Transcripts:	ENSRNOT00000030798
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	163997722	225110681	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	170656145	239614549	Rat
631563	Hcuc3	Hepatic copper content QTL 3	3.87		liver copper amount (VT:0003065)	liver copper weight to liver dry weight ratio (CMO:0001512)	2	212145502	231732847	Rat
631566	Bp90	Blood pressure QTL 90		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	149957381	221199885	Rat
1298075	Scl17	Serum cholesterol level QTL 17	3.4		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	214404877	251712708	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
1300126	Bp175	Blood pressure QTL 175	3.46		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	204795005	249795005	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
1581578	Cm49	Cardiac mass QTL 49	4.9	0.01	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	145807215	220931416	Rat
1302789	Stl26	Serum triglyceride level QTL 26	3.1	0.0035	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	206613059	226891081	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317752	Glom23	Glomerulus QTL 23	3.6		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	2	196140964	251540988	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1549836	Bss2	Bone structure and strength QTL 2	7.5		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	2	214404877	251712708	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	205135267	250135267	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	159440891	220931218	Rat
1359031	Bp275	Blood pressure QTL 275			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	188565047	233565047	Rat
1581499	Esta2	Estrogen-induced thymic atrophy QTL 2			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	192287802	229609668	Rat
9589044	Scfw1	Subcutaneous fat weight QTL 1	5.8	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	2	184856304	229856304	Rat
8694435	Bw166	Body weight QTL 166	14.08	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	2	184856304	229856304	Rat
631203	Gluco14	Glucose level QTL 14		0.0001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	2	209350500	221678003	Rat
7207490	Bss111	Bone structure and strength QTL 111	6.4		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	2	214404877	251712708	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1331745	Bp203	Blood pressure QTL 203	4.377		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	192287802	221089121	Rat
8694194	Abfw1	Abdominal fat weight QTL 1	11.7	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	2	184856304	229856304	Rat
61366	Iddm3	Insulin dependent diabetes mellitus QTL 3	4.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	192287802	237287802	Rat
1578671	Bmd10	Bone mineral density QTL 10	5.4		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	2	175931416	220931416	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	251712708	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
2300189	Bmd48	Bone mineral density QTL 48	5.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	2	182024327	227024327	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	159440760	228950743	Rat
2301408	Kidm36	Kidney mass QTL 36		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	184482291	229482291	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	205135267	250135267	Rat
1598813	Memor9	Memory QTL 9	2.7		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	202029709	236904960	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	210956252	251712708	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	143344967	251712708	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	143344967	251712708	Rat
2298479	Eau5	Experimental allergic uveoretinitis QTL 5		0.0021	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	2	205135267	225627153	Rat
7207484	Bss108	Bone structure and strength QTL 108	5.3		femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	2	214404877	251712708	Rat
2313073	Bmd75	Bone mineral density QTL 75	4.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	2	218051934	251712708	Rat
738013	Alc15	Alcohol consumption QTL 15	4.1	0.00022	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	2	186850607	231850607	Rat
61398	Bp50	Blood pressure QTL 50	4.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	192287802	237287802	Rat
7207482	Bss107	Bone structure and strength QTL 107	7		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	2	214404877	251712708	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	151869660	223841096	Rat
61417	Cia10	Collagen induced arthritis QTL 10	3.4		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	2	182635347	227635347	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
631522	Bp74	Blood pressure QTL 74		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	175008837	220008837	Rat
8694383	Bw158	Body weight QTL 158	7.69	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	2	184856304	229856304	Rat
1598835	Anxrr18	Anxiety related response QTL 18	2.98		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	2	203664411	248664411	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166372086	229820014	Rat

Markers in Region

D2Rat291

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	218,830,334 - 218,830,507 (+)	Marker Load Pipeline
mRatBN7.2	2	216,155,848 - 216,156,021 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	232,024,895 - 232,025,067	NCBI	Rnor6.0
Rnor_5.0	2	251,370,383 - 251,370,555	UniSTS	Rnor5.0
RGSC_v3.4	2	224,959,151 - 224,959,325	RGD	RGSC3.4
RGSC_v3.4	2	224,959,152 - 224,959,324	UniSTS	RGSC3.4
Celera	2	208,470,906 - 208,471,078	UniSTS
RGSC_v3.1	2	224,945,831 - 224,946,005	RGD
SHRSP x BN Map	2	86.3798	UniSTS
SHRSP x BN Map	2	86.3798	RGD
Cytogenetic Map	2	q42	UniSTS

RH138670

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	83,113,432 - 83,113,679 (+)	MAPPER	mRatBN7.2
mRatBN7.2	2	216,164,169 - 216,164,413 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	232,033,215 - 232,033,458	NCBI	Rnor6.0
Rnor_6.0	17	87,490,477 - 87,490,723	NCBI	Rnor6.0
Rnor_5.0	17	89,181,425 - 89,181,671	UniSTS	Rnor5.0
Rnor_5.0	2	251,378,703 - 251,378,946	UniSTS	Rnor5.0
RGSC_v3.4	2	224,967,472 - 224,967,715	UniSTS	RGSC3.4
RGSC_v3.4	17	94,592,933 - 94,593,179	UniSTS	RGSC3.4
Celera	17	82,379,911 - 82,380,157	UniSTS
Celera	2	208,479,226 - 208,479,469	UniSTS
Cytogenetic Map	2	q42	UniSTS
Cytogenetic Map	17	q12.3	UniSTS
Cytogenetic Map	9	q31	UniSTS

RH139278

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	216,129,254 - 216,129,480 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	231,998,397 - 231,998,622	NCBI	Rnor6.0
Rnor_5.0	2	251,343,921 - 251,344,146	UniSTS	Rnor5.0
RGSC_v3.4	2	224,932,276 - 224,932,501	UniSTS	RGSC3.4
Celera	2	208,444,605 - 208,444,830	UniSTS
RH 3.4 Map	2	1547.1	UniSTS
Cytogenetic Map	2	q42	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	84	59	6	346	184	11	144	79	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001433149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001076258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591342	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591343	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104061	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039104062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_227715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473952	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030798 ⟹ ENSRNOP00000030809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	218,780,189 - 218,921,646 (-)	Ensembl
mRatBN7.2 Ensembl	2	216,128,825 - 216,247,157 (-)	Ensembl
Rnor_6.0 Ensembl	2	231,996,088 - 232,117,134 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000124085 ⟹ ENSRNOP00000104468

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	218,804,681 - 218,921,645 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137029 ⟹ ENSRNOP00000107926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	218,804,681 - 218,921,267 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144166 ⟹ ENSRNOP00000108175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	218,804,681 - 218,913,407 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155515 ⟹ ENSRNOP00000107422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	218,803,624 - 218,921,494 (-)	Ensembl

