Brd2 (bromodomain containing 2) - Rat Genome Database

Name: Brd2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Brd2 (bromodomain containing 2) Rattus norvegicus

Analyze

Symbol:

Brd2

Name:

bromodomain containing 2

RGD ID:

1303324

Description:

Predicted to enable chromatin binding activity; lysine-acetylated histone binding activity; and protein serine/threonine kinase activity. Predicted to be involved in several processes, including chromatin looping; nucleosome assembly; and positive regulation of T-helper 17 cell lineage commitment. Predicted to act upstream of or within neural tube closure. Predicted to be located in chromatin; cytoplasm; and nuclear speck. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in B-cell lymphoma; B-lymphoblastic leukemia/lymphoma; juvenile myoclonic epilepsy; and photosensitivity disease. Orthologous to human BRD2 (bromodomain containing 2); PARTICIPATES IN histone modification pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

bromodomain-containing 2; bromodomain-containing protein 2; LOC108348112; Ring3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BRD2 (bromodomain containing 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Brd2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Brd2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BRD2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BRD2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Brd2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BRD2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BRD2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Brd2 (bromodomain containing 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	LGALS8 (galectin 8)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	BRD2 (bromodomain containing 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Brd2 (bromodomain containing 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brd2a (bromodomain containing 2a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	brd2b (bromodomain containing 2b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BDF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	bet-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	fs(1)h	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	BDF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	tbrd-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	brd2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Is Marker For:

QTLs: Tcs1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,728,282 - 4,737,286 (+)	NCBI		GRCr8
mRatBN7.2	20	4,727,078 - 4,735,389 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,728,151 - 4,735,388 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,480,415 - 5,487,612 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,842,158 - 4,849,355 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	5,323,436 - 5,330,635 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,910,555 - 3,921,074 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,262,120 - 5,269,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,910,555 - 3,917,426 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,323,184 - 7,330,398 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,864,606 - 4,871,813 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	4,864,832 - 4,872,040 (+)	NCBI
Celera	20	6,328,831 - 6,336,038 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

B-cell lymphoma (ISO)

B-lymphoblastic leukemia/lymphoma (ISO)

glioblastoma (ISO)

hyperinsulinism (ISO)

juvenile myoclonic epilepsy (ISO)

medulloblastoma (ISO)

melanoma (ISO)

obesity (ISO)

photosensitivity disease (ISO)

proteasome-associated autoinflammatory syndrome 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(1->4)-beta-D-glucan (ISO)

(S)-nicotine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3'-diindolylmethane (ISO)

6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1-carboxamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

azoxystrobin (ISO)

benzatropine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chloroacetaldehyde (ISO)

chloropicrin (ISO)

cidofovir anhydrous (ISO)

cisplatin (ISO)

clodronic acid (ISO)

clofibrate (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

Cuprizon (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

diethyl malate (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenofibrate (EXP)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (ISO)

gentamycin (EXP)

ifosfamide (ISO)

inulin (ISO)

iron dichloride (ISO)

ivermectin (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

metformin (EXP)

methamphetamine (ISO)

methapyrilene (EXP)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-(6-acetamidohexyl)acetamide (ISO)

N-methylformamide (ISO)

nickel sulfate (ISO)

nicotine (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (ISO)

picoxystrobin (ISO)

pirinixic acid (ISO)

propiconazole (EXP)

pyrimidines (ISO)

quercetin (ISO)

quinazolines (ISO)

rac-lactic acid (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

temozolomide (ISO)

testosterone enanthate (ISO)

tetrachloromethane (EXP,ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

triticonazole (EXP)

trovafloxacin (ISO)

tungsten (ISO)

tunicamycin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin looping (ISO,ISS)

chromatin organization (IEA)

chromatin remodeling (IBA)

neural tube closure (ISO)

nucleosome assembly (ISO,ISS)

positive regulation of T-helper 17 cell lineage commitment (ISO,ISS)

protein localization to chromatin (ISO,ISS)

regulation of DNA-templated transcription (IBA)

regulation of gene expression (ISO)

regulation of transcription by RNA polymerase II (ISO,ISS)

Cellular Component

chromatin (IBA,ISO)

chromosome (IEA)

cytoplasm (ISO)

nuclear speck (IEA,ISO)

nucleoplasm (ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

acetylation-dependent protein binding (ISO)

chromatin binding (ISO,ISS)

lysine-acetylated histone binding (IBA,ISO,ISS)

protein binding (ISO)

protein serine/threonine kinase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Change in nuclear-cytoplasmic localization of a double-bromodomain protein during proliferation and differentiation of mouse spinal cord and dorsal root ganglia.	Crowley T, etal., Brain Res Dev Brain Res 2004 Apr 19;149(2):93-101.
2.	Reproductive cycle regulation of nuclear import, euchromatic localization, and association with components of Pol II mediator of a mammalian double-bromodomain protein.	Crowley TE, etal., Mol Endocrinol 2002 Aug;16(8):1727-37.
3.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4.	E mu-BRD2 transgenic mice develop B-cell lymphoma and leukemia.	Greenwald RJ, etal., Blood. 2004 Feb 15;103(4):1475-84. Epub 2003 Oct 16.
5.	Association of BRD2 polymorphisms with photoparoxysmal response.	Lorenz S, etal., Neurosci Lett. 2006 May 29;400(1-2):135-9. Epub 2006 Mar 3.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	BRD2 (RING3) is a probable major susceptibility gene for common juvenile myoclonic epilepsy.	Pal DK, etal., Am J Hum Genet 2003 Aug;73(2):261-70. Epub 2003 Jun 25.
8.	GOA pipeline	RGD automated data pipeline
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	The bromodomain: From epigenome reader to druggable target.	Sanchez R, etal., Biochim Biophys Acta. 2014 Aug;1839(8):676-685. doi: 10.1016/j.bbagrm.2014.03.011. Epub 2014 Mar 28.
11.	BRD4 sustains melanoma proliferation and represents a new target for epigenetic therapy.	Segura MF, etal., Cancer Res. 2013 Oct 15;73(20):6264-76. doi: 10.1158/0008-5472.CAN-13-0122-T. Epub 2013 Aug 15.
12.	Brd2 disruption in mice causes severe obesity without Type 2 diabetes.	Wang F, etal., Biochem J. 2009 Dec 14;425(1):71-83. doi: 10.1042/BJ20090928.

Additional References at PubMed

PMID:12477932	PMID:15060004	PMID:18406326

Genomics

Comparative Map Data

Brd2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	4,728,282 - 4,737,286 (+)	NCBI		GRCr8
mRatBN7.2	20	4,727,078 - 4,735,389 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	4,728,151 - 4,735,388 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	5,480,415 - 5,487,612 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	4,842,158 - 4,849,355 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	5,323,436 - 5,330,635 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	3,910,555 - 3,921,074 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	5,262,120 - 5,269,337 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	20	3,910,555 - 3,917,426 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	7,323,184 - 7,330,398 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	4,864,606 - 4,871,813 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	4,864,832 - 4,872,040 (+)	NCBI
Celera	20	6,328,831 - 6,336,038 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

BRD2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	32,968,594 - 32,981,505 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	32,968,594 - 32,981,505 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	32,936,371 - 32,949,282 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	33,044,415 - 33,057,059 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	33,044,414 - 33,057,059	NCBI
Celera	6	34,485,349 - 34,498,195 (+)	NCBI		Celera
Cytogenetic Map	6	p21.32	NCBI
HuRef	6	32,678,978 - 32,691,818 (+)	NCBI		HuRef
CHM1_1	6	32,937,242 - 32,950,091 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	32,789,953 - 32,802,871 (+)	NCBI		T2T-CHM13v2.0

Brd2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	34,330,993 - 34,341,581 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	34,330,997 - 34,341,608 (-)	Ensembl		GRCm39 Ensembl
GRCm38	17	34,112,019 - 34,122,814 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	34,112,023 - 34,122,634 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	34,248,964 - 34,258,692 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	33,722,473 - 33,730,354 (-)	NCBI		MGSCv36	mm8
Celera	17	36,864,043 - 36,873,770 (-)	NCBI		Celera
Cytogenetic Map	17	B1	NCBI
cM Map	17	17.98	NCBI

Brd2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	1,584,479 - 1,592,826 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955437	1,584,890 - 1,592,486 (+)	NCBI	ChiLan1.0	ChiLan1.0

BRD2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	47,443,604 - 47,456,467 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	43,315,229 - 43,328,092 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	32,538,130 - 32,550,823 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	33,657,488 - 33,666,054 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	33,657,648 - 33,666,031 (+)	Ensembl	panpan1.1		panPan2

BRD2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	2,534,034 - 2,546,029 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	2,534,034 - 2,546,029 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	2,615,604 - 2,627,599 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	2,864,982 - 2,876,982 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	12	2,864,927 - 2,876,950 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	12	2,533,065 - 2,545,060 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	2,614,613 - 2,626,605 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	2,689,162 - 2,701,159 (+)	NCBI		UU_Cfam_GSD_1.0

Brd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	38,145,455 - 38,153,085 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	25,807,163 - 25,818,899 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	25,807,179 - 25,818,914 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRD2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	25,152,043 - 25,162,578 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	25,096,579 - 25,162,591 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	29,463,191 - 29,529,204 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BRD2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	39,113,519 - 39,126,267 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	32,757,658 - 32,770,463 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brd2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	23,742,509 - 23,750,062 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624754	23,742,506 - 23,750,668 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Brd2
45 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	129
Count of miRNA genes:	92
Interacting mature miRNAs:	98
Transcripts:	ENSRNOT00000000535, ENSRNOT00000060194
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2306850	Pia40	Pristane induced arthritis QTL 40		0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	1527959	5304575	Rat
1354642	Despr15	Despair related QTL 15		0.0027	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	20	1	24159021	Rat
4889857	Pur27	Proteinuria QTL 27	12.2	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	4606607	17617956	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29191651	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29191651	Rat
7175096	Tcs1	T cell selection QTL 1			T cell selection trait (VT:0004917)	expression	20	4727078	5024580	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578807	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1530655	46530655	Rat
2317057	Aia27	Adjuvant induced arthritis QTL 27	2.83		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	20	2892597	26381954	Rat
61474	Eae1	Experimental allergic encephalomyelitis QTL 1	3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	20	4606607	6691706	Rat
7387283	Uae44	Urinary albumin excretion QTL 44		0.1712	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	20	1	26123605	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600972	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1527842	46527842	Rat
1600382	Edcs3	Endometrial carcinoma susceptibility QTL3	3.5	0.003	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	20	1	25159026	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	4606607	17617956	Rat
1331772	Cdexp2	CD45RC expression in CD8 T cells QTL 2	5.7		CD8-positive T cell quantity (VT:0008077)	blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)	20	3621649	10078919	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29191651	Rat
1300152	Bp195	Blood pressure QTL 195	3.46		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	3621649	9243559	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29191651	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29191651	Rat
2317851	Alcrsp22	Alcohol response QTL 22	3.2	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	2606836	47606836	Rat
61432	Cia1	Collagen induced arthritis QTL 1			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	20	3621656	14101050	Rat
1641893	Alcrsp7	Alcohol response QTL 7			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	20	1	27339237	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600972	Rat