RefSeq Acc Id:

XM_017591342 ⟹ XP_017446831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	218,801,425 - 218,924,012 (-)	NCBI
mRatBN7.2	2	216,126,939 - 216,247,179 (-)	NCBI
Rnor_6.0	2	231,997,360 - 232,117,471 (-)	NCBI

Sequence:

show sequence

TAAACTTCTTCAGCACAGCAGACTCAGAAAGGCTCAAAGTTAAAATATTGTTGACCTCTTAAAA
CTTTCCGATAGAAATGTACTTTGATAAACATTTTAACATCTTTCTGTGTACTTTTGACTTGCTT
TTGTCAAAACCGGACTCTAAAATTCTATTTACAAACCAGCTATCAGACAAGTTCCTTTTCTTGT
GAAACTGCAAGGAAAGTCTTTATTTGGACTAGGGCAGAATGGAGTCATCCAAGAGTGAAAGAAG
AGACCGCCAATGAGAAATCAGGAACATGACGACACTGTTTTGATGTTATCAAAAGACAAGCTCT
CCGTGTCTCCTTTCGGTGCTCTACCTCGGAGTTAGAGCGCAGTGGGGAACGAGGTGTCGCAGAG
GCACGTGGGTCAACATGTTTATTTGCACTGGAGACCAAGCTGGGGTTTTCCTGGTGGACGGTGC
CAGACGAAGTAACACAACTCCCAGAATACCTTTCCCGCAGCAGTCCCTAACGGGGCGTGTCTCG
TGGTGGCGTTACACAAGCTCGTTCTGATGAAGGAAGGGCTTTTCTTTTCAGAGTCCCGTTTCCT
GGAACAGAAGCTGTTGAGGAGAAACGCTGTGTTTCCGGGAGGTTGCACCGGAATTAAGGATCTC
CCAGTCAGGCCGCTGCTCTCTGGTGTCTCTCTCTCCCCTGCTCTGGCATAAAAGTACCTCAGCC
TTCAAGGGCCTTCTCTATTGAGAATCAATGCCTCTCCTAGGTAATTGATCACCATAGACCCGGG
GAGACTCGATTCATCCTGGACGGTGGTTAATCGTCATGAATAATCAAGACGCTGTGGCTTCCAT
ACTGCACGAGTGCAAGCAAGTGCTGGACCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAG
GACAAGGGTGAGGACCAGCGGTGCAGAGCCTCACTCTCCGGCGAGTTAAGGACCCTGATCCAGG
AGGCGAAGGAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAGTACAAACAAGCCATGAGCCC
AGAGGACAAAACAAACCTGCAGGACGTGATTGGCGCCGGGCTGCAGCAGTTACTGAAAATAAAT
GTTGCCACTAAGATGAGACCCACTATGACTGGTGAAGAAAGAGCAGGGACCACATCTGGAAAGT
GGCCTGCCCCTAAAACATGGGTTTTGGGGGACTACTTCAACTGCCTGAAGCAAATGGACTTCAA
AGAGAAGGGGCAGAACATGTGCTGGAGTGCTATGTCAGAGAACATCATCTCTAAGGCGGCCTTG
CGAGCCTCCATCCTTGTCCAGGACTGCGCTGCCGCCGCCGCTATTGTCTTCTTGATGGACCGGT
TCCTGTACGGACTCGACGTCTCGGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGCA
GCCCGCGACGCCCATCGCCCCGCAGGTGGTCATCCGCCAAGCCCGGGTCTCTGTCAACTCAGGG
AAACTGTTGAAGGCAGAGTACATCCTGAGCAGCCTGATATGCAACAGCGGTGCAACTGGTACCT
GGCTCTATAGGAATGAGAGTGACAAGGTCCTGGTACAGTCGGTGTGCATACAGATCAGAGGGCA
AATTCTGCAGAAGCTAGGCATGTGGTATGAAGCGGCAGAGTTGATATGGGCCTCCGTCATAGGA
TATTTGTCACTCCCTCAGCCAGATAAGAAGGGCATTTCCACGTCATTGGGCATACTGGCGGACA
TCTTTGTGTCTATGAGCAAAACTGATTATGAGAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGC
CTTGCTCAAGGAGTTCGACCATCGTTTATTGTCAGCTGCGGAAGCCTGCAAACTGGCAGCTGCC
TTCAGTGCCTACACGCCCCTGTTCGTGCTCACAGCTGTGAACATCCGTGGAACATGTCTATTGT
CATACAGTTGTTCTGCTGACTGCCCTCCAGGAATGAAAAGTGCGTATCTGCGTGAAGCCAAAGA
AGCCTTTGAGATTGGCCTCCTCACCAAGAAAGACGGCGAGCTGGTTAGTGGAAAGCAGGAGCTA
CACAGCTTCATCAAAGCTGCCTTTGGCCTCGCCACGGTGCACTGCAGGCTCCATGGGGAGACAG
ATGCAGTCCGTGCAGCAAAGCAGCAGTGCAGCGCAGCTATGGGCAAGCTCTACACCTTCAGCAC
TTCCCTCTCGAGCCAGGACAGAGAAGTCCTGTCTCGGGAAATCATGTCCCTCATCAGCCAGGTG
AAGGGACATCTACACGTTCAAAGCTTCCCAAATGCAGATGATAGATCTTATGTCCCAGAGAGTT
TCACGTGTGGTTTAGATAGGCCCATCTTGCATGGGCACGTGGATTTCCAACAGCTTCTCGAAAC
CTACTCCCAGCACCATACTTCAGTGTGCGAGGTATTTGAAAGCACGTGTAGGAACAGCAGAGGC
CACCAGAGAGACGCAAAGGCAGAGGTCTGTATCACCACTCTGAAGACGGAAACAAGCACTATAG
ATACTGTGGGGGTTACTCTAGAGAAAGTGTGCTCCCAAGACAGCGGGAGTACAGCTTATTCCAA
GATGTCTGAGAAAGATTGGGAGAAGCTCCAAAGAGTAAGGAGGAGAAACTGGACCCATTCCGAG
GCGTTTCGAGTCTCCCTGGATCAAGATACGGGGACGGAGACTGAGCTACCAAACCACAGCAATG
GCAGGGCAGATGTCTCCAGCAAGCCTCTGAGAGACAGCTCTAGCTCGAGTTCTTGGAGCAGACT
GTCAGGGCTCAGCTCTTCCGCAAGCTGGGAGGAAGTGAACGGTGCTGTTCAGGATACAGAAAGG
AAAGAGTCTAGCCAAGAGGAACATCTTGTGGACACTCAATGCTCCACAGCAGTGTCTGAGGAAC
CCGAGGGGGACAGACGTATATGTAGAGAGACGTATTTGCTGTTTTCCAAGCTCCACGGTGTCTC
TCTTCAGACGACCGAAGATCACAATGCAGAGTCTTCACAAAGTCAGTTACACACACCCGCCCTT
CCTCTCAACTCGACGACCACTTGTTTGGCCTCAGATGCAGGGCTCTTAGAACCCCCTGAAGGAT
CCAACACTACTTCTCTTCAGTCCAGTCCTTCATGTGGTTCTGATGCCTGGTCCTTGGCTAGTTT
GGGCAGGTTCACAGCTGTGACCACATATCCTTCAGTTCAGGAAGAAGAAACTTCTGGAATAATT
GGTGATTTCCCAGAATCCAAGTATGACTTCAAAGACTGGAGTGGAGAAAAGAATGAGGGAAAAC
TCACTGAAATATGCACGGGGCCTGAATTAACGTTTGCCTCCTCCTCGGTAGACCCAGAAGGAGA
CACGGCAGAAAGCACAGATGATGGCCCATCACACTCTCTGGTAGTCCCAGGAGGTTTACAAGGC
AGCCATTCAATGTCTACGCATCGGACTTCCTTTTCAGATTGGTCTGTTCAAAATGCTGACTCAG
CAAAGATTGGCTGCTCCGTCAAAGACGAAGCTGTGGACCCTGATGCTTCTACGGTGGATGAGGA
GGGCCAAATGCTTGACAGCACAGAGGTCTACTCCATTGGCCAAGATGGCGCTCACAGACCACGT
GCTTTAAGGTCCGGTCAGAGTGATGAGAGTCCAAAGTCCTTTGTAAATGGCCACGGTCCCTCCC