Markers in Region

AW228947

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	20	5,990,258 - 5,990,366	NCBI	Rnor5.0
Rnor_5.0	20	7,330,134 - 7,330,242	NCBI	Rnor5.0
Rnor_5.0	10	61,374,939 - 61,375,047	NCBI	Rnor5.0
RGSC_v3.4	10	62,114,541 - 62,114,648	UniSTS	RGSC3.4
RGSC_v3.4	20	4,871,557 - 4,871,664	UniSTS	RGSC3.4
Celera	20	6,335,782 - 6,335,889	UniSTS
Cytogenetic Map	10	q24	UniSTS
Cytogenetic Map	20	p12	UniSTS

CGCb741

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	4,731,699 - 4,731,873 (-)	MAPPER	mRatBN7.2
mRatBN7.2	20	4,731,699 - 4,731,873 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	3,914,071 - 3,914,244	NCBI	Rnor6.0
Rnor_6.0	20	5,265,648 - 5,265,821	NCBI	Rnor6.0
Rnor_5.0	20	7,326,709 - 7,326,882	UniSTS	Rnor5.0
Rnor_5.0	20	5,993,619 - 5,993,792	UniSTS	Rnor5.0
RGSC_v3.4	20	4,868,131 - 4,868,304	UniSTS	RGSC3.4
Celera	20	6,332,356 - 6,332,529	UniSTS
Cytogenetic Map	20	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_212495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601579	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098498	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063279019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC098547	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX883042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226688	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232599	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000000535 ⟹ ENSRNOP00000000535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,728,151 - 4,735,382 (+)	Ensembl
Rnor_6.0 Ensembl	20	5,262,120 - 5,269,328 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000060194

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,730,185 - 4,735,382 (+)	Ensembl
Rnor_6.0 Ensembl	20	3,910,583 - 3,917,224 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000077454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	3,910,555 - 3,917,426 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080585 ⟹ ENSRNOP00000072049

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	20	4,728,518 - 4,735,388 (+)	Ensembl
Rnor_6.0 Ensembl	20	5,262,466 - 5,269,337 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082900 ⟹ ENSRNOP00000070430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	5,262,946 - 5,265,935 (+)	Ensembl

RefSeq Acc Id:

NM_212495 ⟹ NP_997660

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,730,079 - 4,737,286 (+)	NCBI
mRatBN7.2	20	4,728,175 - 4,735,382 (+)	NCBI
Rnor_6.0	20	3,910,562 - 3,917,769 (-)	NCBI
Rnor_5.0	20	7,323,184 - 7,330,398 (+)	NCBI
RGSC_v3.4	20	4,864,606 - 4,871,813 (+)	RGD
Celera	20	6,328,831 - 6,336,038 (+)	RGD

Sequence:

show sequence

GCAGCCTCTAGGACGAGCTGGAGGATTGTGCCTACTGACCCAGAGTCTTGGAGCCTCCGCGGGC
CGCCAGTACAATCCACGTCCATCCGCTCGGAAATGGCCTTCGTCCCGGCCCGTGACCGCTCCCG
GCGGACAGTGCAGACCCCATAGAAGCCCCCGAGGCTCCCCTTTCTCGGGCCCCGCCCAGTCCTC
GGAGTCTGTCCACCCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCTCT
GAAACCCCTGTTTGGTGCTCATCCGCCTCCATCGGAGGTCTGACGGGGCTCTTACCAACCCGCG
GCGGCCGCGGCAGGAAGAGGGGACCCCTGTCGACCGGCGGCGGGCCCAATTGACGGCGGTGTCC
AGTTTCGGGGACTGTCGAGCTTGCAGACTACGCTCTCCTGTGGTTCGCCGGCCGGCAGAGCCCG
CCGCCATTTTCCCGCTGTCGCCGCCTGCGGAGCGCGCCAAGCTGCCGGAGTTGTGCGGAGGACG
GCGCAGGAGACAGCGTTCGCGCCGGTCCCGCAGCGAGGCTGTCGCCTGGAGGGCCAAGGGCAGC
GGCCTTCCCCCCACGTCCCGGGTTATGCTGGGCCCGGCGGTGAGGGGAGCCGAGGCCACCCGGA
CTTCACGCAGCTGAGCGGCGACGGCGGTTCCCTGAGGTCAAGATGCTGCAAAACGTGACTCCCC
ACAAGCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGG
GAAAAGGATTCGAAAGCCTTCGCTGTTGTATGAGGGATTCGAGAGCCCCACAATGGCTTCTGTA
CCAGCTTTACAACTGGCCCCTGCCAACCCACCCCCTCCTGAGGTGTCCAATCCCAAAAAGCCAG
GACGAGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTAATGAAGGCTCTGTGGAAGCATCA
GTTTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTCTGCCGGATTATCACAAA
ATTATCAAACAGCCCATGGACATGGGAACTATCAAGAGGAGACTTGAAAACAATTACTACTGGG
CTGCCTCAGAATGTATGCAGGATTTTAACACCATGTTTACCAACTGTTATATTTACAACAAGCC
CACGGATGATATTGTCCTAATGGCACAGACACTGGAAAAGATCTTCTTACAGAAAGTGGCATCG
ATGCCACAAGAGGAGCAAGAGCTGGTGGTGACTATCCCTAAGAACAGCCATAAGAAGGGGGCCA
AGTTAGCAGCACTCCAGGGCAGTATTACCAGTGCCCATCAGGTGCCTGCTGTCTCTTCTGTGTC
GCATACAGCCCTGTATACACCACCACCTGAAATACCTACCACTGTCCTCAACATTCCCCACCCA
TCAGTCATCTCGTCTCCCCTTCTAAAGTCCCTGCATTCTGCTGGGCCCCCACTCCTTGCTGTAT
CAGCAGCTCCTCCAGCTCAGCCCCTTGCCAAGAAAAAAGGCGTTAAACGGAAAGCAGATACTAC
CACCCCTACACCTACAGCCATCCTGGCTCCCGGTTCCCCAGCTAGTCCTCCTGGGAGTCTTGAG
CCAAAGGCAGCACGGCTCCCTCCTATGCGCAGAGAGAGTGGCCGCCCAATCAAGCCCCCACGAA
AAGACTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAAAGGAAAGCTGTCAGAACAGTT
AAAACACTGCAATGGCATCCTGAAGGAGCTGCTCTCTAAGAAGCATGCTGCCTATGCCTGGCCT
TTCTATAAACCAGTGGACGCTTCTGCTCTTGGCCTTCATGACTACCATGACATCATTAAGCACC
CCATGGACCTCAGCACTGTCAAGCGGAAGATGGAGAACCGCGATTACCGGGATGCACAGGAGTT
TGCTGCTGATGTACGGCTCATGTTCTCCAACTGCTATAAGTACAATCCTCCAGACCACGATGTC
GTGGCTATGGCCCGGAAGTTACAGGATGTGTTTGAGTTCCGCTATGCCAAGATGCCAGATGAGC
CACTGGAACCAGGACCTTTACCTGTCTCTACTGCCTTGCCTCCCGGGTTGGCCAAATCCTCTTC
AGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAAGAGGATGAG
GAAGATGAGGAGGAGGAGAGTGAAAGCTCAGACTCCGAGGAAGAAAGGGCTCATCGCCTGGCAG
AGCTGCAAGAGCAGCTTCGGGCAGTTCATGAACAACTGGCTGCCCTATCCCAGGGCCCGATATC
TAAACCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAAAAGAAACGGAAGGCAGAGAAACATCGT
GGCCGAATTGGGATTGATGAAGATGATAAGGGGCCTAGGGCCCCTCGCCCACTTCAGCCCAAGA
AATCTAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACTCAGCCATCCTGGCTTCGGGAC
TTCTGCAGGAAGTAGCAACAAGCTGCCTAAAAAGGCTCAGAAGACTGCCCCACCTGTCCTTCCC
ACTGGCTATGATTCGGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTATGATGAAAAGAGACAGC
TAAGCCTGGATATCAATAAGTTACCTGGGGAAAAGCTGGGTCGAGTTGTACATATCATCCAAGC
CAGAGAGCCTTCTCTACGTGATTCAAATCCAGAAGAAATTGAGATTGATTTTGAAACACTCAAG
CCGTCCACACTTAGGGAGCTTGAACGATACGTTTTATCCTGCCTTCGAAAGAAACCCCGGAAGC
CCTATACTATTAGAAAACCTGTGGGGAAAACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGA
ACTAGAGAAGCGACTGCAGGATGTCAGTGGACAGCTTAACTCCACCAAAAAACCCCCCAAGAAA
GCGAGTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGTCCCGTCTCAGTGCTTCTAGTT
CGAGCTCAGACTCCAGCTCCTCCTCCTCGTCCTCATCTTCTTCAGACACCAGCGATTCAGACTC
GGGCTAAGGGCCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTGTACCACCCTT
CCCCACTTTTCCCTTGCTGTGACGCTTCTTCATCTCACCCCTCCATAGGAGAGCTGGCTCTGCA
GTGGGGAGGAATGCAGGGACACGGACAAAATAAGATTGAATTCCTAGCCCTGTTGGGTGTGATG
TCCCTGTTGAGGATGATGGGGGTGGGGCAAGGGTATGGGTGGGTGTGGGCATATGCCTGGCACC
AAGCCCCCTGAGCTGCAGCTGTCCTGTTCACTTCTAAGGGCCCTGTTTTGAGGTTTTAATTTAT
TTAAGCTAGGTGGTAAGGCTGGGGGTGTAGCGCCGTGGTCCGCCCTCCAGCCTCCATGGGGAGG
GAAGAAGAGGGAGCTCTTTTTGTTTTTTTACATTGACTTTTTTTTCTACTCTTCCCTTTACTTC
CACTCCATTTGGGGCCTGGGGATTTTAGTCACCTCTCCAGTTGGCCCCCAGACTGTCTTTTCTT
TCTTGATTCTAACTTGTAAATAAAGAAAATATTATTGAA

hide sequence

RefSeq Acc Id:

XM_008772772 ⟹ XP_008770994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,730,880 - 4,737,286 (+)	NCBI
mRatBN7.2	20	4,729,003 - 4,735,389 (+)	NCBI
Rnor_6.0	20	3,910,555 - 3,916,979 (-)	NCBI

Sequence:

show sequence

GCAGCTGTTGACGCGAGCTCGCGGAGGGGGCTGCGACGGTTTTGAAGCGGTGGCGGCGGCCCAG
GCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGGGAAA
AGGATTCGAAAGCCTTCGCTGTTGTATGAGGGATTCGAGAGCCCCACAATGGCTTCTGTACCAG
CTTTACAACTGGCCCCTGCCAACCCACCCCCTCCTGAGGTGTCCAATCCCAAAAAGCCAGGACG
AGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTAATGAAGGCTCTGTGGAAGCATCAGTTT
GCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTCTGCCGGATTATCACAAAATTA
TCAAACAGCCCATGGACATGGGAACTATCAAGAGGAGACTTGAAAACAATTACTACTGGGCTGC
CTCAGAATGTATGCAGGATTTTAACACCATGTTTACCAACTGTTATATTTACAACAAGCCCACG
GATGATATTGTCCTAATGGCACAGACACTGGAAAAGATCTTCTTACAGAAAGTGGCATCGATGC
CACAAGAGGAGCAAGAGCTGGTGGTGACTATCCCTAAGAACAGCCATAAGAAGGGGGCCAAGTT
AGCAGCACTCCAGGGCAGTATTACCAGTGCCCATCAGGTGCCTGCTGTCTCTTCTGTGTCGCAT
ACAGCCCTGTATACACCACCACCTGAAATACCTACCACTGTCCTCAACATTCCCCACCCATCAG
TCATCTCGTCTCCCCTTCTAAAGTCCCTGCATTCTGCTGGGCCCCCACTCCTTGCTGTATCAGC
AGCTCCTCCAGCTCAGCCCCTTGCCAAGAAAAAAGGCGTTAAACGGAAAGCAGATACTACCACC
CCTACACCTACAGCCATCCTGGCTCCCGGTTCCCCAGCTAGTCCTCCTGGGAGTCTTGAGCCAA
AGGCAGCACGGCTCCCTCCTATGCGCAGAGAGAGTGGCCGCCCAATCAAGCCCCCACGAAAAGA
CTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAAAGGAAAGCTGTCAGAACAGTTAAAA
CACTGCAATGGCATCCTGAAGGAGCTGCTCTCTAAGAAGCATGCTGCCTATGCCTGGCCTTTCT
ATAAACCAGTGGACGCTTCTGCTCTTGGCCTTCATGACTACCATGACATCATTAAGCACCCCAT
GGACCTCAGCACTGTCAAGCGGAAGATGGAGAACCGCGATTACCGGGATGCACAGGAGTTTGCT
GCTGATGTACGGCTCATGTTCTCCAACTGCTATAAGTACAATCCTCCAGACCACGATGTCGTGG
CTATGGCCCGGAAGTTACAGGATGTGTTTGAGTTCCGCTATGCCAAGATGCCAGATGAGCCACT
GGAACCAGGACCTTTACCTGTCTCTACTGCCTTGCCTCCCGGGTTGGCCAAATCCTCTTCAGAG
TCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAGGAAGAGGAGGAAGAGGATGAGGAAG
ATGAGGAGGAGGAGAGTGAAAGCTCAGACTCCGAGGAAGAAAGGGCTCATCGCCTGGCAGAGCT
GCAAGAGCAGCTTCGGGCAGTTCATGAACAACTGGCTGCCCTATCCCAGGGCCCGATATCTAAA
CCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAAAAGAAACGGAAGGCAGAGAAACATCGTGGCC
GAATTGGGATTGATGAAGATGATAAGGGGCCTAGGGCCCCTCGCCCACTTCAGCCCAAGAAATC
TAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACTCAGCCATCCTGGCTTCGGGACTTCT
GCAGGAAGTAGCAACAAGCTGCCTAAAAAGGCTCAGAAGACTGCCCCACCTGTCCTTCCCACTG
GCTATGATTCGGAGGAGGAGGAAGAAAGCAGGCCCATGAGTTATGATGAAAAGAGACAGCTAAG
CCTGGATATCAATAAGTTACCTGGGGAAAAGCTGGGTCGAGTTGTACATATCATCCAAGCCAGA
GAGCCTTCTCTACGTGATTCAAATCCAGAAGAAATTGAGATTGATTTTGAAACACTCAAGCCGT
CCACACTTAGGGAGCTTGAACGATACGTTTTATCCTGCCTTCGAAAGAAACCCCGGAAGCCCTA
TACTATTAGAAAACCTGTGGGGAAAACAAAGGAGGAACTGGCTTTGGAGAAGAAGCGGGAACTA
GAGAAGCGACTGCAGGATGTCAGTGGACAGCTTAACTCCACCAAAAAACCCCCCAAGAAAGCGA
GTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGTCCCGTCTCAGTGCTTCTAGTTCGAG
CTCAGACTCCAGCTCCTCCTCCTCGTCCTCATCTTCTTCAGACACCAGCGATTCAGACTCGGGC
TAAGGGCCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGACCGGACCCCTGTACCACCCTTCCCC
ACTTTTCCCTTGCTGTGACGCTTCTTCATCTCACCCCTCCATAGGAGAGCTGGCTCTGCAGTGG
GGAGGAATGCAGGGACACGGACAAAATAAGATTGAATTCCTAGCCCTGTTGGGTGTGATGTCCC
TGTTGAGGATGATGGGGGTGGGGCAAGGGTATGGGTGGGTGTGGGCATATGCCTGGCACCAAGC
CCCCTGAGCTGCAGCTGTCCTGTTCACTTCTAAGGGCCCTGTTTTGAGGTTTTAATTTATTTAA
GCTAGGTGGTAAGGCTGGGGGTGTAGCGCCGTGGTCCGCCCTCCAGCCTCCATGGGGAGGGAAG
AAGAGGGAGCTCTTTTTGTTTTTTTACATTGACTTTTTTTTCTACTCTTCCCTTTACTTCCACT
CCATTTGGGGCCTGGGGATTTTAGTCACCTCTCCAGTTGGCCCCCAGACTGTCTTTTCTTTCTT
GATTCTAACTTGTAAATAAAGAAAATATTATTGAAGTTTTGA

hide sequence

RefSeq Acc Id:

XM_017601578 ⟹ XP_017457067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,728,284 - 4,737,286 (+)	NCBI
mRatBN7.2	20	4,727,078 - 4,735,374 (+)	NCBI
Rnor_6.0	20	3,910,555 - 3,918,918 (-)	NCBI

Sequence:

show sequence

GAGGGCTGCAGAGCAGCGCCGCCGCCTCCTCGGCTCGCCCTCCTCCCTGGCGCTGACCGATGGA
AGAGGCGCTCCGTGGGGAGGACTCCCGGCCCGATGGGGGCGGGGGGCTTCAGTTCGCCCACGCT
GGGACGAGATGGGGCCAAGGAGCCGCGCCCGCTCTCCCCACCCTGACGCCGGAATAAGTTTGCA
GAGATTCTCCACTGCGGCGGCATCGCAACCAAGAGCTTTTTGCCGGCCCCGCCCGCGCAGCCCA
TCCCACTCTGCACCCCGCCCGCGCCGCCAATGGAGAAGCTGAGAATGGCGCGGCCAGCCCGCCG
CGGGCGATCGGCGGCGACTGGGTGCCTGCAAGCCCCGGAGGGCTCCGTCAGACCTGGAGGTGGG
GACGACGTGTTGCAGGCCCCGGGGAGATGGCGCCTACACGCCGCCATTCGGCCTGCATCTCTCC
CAGGGCTCGCCAAGCCACGGCGCATCCAATTGGCTCGGAGACATGGCGGGGTGCCTCTTCGCCT
TGGCTCTATGCGGCACTCTCCGGCCGGGTAATCGACGCCTTGGAACTGGAGTTTGTGACGTCAT
CCTTCAAGCGGACCAATAGGAAAGGCTCCCGCGAAGAGGCGGTCCTGCCTTCTCCCCTTGGCTT
CTTCGGGCGCGTGAGCGGGCGAGCACGCGCAGAGGGGGCGGGGGAGCTCGCGAGCAGGGTGGCG
CGCATGAGCAGCGAAGCTCCGCCCCTCCGGCTATATATAAAGCGCTGGCGCGGGGCTCGGCGGC
GCCATTTCGCGCTGGAGTGGAGCAGCCTCTAGGACGAGCTGGAGGATTGTGCCTACTGACCCAG
AGTCTTGGAGCCTCCGCGGGCCGCCAGTACAATCCACGTCCATCCGCTCGGAAATGGCCTTCGT
CCCGGCCCGTGACCGCTCCCGGCGGACAGTGCAGACCCCATAGAAGCCCCCGAGGCTCCCCTTT
CTCGGGCCCCGCCCAGTCCTCGGAGTCTGTCCACCCCTCTACTCCGCCCTCAAGAGGATTTCAA
AGATGGAGGCGGCGGCTCTCTGAAACCCCTGTTTGGTGCTCATCCGCCTCCATCGGAGGTCTGA
CGGGGCTCTTACCAACCCGCGGCGGCCGCGGCAGGAAGAGGGGACCCCTGTCGACCGGCGGCGG
GCCCAATTGACGGCGGTGTCCAGTTTCGGGGACTGTCGAGCTTGCAGACTACGCTCTCCTGTGG
TTCGCCGGCCGGCAGAGCCCGCCGCCATTTTCCCGCTGTCGCCGCCTGCGGAGCGCGCCAAGCT
GCCGGAGTTGTGCGGAGGACGGCGCAGGAGACAGCGTTCGCGCCGGTCCCGCAGCGAGGCTGTC
GCCTGGAGGGCCAAGGGCAGCGGCCTTCCCCCCACGTCCCGGGTTATGCTGGGCCCGGCGGTGA
GGGGAGCCGAGGCCACCCGGACTTCACGCAGCTGAGCGGCGACGGCGGTTCCCTGAGGTCAAGA
TGCTGCAAAACGTGACTCCCCACAAGCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGG
CCCAGAGGCAGCAGCACCAGGGAAAAGGATTCGAAAGCCTTCGCTGTTGTATGAGGGATTCGAG
AGCCCCACAATGGCTTCTGTACCAGCTTTACAACTGGCCCCTGCCAACCCACCCCCTCCTGAGG
TGTCCAATCCCAAAAAGCCAGGACGAGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTAAT
GAAGGCTCTGTGGAAGCATCAGTTTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTG
GGTCTGCCGGATTATCACAAAATTATCAAACAGCCCATGGACATGGGAACTATCAAGAGGAGAC
TTGAAAACAATTACTACTGGGCTGCCTCAGAATGTATGCAGGATTTTAACACCATGTTTACCAA
CTGTTATATTTACAACAAGCCCACGGATGATATTGTCCTAATGGCACAGACACTGGAAAAGATC
TTCTTACAGAAAGTGGCATCGATGCCACAAGAGGAGCAAGAGCTGGTGGTGACTATCCCTAAGA
ACAGCCATAAGAAGGGGGCCAAGTTAGCAGCACTCCAGGGCAGTATTACCAGTGCCCATCAGGT
GCCTGCTGTCTCTTCTGTGTCGCATACAGCCCTGTATACACCACCACCTGAAATACCTACCACT
GTCCTCAACATTCCCCACCCATCAGTCATCTCGTCTCCCCTTCTAAAGTCCCTGCATTCTGCTG
GGCCCCCACTCCTTGCTGTATCAGCAGCTCCTCCAGCTCAGCCCCTTGCCAAGAAAAAAGGCGT
TAAACGGAAAGCAGATACTACCACCCCTACACCTACAGCCATCCTGGCTCCCGGTTCCCCAGCT
AGTCCTCCTGGGAGTCTTGAGCCAAAGGCAGCACGGCTCCCTCCTATGCGCAGAGAGAGTGGCC
GCCCAATCAAGCCCCCACGAAAAGACTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAA
AGGAAAGCTGTCAGAACAGTTAAAACACTGCAATGGCATCCTGAAGGAGCTGCTCTCTAAGAAG
CATGCTGCCTATGCCTGGCCTTTCTATAAACCAGTGGACGCTTCTGCTCTTGGCCTTCATGACT
ACCATGACATCATTAAGCACCCCATGGACCTCAGCACTGTCAAGCGGAAGATGGAGAACCGCGA
TTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTCATGTTCTCCAACTGCTATAAGTAC
AATCCTCCAGACCACGATGTCGTGGCTATGGCCCGGAAGTTACAGGATGTGTTTGAGTTCCGCT
ATGCCAAGATGCCAGATGAGCCACTGGAACCAGGACCTTTACCTGTCTCTACTGCCTTGCCTCC
CGGGTTGGCCAAATCCTCTTCAGAGTCCTCCAGTGAGGAAAGTAGCAGTGAGAGCTCCTCTGAG
GAAGAGGAGGAAGAGGATGAGGAAGATGAGGAGGAGGAGAGTGAAAGCTCAGACTCCGAGGAAG
AAAGGGCTCATCGCCTGGCAGAGCTGCAAGAGCAGCTTCGGGCAGTTCATGAACAACTGGCTGC
CCTATCCCAGGGCCCGATATCTAAACCCAAGCGGAAGAGAGAGAAAAAGGAAAAAAAAAAGAAA
CGGAAGGCAGAGAAACATCGTGGCCGAATTGGGATTGATGAAGATGATAAGGGGCCTAGGGCCC
CTCGCCCACTTCAGCCCAAGAAATCTAAGAAAGCAGGTGGTGGGGGTAGCAATGCTACTACACT
CAGCCATCCTGGCTTCGGGACTTCTGCAGGAAGTAGCAACAAGCTGCCTAAAAAGGCTCAGAAG
ACTGCCCCACCTGTCCTTCCCACTGGCTATGATTCGGAGGAGGAGGAAGAAAGCAGGCCCATGA
GTTATGATGAAAAGAGACAGCTAAGCCTGGATATCAATAAGTTACCTGGGGAAAAGCTGGGTCG
AGTTGTACATATCATCCAAGCCAGAGAGCCTTCTCTACGTGATTCAAATCCAGAAGAAATTGAG
ATTGATTTTGAAACACTCAAGCCGTCCACACTTAGGGAGCTTGAACGATACGTTTTATCCTGCC
TTCGAAAGAAACCCCGGAAGCCCTATACTATTAGAAAACCTGTGGGGAAAACAAAGGAGGAACT
GGCTTTGGAGAAGAAGCGGGAACTAGAGAAGCGACTGCAGGATGTCAGTGGACAGCTTAACTCC
ACCAAAAAACCCCCCAAGAAAGCGAGTGAGAAGACAGAGTCATCTGCACAGCAAGTGGCAGTGT
CCCGTCTCAGTGCTTCTAGTTCGAGCTCAGACTCCAGCTCCTCCTCCTCGTCCTCATCTTCTTC
AGACACCAGCGATTCAGACTCGGGCTAAGGGCCAGGCCAGATGGGGCAGGAAGGCTCCGCAGGA
CCGGACCCCTGTACCACCCTTCCCCACTTTTCCCTTGCTGTGACGCTTCTTCATCTCACCCCTC
CATAGGAGAGCTGGCTCTGCAGTGGGGAGGAATGCAGGGACACGGACAAAATAAGATTGAATTC
CTAGCCCTGTTGGGTGTGATGTCCCTGTTGAGGATGATGGGGGTGGGGCAAGGGTATGGGTGGG
TGTGGGCATATGCCTGGCACCAAGCCCCCTGAGCTGCAGCTGTCCTGTTCACTTCTAAGGGCCC
TGTTTTGAGGTTTTAATTTATTTAAGCTAGGTGGTAAGGCTGGGGGTGTAGCGCCGTGGTCCGC
CCTCCAGCCTCCATGGGGAGGGAAGAAGAGGGAGCTCTTTTTGTTTTTTTACATTGACTTTTTT
TTCTACTCTTCCCTTTACTTCCACTCCATTTGGGGCCTGGGGATTTTAGTCACCTCTCCAGTTG
GCCCCCAGACTGTCTTTTCTTTCTTGATTCTAACTTGTAAATAAAGAAAATATTATTGAAGTTT
TGA