CTATCTTCGATGAGGACTTCAGCACCACAGAGGAAGGAGAGGAACTTGGGAGCATGCTGAAGAG
TAGCCAGAACTCCAGCTCATGCTCGCCGTGGTGGCTAAAATCACCCGCCTTTTCCCGCAGTTCG
TCTGAGGGGGAAAGCTCCTGGTCTCTGCTGAACTCTAGCCGAAGTTCCTTTGGCTCACTGACAG
GACAGACCAGCCAAGAGATCCTTGAGGCTCGCACCCTGCAGCCTGATGACCTTGAAAAGCTTCT
AGCAGGGGTGAGGCATGATTGGCTGCTTCAGAGACTGGAGAATACAGGAGTTTTGAAGTCCAAT
CAACTCCAACAAGCACACAGTGCCCTCCTGCTAAAATATTCCAAAAAGTCTGAGTTGTGGACGG
CCCAGGAAACGGTGGTATATCTGGGAGACTACCTGAAAGTGAAGAAGAAGGGCAAGCAGAGAAA
TGCATTCTGGGTCCACTATCTCCATCAAGAGGAAACCCTGGGGAGATACGTTGGGAAAGAATAT
AAAGAGCGGAAGGGGCTCCGGTACCACCTCACAGATGTGGAGCGGCAGATGACAGCGCAGCACT
ACGTGACAGAGTTTAACAAGAGACTCTACGAGCAAAAGATCCCAACGCAGATATTCTACATCCC
GTCCACAATATTGCTGATTTTGGAAGGCAGGACTATAAAGGGGTGCATCAGTGTGGAGCCTTAC
ATCCTGGGAGAATTCGTCAAGTTATCAAATAACACCAAAGTCGTCAAGACCGAGTACAAAGCTA
CAGAATACGGCTTGGCCTACGGCCATTTTTCTTACGAGTTTTCTAACCACAGACATGTTGTGGT
TGATTTACAAGGTTGGGTGACTGGTAATGGAAAAGGCCTCATCTATCTCACAGATCCTCAGATT
CACTCTGTAGATCAGAGAGACGTCACTACAAACTTTGGAAAGCGGGGCATATTTTACTTCTTTA
ATAACCAACATGCAAGCTGTAATGAAATATGCCATCGTCTTTCTCTGACGAGACCTTCACTAGA
GCAAACAAGTAAGATATAGGCAGTGGGTTGGGAGCCTAGCATCAAATCTGCCTCCTTCCAGGAA
TACAAAGCGAGGCAAGTGTTGACGTATTGATCAGTTGGGCCAATGGATGATTCCAGCTATTGAC
TTATGAGAGGAATACACAAGTGTTGATTTCAGGCCTACACTTGCTTGCCAGGACAAGATCCTGT
AGACCTGTTCCCTCTGACACAGGGGCATGTCTGGAGGCTGTCCTAGGCCTCACAGTTGTATATG
ATGTTCAGGGTCCTGAGTTGCATGAGGACAACATGGAAAAGGTCTCCAACCAACCCACAATGGA
TGCAAACTTGAGCTGGAAACAAACTGCTGTCATTAAGCCATTGTGATTTCTGTTTGTTTTGTTG
TTGCTTTGTGGGTTGGTTCTGGTTGGGTTGGGTTTTTGGTCTGTTTGGAGAGTTTTGTTTTTTT
TTTTTAATCTGTTAAAACTGATACTGTTGCTGCTTTCTTATTAACCAAAGAGTTCTTTGTAAAT
TTAAAACATCCAGGCTCCTGAAAAGATTTCAATTGTCGTTTCCCTTTTAATATTTGCCATTTTG
TAAAACTGTTGTCCATACAGACTGTTCTTTTGACTGAGATGACTTCTTCACCTTTATTTCATGC
TTGTGTGTGATACCAGATATTTCTGTGTTCTGGGTTTCTTTCTGGTTCTCCCATGTTTTCTTCT
AGTATTTCTATCTATGAAAGGTGCGATGGAAGAGTGGTCACATACCACAGGGTCACCACAGCCT
ATTGCTTTCCCCATACATCTTCTTCACACAAGATTGGTAATTCCTTCTGCTGAAAGAATTGTAT
TAATGCTCAGTGGTACCACCACATTTAAGGTGTGTCGCCTCACCTGGGTTAACACAATGTAGGA
ATTCCCTCATATACAGGCTTGGAGCTTTGTCTCCTAGATATTTCTATGTCTTGTCAAACTGACT
ATCAATACCCACCATCACGTACTGTGCTAAGGAAGTCCAGGATAAGGGGTGGTCATCAAGGGTT
GCAATGGAGTTTGTGTAGAAGGATGGACAGAGAATTGTATATCCTAGAATGAAGACGAAGCAGA
GGAAGCAAGAGTGACAGACTGGAGGGATGTGACAGCCAAAAATGCCGAGGAAGGGAGAGTGAAC
AAGTGGAAAAAGGAAAATGGACAGCCACTAAGAAAAGAGAAGCATTGGATGACATCACAGGGCA
GGGAGGGTGAGAAGGTCGCACACCAAAACTACAACCCTTATTGGAACAGAAAAACAGCTGCCAG
CAGAATGGGCAGGGCCCCAGGGCTGGAAGTGCTCCCAAGGGCTCTGAGTATATCACTTTCTAGG
ATCCCGGGGCCCCACTCCTTCCTCACTGGGCCTGGGCCAGGTTATCTTCCCTTGCATGAGAAGA
CTTTGCATCAGCTGCAACGCCTTGGGTCCTGAGGGGTGTACATGTGGAGAGCAGCTCTGGGAGC
ACCAAGCAGCCCCTTTCAATTTACAATTGAATTCCTCTAAGCCCTTTCTCAAGAGCAACCTCCC
ATCCCATCCATTTTATTGCTGGATAATATTCCAAACTTCTAAAATCAATGTCTTCACTAAAAGT
GTGACTATAACTCCGGCCTGAAATAGCATTCTGAGGACATTTAGGACCTTTGAATACAGACTGA
GCTTTAGATGAAGTCACCAAGTCATGAAGTCCAAGCCAAGGAGAGCGAAACAGTGAGGGAGGGC
ACAGAGCATCATCTTTCCCTTGCATCTGCGCGGAGCCGGATGAGGGCACATGGGTTAGATTATA
ACACTCCGTGTACTTCCTCACAGATTCCTAATTTCCATACTTTTTCATAAATGTGAGGTAATTG
AAAGGAGTGCCAAATCAAATGAAGAGCGAACAGAGAGAGATGAGGGTGATCAAGATTTTTGGCA
AACTAATCAAAAAGAAGTACAAGAAAGAGTAGCCAACGGCGTAAAATCCTACAGAAAAAAAAAT
CAAGAAAAAATACAATATGTACTTACTTAATGAGGGAGTGGGGACAGTACGAAGTGATTGTGAC
AACAAGAAAGGCCATTAACTGACAGAGAGGTGTTAAATATCATAGAACTGAGGTCAGTAATCCT
GAGTCCATGCCCATGAGTCAAACCTACTGTGAAAGTCATTGGTCGTTAGAACAGTTTTTTTCAA
TGCTATTCTCTCTGAAGAGGTGGAGAAGAACTGCTGACCTGTGAACTCAGATTCACCCTCAAAC
CCCCCAAATCAGGGGAAAGTGTAGGCCAAGGAAATCTACTTACCCTGCCTGTGGGATCTGGGCC
TGGTTAAAAGTGTACTTGACTTAGCAAACCTCCATATGAACAGCTCCTTCTAGAATAAAATGTG
CTACTTTCTCCTCTGGTTTCCAAATCCCTTGTCTGTAGGCCAGCAGAGCCATCAGATGATGGTG
GTACCCAGAAATCCCTCAATCAGCATCCTGGGGACTCATTCTGGGAAGCAGGTGGATCCTCTGT
TCAGGGTGCATAGCCAGGGACCATGCTGATGTGGGCCAGTCCTATCCCAATCCACTGCAGCTCC
ACTTCCTGTTCCCCTCTTGCTGGGACCAGCATGGGTGTTTGTTGTACTCAAGCTATGCCCTTCT
CTGAGTCACTCCATATTTTGTAAAACCATGATTTTTCATTTTTCAGGCTTGCTCAGATAGATTC
TGTCTTAGAAACAACCTTTGGCTCCAGGTCAAGGTAGGGGGATGACCACGTCCCTGGGCAGATA
AGTAAACACCATCTGTCTGGCACCACCCACACAGCACAGGCTAATAAATGGCATTCCTTGGAGT
AGACAGGGTGAATTTACTGGGATGAATTGAGGCTGTACGGGCACACAGGTGTAATTAAAATCAT
ACCAGGAAAACAAAATGTTCTAGGCACTTCTCTGTTGCTGTGTTAAAACACCACAGCCGAGGCA
ACTTAGAGAAGTTTATTTGGGCTTATGGTTGTGGAAGGATAAGAGTCTATGAT