hide sequence

RefSeq Acc Id:

XM_039098498 ⟹ XP_038954426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,728,945 - 4,734,852 (+)	NCBI
mRatBN7.2	20	4,728,743 - 4,732,948 (+)	NCBI

RefSeq Acc Id:

XM_063279018 ⟹ XP_063135088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,728,282 - 4,737,286 (+)	NCBI

RefSeq Acc Id:

XM_063279019 ⟹ XP_063135089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	4,732,386 - 4,737,286 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_997660	(Get FASTA)	NCBI Sequence Viewer
	XP_008770994	(Get FASTA)	NCBI Sequence Viewer
	XP_017457067	(Get FASTA)	NCBI Sequence Viewer
	XP_038954426	(Get FASTA)	NCBI Sequence Viewer
	XP_063135088	(Get FASTA)	NCBI Sequence Viewer
	XP_063135089	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	CAE83937	(Get FASTA)	NCBI Sequence Viewer
	EDL96816	(Get FASTA)	NCBI Sequence Viewer
	EDL96817	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000000535.4
	ENSRNOP00000072049.2
	ENSRNOP00000082798.1
	ENSRNOP00055009865
	ENSRNOP00060008434
	ENSRNOP00065042150
GenBank Protein	Q6MGA9	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_997660 ⟸ NM_212495

- UniProtKB:

Q6MGA9 (UniProtKB/Swiss-Prot), A6JJF0 (UniProtKB/TrEMBL), A0A8I5ZYL9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLQNVTPHKLPGEGNAGLLGLGPEAAAPGKRIRKPSLLYEGFESPTMASVPALQLAPANPPPPE
VSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRR
LENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPK
NSHKKGAKLAALQGSITSAHQVPAVSSVSHTALYTPPPEIPTTVLNIPHPSVISSPLLKSLHSA
GPPLLAVSAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPASPPGSLEPKAARLPPMRRESG
RPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHD
YHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFR
YAKMPDEPLEPGPLPVSTALPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEESESSDSEE
ERAHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAEKHRGRIGIDEDDKGPRA
PRPLQPKKSKKAGGGGSNATTLSHPGFGTSAGSSNKLPKKAQKTAPPVLPTGYDSEEEEESRPM
SYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDFETLKPSTLRELERYVLSC
LRKKPRKPYTIRKPVGKTKEELALEKKRELEKRLQDVSGQLNSTKKPPKKASEKTESSAQQVAV
SRLSASSSSSDSSSSSSSSSSSDTSDSDSG