hide sequence

RefSeq Acc Id:

XM_039104061 ⟹ XP_038959989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	218,801,425 - 218,924,013 (-)	NCBI
mRatBN7.2	2	216,126,939 - 216,247,179 (-)	NCBI

RefSeq Acc Id:

XM_039104062 ⟹ XP_038959990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	218,801,425 - 218,924,013 (-)	NCBI
mRatBN7.2	2	216,126,939 - 216,247,180 (-)	NCBI

RefSeq Acc Id:

XM_063282918 ⟹ XP_063138988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	218,801,425 - 218,924,009 (-)	NCBI

RefSeq Acc Id:

XM_227715 ⟹ XP_227715

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	218,801,425 - 218,924,008 (-)	NCBI
mRatBN7.2	2	216,126,939 - 216,247,178 (-)	NCBI
Rnor_6.0	2	231,997,360 - 232,117,470 (-)	NCBI
Rnor_5.0	2	251,345,268 - 251,462,165 (-)	NCBI
RGSC_v3.4	2	224,934,194 - 224,989,819 (-)	RGD

Sequence:

show sequence

AAACTTCTTCAGCACAGCAGACTCAGAAAGGCTCAAAGTTAAAATATTGTTGACCTCTTAAAAC
TTTCCGATAGAAATGTACTTTGATAAACATTTTAACATCTTTCTGTGTACTTTTGACTTGCTTT
TGTCAAAACCGGACTCTAAAATTCTATTTACAAACCAGCTATCAGACAAGTTCCTTTTCTTGTG
AAACTGCAAGGAAAGTCTTTATTTGGACTAGGGCAGAATGGAGTCATCCAAGAGTGAAAGAAGA
GACCGCCAATGAGAAATCAGGAACATGACGACACTGTTTTGATGTTATCAAAAGACAAGCTCTC
CGTGTCTCCTTTCGGTGCTCTACCTCGGAGTTAGAGCGCAGTGGGGAACGAGGTGTCGCAGAGG
CACGTGGGTCAACATGTTTATTTGCACTGGAGACCAAGCTGGGGTTTTCCTGGTGGACGGTGCC
AGACGAAGTAACACAACTCCCAGAATACCTTTCCCGCAGCAGTCCCTAACGGGGCGTGTCTCGT
GGTGGCGTTACACAAGCTCGTTCTGATGAAGGAAGGGCTTTTCTTTTCAGAGTCCCGTTTCCTG
GAACAGAAGCTGTTGAGGAGAAACGCTGTGTTTCCGGGAGGTTGCACCGGAATTAAGGATCTCC
CAGTCAGGCCGCTGCTCTCTGGTGTCTCTCTCTCCCCTGCTCTGGCATAAAAGTACCTCAGCCT
TCAAGGGCCTTCTCTATTGAGAATCAATGCCTCTCCTAGGTAATTGATCACCATAGACCCGGGG
AGACTCGATTCATCCTGGACGGTGGTTAATCGTCATGAATAATCAAGACGCTGTGGCTTCCATA
CTGCACGAGTGCAAGCAAGTGCTGGACCGTCTCTTGTTGGAAACGCCAGATGTGTCTACAGAGG
ACAAGGGTGAGGACCAGCGGTGCAGAGCCTCACTCTCCGGCGAGTTAAGGACCCTGATCCAGGA
GGCGAAGGAAATGAAGTGGCCCTTCGTGCCTGAAAAGTGGCAGTACAAACAAGCCATGAGCCCA
GAGGACAAAACAAACCTGCAGGACGTGATTGGCGCCGGGCTGCAGCAGTTACTGGCGGCCTTGC
GAGCCTCCATCCTTGTCCAGGACTGCGCTGCCGCCGCCGCTATTGTCTTCTTGATGGACCGGTT
CCTGTACGGACTCGACGTCTCGGGAAAACTCCTGCAGGTCGCCAAAGGCTTGCACAAGCTGCAG
CCCGCGACGCCCATCGCCCCGCAGGTGGTCATCCGCCAAGCCCGGGTCTCTGTCAACTCAGGGA
AACTGTTGAAGGCAGAGTACATCCTGAGCAGCCTGATATGCAACAGCGGTGCAACTGGTACCTG
GCTCTATAGGAATGAGAGTGACAAGGTCCTGGTACAGTCGGTGTGCATACAGATCAGAGGGCAA
ATTCTGCAGAAGCTAGGCATGTGGTATGAAGCGGCAGAGTTGATATGGGCCTCCGTCATAGGAT
ATTTGTCACTCCCTCAGCCAGATAAGAAGGGCATTTCCACGTCATTGGGCATACTGGCGGACAT
CTTTGTGTCTATGAGCAAAACTGATTATGAGAAGTTTAAGAAGAGCCCAAAGGTTAACTTGGCC
TTGCTCAAGGAGTTCGACCATCGTTTATTGTCAGCTGCGGAAGCCTGCAAACTGGCAGCTGCCT
TCAGTGCCTACACGCCCCTGTTCGTGCTCACAGCTGTGAACATCCGTGGAACATGTCTATTGTC
ATACAGTTGTTCTGCTGACTGCCCTCCAGGAATGAAAAGTGCGTATCTGCGTGAAGCCAAAGAA
GCCTTTGAGATTGGCCTCCTCACCAAGAAAGACGGCGAGCTGGTTAGTGGAAAGCAGGAGCTAC
ACAGCTTCATCAAAGCTGCCTTTGGCCTCGCCACGGTGCACTGCAGGCTCCATGGGGAGACAGA
TGCAGTCCGTGCAGCAAAGCAGCAGTGCAGCGCAGCTATGGGCAAGCTCTACACCTTCAGCACT
TCCCTCTCGAGCCAGGACAGAGAAGTCCTGTCTCGGGAAATCATGTCCCTCATCAGCCAGGTGA
AGGGACATCTACACGTTCAAAGCTTCCCAAATGCAGATGATAGATCTTATGTCCCAGAGAGTTT
CACGTGTGGTTTAGATAGGCCCATCTTGCATGGGCACGTGGATTTCCAACAGCTTCTCGAAACC
TACTCCCAGCACCATACTTCAGTGTGCGAGGTATTTGAAAGCACGTGTAGGAACAGCAGAGGCC
ACCAGAGAGACGCAAAGGCAGAGGTCTGTATCACCACTCTGAAGACGGAAACAAGCACTATAGA
TACTGTGGGGGTTACTCTAGAGAAAGTGTGCTCCCAAGACAGCGGGAGTACAGCTTATTCCAAG
ATGTCTGAGAAAGATTGGGAGAAGCTCCAAAGAGTAAGGAGGAGAAACTGGACCCATTCCGAGG
CGTTTCGAGTCTCCCTGGATCAAGATACGGGGACGGAGACTGAGCTACCAAACCACAGCAATGG
CAGGGCAGATGTCTCCAGCAAGCCTCTGAGAGACAGCTCTAGCTCGAGTTCTTGGAGCAGACTG
TCAGGGCTCAGCTCTTCCGCAAGCTGGGAGGAAGTGAACGGTGCTGTTCAGGATACAGAAAGGA
AAGAGTCTAGCCAAGAGGAACATCTTGTGGACACTCAATGCTCCACAGCAGTGTCTGAGGAACC
CGAGGGGGACAGACGTATATGTAGAGAGACGTATTTGCTGTTTTCCAAGCTCCACGGTGTCTCT
CTTCAGACGACCGAAGATCACAATGCAGAGTCTTCACAAAGTCAGTTACACACACCCGCCCTTC
CTCTCAACTCGACGACCACTTGTTTGGCCTCAGATGCAGGGCTCTTAGAACCCCCTGAAGGATC
CAACACTACTTCTCTTCAGTCCAGTCCTTCATGTGGTTCTGATGCCTGGTCCTTGGCTAGTTTG
GGCAGGTTCACAGCTGTGACCACATATCCTTCAGTTCAGGAAGAAGAAACTTCTGGAATAATTG
GTGATTTCCCAGAATCCAAGTATGACTTCAAAGACTGGAGTGGAGAAAAGAATGAGGGAAAACT
CACTGAAATATGCACGGGGCCTGAATTAACGTTTGCCTCCTCCTCGGTAGACCCAGAAGGAGAC
ACGGCAGAAAGCACAGATGATGGCCCATCACACTCTCTGGTAGTCCCAGGAGGTTTACAAGGCA
GCCATTCAATGTCTACGCATCGGACTTCCTTTTCAGATTGGTCTGTTCAAAATGCTGACTCAGC
AAAGATTGGCTGCTCCGTCAAAGACGAAGCTGTGGACCCTGATGCTTCTACGGTGGATGAGGAG
GGCCAAATGCTTGACAGCACAGAGGTCTACTCCATTGGCCAAGATGGCGCTCACAGACCACGTG
CTTTAAGGTCCGGTCAGAGTGATGAGAGTCCAAAGTCCTTTGTAAATGGCCACGGTCCCTCCCC
TATCTTCGATGAGGACTTCAGCACCACAGAGGAAGGAGAGGAACTTGGGAGCATGCTGAAGAGT
AGCCAGAACTCCAGCTCATGCTCGCCGTGGTGGCTAAAATCACCCGCCTTTTCCCGCAGTTCGT
CTGAGGGGGAAAGCTCCTGGTCTCTGCTGAACTCTAGCCGAAGTTCCTTTGGCTCACTGACAGG
ACAGACCAGCCAAGAGATCCTTGAGGCTCGCACCCTGCAGCCTGATGACCTTGAAAAGCTTCTA
GCAGGGGTGAGGCATGATTGGCTGCTTCAGAGACTGGAGAATACAGGAGTTTTGAAGTCCAATC
AACTCCAACAAGCACACAGTGCCCTCCTGCTAAAATATTCCAAAAAGTCTGAGTTGTGGACGGC
CCAGGAAACGGTGGTATATCTGGGAGACTACCTGAAAGTGAAGAAGAAGGGCAAGCAGAGAAAT
GCATTCTGGGTCCACTATCTCCATCAAGAGGAAACCCTGGGGAGATACGTTGGGAAAGAATATA
AAGAGCGGAAGGGGCTCCGGTACCACCTCACAGATGTGGAGCGGCAGATGACAGCGCAGCACTA
CGTGACAGAGTTTAACAAGAGACTCTACGAGCAAAAGATCCCAACGCAGATATTCTACATCCCG
TCCACAATATTGCTGATTTTGGAAGGCAGGACTATAAAGGGGTGCATCAGTGTGGAGCCTTACA
TCCTGGGAGAATTCGTCAAGTTATCAAATAACACCAAAGTCGTCAAGACCGAGTACAAAGCTAC
AGAATACGGCTTGGCCTACGGCCATTTTTCTTACGAGTTTTCTAACCACAGACATGTTGTGGTT
GATTTACAAGGTTGGGTGACTGGTAATGGAAAAGGCCTCATCTATCTCACAGATCCTCAGATTC
ACTCTGTAGATCAGAGAGACGTCACTACAAACTTTGGAAAGCGGGGCATATTTTACTTCTTTAA
TAACCAACATGCAAGCTGTAATGAAATATGCCATCGTCTTTCTCTGACGAGACCTTCACTAGAG
CAAACAAGTAAGATATAGGCAGTGGGTTGGGAGCCTAGCATCAAATCTGCCTCCTTCCAGGAAT
ACAAAGCGAGGCAAGTGTTGACGTATTGATCAGTTGGGCCAATGGATGATTCCAGCTATTGACT
TATGAGAGGAATACACAAGTGTTGATTTCAGGCCTACACTTGCTTGCCAGGACAAGATCCTGTA
GACCTGTTCCCTCTGACACAGGGGCATGTCTGGAGGCTGTCCTAGGCCTCACAGTTGTATATGA
TGTTCAGGGTCCTGAGTTGCATGAGGACAACATGGAAAAGGTCTCCAACCAACCCACAATGGAT
GCAAACTTGAGCTGGAAACAAACTGCTGTCATTAAGCCATTGTGATTTCTGTTTGTTTTGTTGT
TGCTTTGTGGGTTGGTTCTGGTTGGGTTGGGTTTTTGGTCTGTTTGGAGAGTTTTGTTTTTTTT
TTTTAATCTGTTAAAACTGATACTGTTGCTGCTTTCTTATTAACCAAAGAGTTCTTTGTAAATT
TAAAACATCCAGGCTCCTGAAAAGATTTCAATTGTCGTTTCCCTTTTAATATTTGCCATTTTGT
AAAACTGTTGTCCATACAGACTGTTCTTTTGACTGAGATGACTTCTTCACCTTTATTTCATGCT
TGTGTGTGATACCAGATATTTCTGTGTTCTGGGTTTCTTTCTGGTTCTCCCATGTTTTCTTCTA
GTATTTCTATCTATGAAAGGTGCGATGGAAGAGTGGTCACATACCACAGGGTCACCACAGCCTA
TTGCTTTCCCCATACATCTTCTTCACACAAGATTGGTAATTCCTTCTGCTGAAAGAATTGTATT
AATGCTCAGTGGTACCACCACATTTAAGGTGTGTCGCCTCACCTGGGTTAACACAATGTAGGAA
TTCCCTCATATACAGGCTTGGAGCTTTGTCTCCTAGATATTTCTATGTCTTGTCAAACTGACTA
TCAATACCCACCATCACGTACTGTGCTAAGGAAGTCCAGGATAAGGGGTGGTCATCAAGGGTTG
CAATGGAGTTTGTGTAGAAGGATGGACAGAGAATTGTATATCCTAGAATGAAGACGAAGCAGAG
GAAGCAAGAGTGACAGACTGGAGGGATGTGACAGCCAAAAATGCCGAGGAAGGGAGAGTGAACA
AGTGGAAAAAGGAAAATGGACAGCCACTAAGAAAAGAGAAGCATTGGATGACATCACAGGGCAG
GGAGGGTGAGAAGGTCGCACACCAAAACTACAACCCTTATTGGAACAGAAAAACAGCTGCCAGC
AGAATGGGCAGGGCCCCAGGGCTGGAAGTGCTCCCAAGGGCTCTGAGTATATCACTTTCTAGGA
TCCCGGGGCCCCACTCCTTCCTCACTGGGCCTGGGCCAGGTTATCTTCCCTTGCATGAGAAGAC
TTTGCATCAGCTGCAACGCCTTGGGTCCTGAGGGGTGTACATGTGGAGAGCAGCTCTGGGAGCA
CCAAGCAGCCCCTTTCAATTTACAATTGAATTCCTCTAAGCCCTTTCTCAAGAGCAACCTCCCA
TCCCATCCATTTTATTGCTGGATAATATTCCAAACTTCTAAAATCAATGTCTTCACTAAAAGTG
TGACTATAACTCCGGCCTGAAATAGCATTCTGAGGACATTTAGGACCTTTGAATACAGACTGAG
CTTTAGATGAAGTCACCAAGTCATGAAGTCCAAGCCAAGGAGAGCGAAACAGTGAGGGAGGGCA
CAGAGCATCATCTTTCCCTTGCATCTGCGCGGAGCCGGATGAGGGCACATGGGTTAGATTATAA
CACTCCGTGTACTTCCTCACAGATTCCTAATTTCCATACTTTTTCATAAATGTGAGGTAATTGA
AAGGAGTGCCAAATCAAATGAAGAGCGAACAGAGAGAGATGAGGGTGATCAAGATTTTTGGCAA
ACTAATCAAAAAGAAGTACAAGAAAGAGTAGCCAACGGCGTAAAATCCTACAGAAAAAAAAATC
AAGAAAAAATACAATATGTACTTACTTAATGAGGGAGTGGGGACAGTACGAAGTGATTGTGACA
ACAAGAAAGGCCATTAACTGACAGAGAGGTGTTAAATATCATAGAACTGAGGTCAGTAATCCTG
AGTCCATGCCCATGAGTCAAACCTACTGTGAAAGTCATTGGTCGTTAGAACAGTTTTTTTCAAT
GCTATTCTCTCTGAAGAGGTGGAGAAGAACTGCTGACCTGTGAACTCAGATTCACCCTCAAACC
CCCCAAATCAGGGGAAAGTGTAGGCCAAGGAAATCTACTTACCCTGCCTGTGGGATCTGGGCCT
GGTTAAAAGTGTACTTGACTTAGCAAACCTCCATATGAACAGCTCCTTCTAGAATAAAATGTGC
TACTTTCTCCTCTGGTTTCCAAATCCCTTGTCTGTAGGCCAGCAGAGCCATCAGATGATGGTGG
TACCCAGAAATCCCTCAATCAGCATCCTGGGGACTCATTCTGGGAAGCAGGTGGATCCTCTGTT
CAGGGTGCATAGCCAGGGACCATGCTGATGTGGGCCAGTCCTATCCCAATCCACTGCAGCTCCA
CTTCCTGTTCCCCTCTTGCTGGGACCAGCATGGGTGTTTGTTGTACTCAAGCTATGCCCTTCTC
TGAGTCACTCCATATTTTGTAAAACCATGATTTTTCATTTTTCAGGCTTGCTCAGATAGATTCT
GTCTTAGAAACAACCTTTGGCTCCAGGTCAAGGTAGGGGGATGACCACGTCCCTGGGCAGATAA
GTAAACACCATCTGTCTGGCACCACCCACACAGCACAGGCTAATAAATGGCATTCCTTGGAGTA
GACAGGGTGAATTTACTGGGATGAATTGAGGCTGTACGGGCACACAGGTGTAATTAAAATCATA
CCAGGAAAACAAAATGTTCTAGGCACTTCTCTGTTGCTGTGTTAAAACACCACAGCCGAGGCAA
CTTAGAGAAGTTTATTTGGGCTTATGGTTGTGGAAGGATAAGAGTCTATGAT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001420078	(Get FASTA)	NCBI Sequence Viewer
	NP_001420079	(Get FASTA)	NCBI Sequence Viewer
	NP_001420080	(Get FASTA)	NCBI Sequence Viewer
	XP_017446831	(Get FASTA)	NCBI Sequence Viewer
	XP_038959989	(Get FASTA)	NCBI Sequence Viewer
	XP_038959990	(Get FASTA)	NCBI Sequence Viewer
	XP_063138988	(Get FASTA)	NCBI Sequence Viewer
	XP_227715	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL82154	(Get FASTA)	NCBI Sequence Viewer
	EDL82155	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000030809.4
	ENSRNOP00000104468
	ENSRNOP00000104468.1
	ENSRNOP00000107422
	ENSRNOP00000107422.1
	ENSRNOP00000107926.1
	ENSRNOP00000108175
	ENSRNOP00000108175.1

RefSeq Acc Id:

XP_227715 ⟸ XM_227715

- Peptide Label:

isoform X3

- Sequence:

show sequence

MNNQDAVASILHECKQVLDRLLLETPDVSTEDKGEDQRCRASLSGELRTLIQEAKEMKWPFVPE
KWQYKQAMSPEDKTNLQDVIGAGLQQLLAALRASILVQDCAAAAAIVFLMDRFLYGLDVSGKLL
QVAKGLHKLQPATPIAPQVVIRQARVSVNSGKLLKAEYILSSLICNSGATGTWLYRNESDKVLV
QSVCIQIRGQILQKLGMWYEAAELIWASVIGYLSLPQPDKKGISTSLGILADIFVSMSKTDYEK
FKKSPKVNLALLKEFDHRLLSAAEACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSCSADCPPGM
KSAYLREAKEAFEIGLLTKKDGELVSGKQELHSFIKAAFGLATVHCRLHGETDAVRAAKQQCSA
AMGKLYTFSTSLSSQDREVLSREIMSLISQVKGHLHVQSFPNADDRSYVPESFTCGLDRPILHG
HVDFQQLLETYSQHHTSVCEVFESTCRNSRGHQRDAKAEVCITTLKTETSTIDTVGVTLEKVCS
QDSGSTAYSKMSEKDWEKLQRVRRRNWTHSEAFRVSLDQDTGTETELPNHSNGRADVSSKPLRD
SSSSSSWSRLSGLSSSASWEEVNGAVQDTERKESSQEEHLVDTQCSTAVSEEPEGDRRICRETY
LLFSKLHGVSLQTTEDHNAESSQSQLHTPALPLNSTTTCLASDAGLLEPPEGSNTTSLQSSPSC
GSDAWSLASLGRFTAVTTYPSVQEEETSGIIGDFPESKYDFKDWSGEKNEGKLTEICTGPELTF
ASSSVDPEGDTAESTDDGPSHSLVVPGGLQGSHSMSTHRTSFSDWSVQNADSAKIGCSVKDEAV
DPDASTVDEEGQMLDSTEVYSIGQDGAHRPRALRSGQSDESPKSFVNGHGPSPIFDEDFSTTEE
GEELGSMLKSSQNSSSCSPWWLKSPAFSRSSSEGESSWSLLNSSRSSFGSLTGQTSQEILEART
LQPDDLEKLLAGVRHDWLLQRLENTGVLKSNQLQQAHSALLLKYSKKSELWTAQETVVYLGDYL
KVKKKGKQRNAFWVHYLHQEETLGRYVGKEYKERKGLRYHLTDVERQMTAQHYVTEFNKRLYEQ
KIPTQIFYIPSTILLILEGRTIKGCISVEPYILGEFVKLSNNTKVVKTEYKATEYGLAYGHFSY
EFSNHRHVVVDLQGWVTGNGKGLIYLTDPQIHSVDQRDVTTNFGKRGIFYFFNNQHASCNEICH
RLSLTRPSLEQTSKI

hide sequence

RefSeq Acc Id:

XP_017446831 ⟸ XM_017591342

- Peptide Label:

isoform X1

- Sequence:

show sequence

MNNQDAVASILHECKQVLDRLLLETPDVSTEDKGEDQRCRASLSGELRTLIQEAKEMKWPFVPE
KWQYKQAMSPEDKTNLQDVIGAGLQQLLKINVATKMRPTMTGEERAGTTSGKWPAPKTWVLGDY
FNCLKQMDFKEKGQNMCWSAMSENIISKAALRASILVQDCAAAAAIVFLMDRFLYGLDVSGKLL
QVAKGLHKLQPATPIAPQVVIRQARVSVNSGKLLKAEYILSSLICNSGATGTWLYRNESDKVLV
QSVCIQIRGQILQKLGMWYEAAELIWASVIGYLSLPQPDKKGISTSLGILADIFVSMSKTDYEK
FKKSPKVNLALLKEFDHRLLSAAEACKLAAAFSAYTPLFVLTAVNIRGTCLLSYSCSADCPPGM
KSAYLREAKEAFEIGLLTKKDGELVSGKQELHSFIKAAFGLATVHCRLHGETDAVRAAKQQCSA
AMGKLYTFSTSLSSQDREVLSREIMSLISQVKGHLHVQSFPNADDRSYVPESFTCGLDRPILHG
HVDFQQLLETYSQHHTSVCEVFESTCRNSRGHQRDAKAEVCITTLKTETSTIDTVGVTLEKVCS
QDSGSTAYSKMSEKDWEKLQRVRRRNWTHSEAFRVSLDQDTGTETELPNHSNGRADVSSKPLRD
SSSSSSWSRLSGLSSSASWEEVNGAVQDTERKESSQEEHLVDTQCSTAVSEEPEGDRRICRETY
LLFSKLHGVSLQTTEDHNAESSQSQLHTPALPLNSTTTCLASDAGLLEPPEGSNTTSLQSSPSC
GSDAWSLASLGRFTAVTTYPSVQEEETSGIIGDFPESKYDFKDWSGEKNEGKLTEICTGPELTF
ASSSVDPEGDTAESTDDGPSHSLVVPGGLQGSHSMSTHRTSFSDWSVQNADSAKIGCSVKDEAV
DPDASTVDEEGQMLDSTEVYSIGQDGAHRPRALRSGQSDESPKSFVNGHGPSPIFDEDFSTTEE
GEELGSMLKSSQNSSSCSPWWLKSPAFSRSSSEGESSWSLLNSSRSSFGSLTGQTSQEILEART
LQPDDLEKLLAGVRHDWLLQRLENTGVLKSNQLQQAHSALLLKYSKKSELWTAQETVVYLGDYL
KVKKKGKQRNAFWVHYLHQEETLGRYVGKEYKERKGLRYHLTDVERQMTAQHYVTEFNKRLYEQ
KIPTQIFYIPSTILLILEGRTIKGCISVEPYILGEFVKLSNNTKVVKTEYKATEYGLAYGHFSY
EFSNHRHVVVDLQGWVTGNGKGLIYLTDPQIHSVDQRDVTTNFGKRGIFYFFNNQHASCNEICH
RLSLTRPSLEQTSKI

hide sequence

Ensembl Acc Id:

ENSRNOP00000030809 ⟸ ENSRNOT00000030798

RefSeq Acc Id:	XP_038959990 ⟸ XM_039104062
- Peptide Label:	isoform X2
- UniProtKB:	A6HVL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959989 ⟸ XM_039104061
- Peptide Label:	isoform X1
- UniProtKB:	A6HVL8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138988 ⟸ XM_063282918
- Peptide Label:	isoform X4
- UniProtKB:	A6HVL8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000107926 ⟸ ENSRNOT00000137029

Ensembl Acc Id:

ENSRNOP00000108175 ⟸ ENSRNOT00000144166

Ensembl Acc Id:

ENSRNOP00000107422 ⟸ ENSRNOT00000155515

Ensembl Acc Id:

ENSRNOP00000104468 ⟸ ENSRNOT00000124085

Protein Domains

Alpha-type protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTA7-F1-model_v2	AlphaFold	D3ZTA7	1-1231	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691748

Promoter ID:

EPDNEW_R2266

Type:

multiple initiation site

Name:

Alpk1_1

Description:

alpha-kinase 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	232,117,142 - 232,117,202	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1304613	AgrOrtholog
BioCyc Gene	G2FUF-51269	BioCyc
Ensembl Genes	ENSRNOG00000022636	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030798.7	UniProtKB/TrEMBL
	ENSRNOT00000124085	ENTREZGENE
	ENSRNOT00000124085.1	UniProtKB/TrEMBL
	ENSRNOT00000137029.1	UniProtKB/TrEMBL
	ENSRNOT00000144166	ENTREZGENE
	ENSRNOT00000144166.1	UniProtKB/TrEMBL
	ENSRNOT00000155515	ENTREZGENE
	ENSRNOT00000155515.1	UniProtKB/TrEMBL
Gene3D-CATH	MHCK/EF2 kinase	UniProtKB/TrEMBL
	Phosphorylase Kinase, domain 1	UniProtKB/TrEMBL
InterPro	ALPK1	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	MHCK_EF2_kinase	UniProtKB/TrEMBL
NCBI Gene	310879	ENTREZGENE
PANTHER	ALPHA-PROTEIN KINASE 1	UniProtKB/TrEMBL
	PTHR46747	UniProtKB/TrEMBL
Pfam	Alpha_kinase	UniProtKB/TrEMBL
PhenoGen	Alpk1	PhenoGen
PROSITE	ALPHA_KINASE	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000022636	RatGTEx
SMART	Alpha_kinase	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0ABK0LLW0_RAT	UniProtKB/TrEMBL
	A0ABK0LNX0_RAT	UniProtKB/TrEMBL
	A0ABK0LUQ6_RAT	UniProtKB/TrEMBL
	A0ABK0M164_RAT	UniProtKB/TrEMBL
	A6HVL8	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTA7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Alpk1	alpha-kinase 1	Alpk1_predicted	alpha-kinase 1 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Alpk1_predicted	alpha-kinase 1 (predicted)	RGD1304613_predicted	similar to lymphocyte alpha-kinase (predicted)	Symbol and Name updated	1299863	APPROVED
2005-01-20	RGD1304613_predicted	similar to lymphocyte alpha-kinase (predicted)	LOC310879_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC310879_predicted	similar to lymphocyte alpha-kinase (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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