hide sequence

RefSeq Acc Id:	XP_017457067 ⟸ XM_017601578
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGA9 (UniProtKB/Swiss-Prot), A6JJF0 (UniProtKB/TrEMBL), A0A8I5ZYL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLQNVTPHKLPGEGNAGLLGLGPEAAAPGKRIRKPSLLYEGFESPTMASVPALQLAPANPPPPE VSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRR LENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQEEQELVVTIPK NSHKKGAKLAALQGSITSAHQVPAVSSVSHTALYTPPPEIPTTVLNIPHPSVISSPLLKSLHSA GPPLLAVSAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPASPPGSLEPKAARLPPMRRESG RPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHD YHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFR YAKMPDEPLEPGPLPVSTALPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEESESSDSEE ERAHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKAEKHRGRIGIDEDDKGPRA PRPLQPKKSKKAGGGGSNATTLSHPGFGTSAGSSNKLPKKAQKTAPPVLPTGYDSEEEEESRPM SYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDFETLKPSTLRELERYVLSC LRKKPRKPYTIRKPVGKTKEELALEKKRELEKRLQDVSGQLNSTKKPPKKASEKTESSAQQVAV SRLSASSSSSDSSSSSSSSSSSDTSDSDSG hide sequence

RefSeq Acc Id:	XP_008770994 ⟸ XM_008772772
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZYL9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASVPALQLAPANPPPPEVSNPKKPGRVTNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLP DYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQ KVASMPQEEQELVVTIPKNSHKKGAKLAALQGSITSAHQVPAVSSVSHTALYTPPPEIPTTVLN IPHPSVISSPLLKSLHSAGPPLLAVSAAPPAQPLAKKKGVKRKADTTTPTPTAILAPGSPASPP GSLEPKAARLPPMRRESGRPIKPPRKDLPDSQQQHQSSKKGKLSEQLKHCNGILKELLSKKHAA YAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYRDAQEFAADVRLMFSNCYKYNPP DHDVVAMARKLQDVFEFRYAKMPDEPLEPGPLPVSTALPPGLAKSSSESSSEESSSESSSEEEE EEDEEDEEEESESSDSEEERAHRLAELQEQLRAVHEQLAALSQGPISKPKRKREKKEKKKKRKA EKHRGRIGIDEDDKGPRAPRPLQPKKSKKAGGGGSNATTLSHPGFGTSAGSSNKLPKKAQKTAP PVLPTGYDSEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLRDSNPEEIEIDF ETLKPSTLRELERYVLSCLRKKPRKPYTIRKPVGKTKEELALEKKRELEKRLQDVSGQLNSTKK PPKKASEKTESSAQQVAVSRLSASSSSSDSSSSSSSSSSSDTSDSDSG hide sequence

Ensembl Acc Id:

ENSRNOP00000070430 ⟸ ENSRNOT00000082900

Ensembl Acc Id:

ENSRNOP00000072049 ⟸ ENSRNOT00000080585

Ensembl Acc Id:

ENSRNOP00000000535 ⟸ ENSRNOT00000000535

RefSeq Acc Id:	XP_038954426 ⟸ XM_039098498
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063135088 ⟸ XM_063279018
- Peptide Label:	isoform X1
- UniProtKB:	Q6MGA9 (UniProtKB/Swiss-Prot), A6JJF0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135089 ⟸ XM_063279019
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K1Z8 (UniProtKB/TrEMBL)

Protein Domains

Bromo NET

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6MGA9-F1-model_v2	AlphaFold	Q6MGA9	1-798	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303324	AgrOrtholog
BioCyc Gene	G2FUF-4548	BioCyc
Ensembl Genes	ENSRNOG00000000461	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00000045877	Ensembl
	ENSRNOG00055007432	UniProtKB/Swiss-Prot
	ENSRNOG00060006867	UniProtKB/Swiss-Prot
	ENSRNOG00065029616	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000000535.6	UniProtKB/Swiss-Prot
	ENSRNOT00000060194.5	UniProtKB/TrEMBL
	ENSRNOT00000080585.2	UniProtKB/TrEMBL
	ENSRNOT00055012429	UniProtKB/Swiss-Prot
	ENSRNOT00060011297	UniProtKB/Swiss-Prot
	ENSRNOT00065051209	UniProtKB/Swiss-Prot
Gene3D-CATH	1.20.1270.220	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	1.20.920.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Bromo_Brdt_I	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromo_Brdt_II	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromo_chromatin_reader	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromodomain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromodomain-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromodomain_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NET_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NET_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:294276	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	294276	ENTREZGENE
PANTHER	BROMODOMAIN-CONTAINING PROTEIN 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	BET	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Bromodomain	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Brd2	PhenoGen
PRINTS	BROMODOMAIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	BROMODOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	BROMODOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NET	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000461	RatGTEx
	ENSRNOG00000045877	RatGTEx
	ENSRNOG00055007432	RatGTEx
	ENSRNOG00060006867	RatGTEx
	ENSRNOG00065029616	RatGTEx
SMART	BROMO	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF47370	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2K1Z8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZYL9	ENTREZGENE, UniProtKB/TrEMBL
	A6JJF0	ENTREZGENE, UniProtKB/TrEMBL
	A6JJF1_RAT	UniProtKB/TrEMBL
	BRD2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Brd2	bromodomain containing 2	LOC108348112	bromodomain-containing protein 2	Data merged from RGD:11509343	737654	PROVISIONAL
2016-08-02	LOC108348112	bromodomain-containing protein 2			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-30	Brd2	bromodomain containing 2		bromodomain-containing 2	Name updated	1299863	APPROVED
2005-02-14	Brd2	bromodomain-containing 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations