Abhd16a (abhydrolase domain containing 16A, phospholipase) - Rat Genome Database

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Gene: Abhd16a (abhydrolase domain containing 16A, phospholipase) Rattus norvegicus
Analyze
Symbol: Abhd16a
Name: abhydrolase domain containing 16A, phospholipase
RGD ID: 1303164
Description: Predicted to enable monoacylglycerol lipase activity and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process; phosphatidylserine catabolic process; and prostaglandin catabolic process. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 86. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: abhydrolase domain containing 16A; abhydrolase domain-containing protein 16A; alpha/beta hydrolase domain-containing protein 16A; Bat5; HLA-B associated transcript 5; HLA-B-associated transcript 5; HLA-B-associated transcript 5 homolog; monoacylglycerol lipase ABHD16A; NG26; phosphatidylserine lipase ABHD16A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,723,756 - 3,738,617 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,723,757 - 3,738,736 (-)EnsemblGRCr8
mRatBN7.2203,719,089 - 3,733,952 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,418,104 - 4,433,262 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,780,160 - 3,795,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,318,217 - 4,333,175 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,080,070 - 5,094,935 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,080,070 - 5,094,935 (+)Ensemblrn6Rnor6.0
Rnor_5.0207,153,000 - 7,168,193 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,782,759 - 3,797,620 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,291,911 - 4,306,777 (+)NCBICelera
RGSC_v3.1203,782,984 - 3,797,821 (-)NCBI
Cytogenetic Map20p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. MHC-linked diabetogenic gene of the NOD mouse: molecular mapping of the 3' boundary of the diabetogenic region. Ikegami H, etal., Biochem Biophys Res Commun 1993 Apr 30;192(2):677-82.
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:25290914   PMID:25580854  


Genomics

Comparative Map Data
Abhd16a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8203,723,756 - 3,738,617 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl203,723,757 - 3,738,736 (-)EnsemblGRCr8
mRatBN7.2203,719,089 - 3,733,952 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx204,418,104 - 4,433,262 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0203,780,160 - 3,795,318 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0204,318,217 - 4,333,175 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,080,070 - 5,094,935 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,080,070 - 5,094,935 (+)Ensemblrn6Rnor6.0
Rnor_5.0207,153,000 - 7,168,193 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4203,782,759 - 3,797,620 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera204,291,911 - 4,306,777 (+)NCBICelera
RGSC_v3.1203,782,984 - 3,797,821 (-)NCBI
Cytogenetic Map20p12NCBI
ABHD16A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38631,686,955 - 31,703,324 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl631,686,954 - 31,703,356 (-)Ensemblhg38GRCh38
GRCh37631,654,732 - 31,671,101 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,762,715 - 31,779,067 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34631,762,714 - 31,779,067NCBI
Celera633,252,945 - 33,269,362 (-)NCBICelera
Cytogenetic Map6p21.33NCBI
HuRef631,440,951 - 31,457,370 (-)NCBIHuRef
CHM1_1631,656,862 - 31,673,273 (-)NCBICHM1_1
T2T-CHM13v2.0631,539,989 - 31,556,359 (-)NCBIT2T-CHM13v2.0
Abhd16a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,308,210 - 35,321,963 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1735,308,239 - 35,321,963 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381735,089,234 - 35,102,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,089,263 - 35,102,987 (+)Ensemblmm10GRCm38
MGSCv371735,226,236 - 35,239,932 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361734,697,347 - 34,711,043 (+)NCBIMGSCv36mm8
Celera1738,185,979 - 38,199,670 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.59NCBI
Abhd16a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955437227,407 - 241,830 (-)Ensembl
ChiLan1.0NW_004955437227,407 - 241,702 (-)NCBIChiLan1.0ChiLan1.0
ABHD16A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2546,164,503 - 46,180,725 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1642,126,016 - 42,142,219 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0631,348,640 - 31,364,777 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1632,238,872 - 32,253,856 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,238,872 - 32,253,856 (-)EnsemblpanPan2panpan1.1
ABHD16A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,167,723 - 1,182,520 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,167,721 - 1,182,453 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha121,304,284 - 1,319,089 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0121,313,091 - 1,327,889 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl121,313,089 - 1,328,210 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1121,172,393 - 1,187,217 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0121,239,568 - 1,254,388 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0121,306,774 - 1,321,843 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Abhd16a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,716,402 - 35,732,375 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367271,828,905 - 1,844,967 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049367271,828,966 - 1,843,334 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABHD16A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,800,932 - 23,814,947 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1723,800,932 - 23,814,920 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,448,853 - 27,451,015 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABHD16A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,320,749 - 40,336,922 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,320,878 - 40,336,720 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604431,598,745 - 31,614,930 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abhd16a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,505,606 - 24,520,092 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475424,505,572 - 24,520,092 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Abhd16a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1187,687,580 - 7,702,464 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Abhd16a
296 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:27
Interacting mature miRNAs:28
Transcripts:ENSRNOT00000001121
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2306850Pia40Pristane induced arthritis QTL 400.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)2015332005306452Rat
61474Eae1Experimental allergic encephalomyelitis QTL 13nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)2016693431Rat
2317057Aia27Adjuvant induced arthritis QTL 272.83joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)20126925056Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7387283Uae44Urinary albumin excretion QTL 440.1712urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)20126128279Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1354642Despr15Despair related QTL 150.0027locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)20124164241Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
1331772Cdexp2CD45RC expression in CD8 T cells QTL 25.7CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)20362632310078622Rat
8694189Bw153Body weight QTL 1533.130.001body mass (VT:0001259)body weight gain (CMO:0000420)20129193376Rat
70154Insul2Insulin level QTL 23.75blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)2016693431Rat
4889857Pur27Proteinuria QTL 2712.20.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)20127341128Rat
1300152Bp195Blood pressure QTL 1953.46arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2036263239244918Rat
9590109Sffal8Serum free fatty acids level QTL 85.320.01blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)20129193376Rat
9589155Insul32Insulin level QTL 326.380.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)20129193376Rat
9590275Scort15Serum corticosterone level QTL 153.480.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20129193376Rat
7411650Foco23Food consumption QTL 2320.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20129193376Rat
61432Cia1Collagen induced arthritis QTL 1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)20114100378Rat
2317851Alcrsp22Alcohol response QTL 223.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
1641893Alcrsp7Alcohol response QTL 7response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)20127341128Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat

Markers in Region
D20Yum51  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,738,742 - 3,738,964 (+)Marker Load Pipeline
mRatBN7.2203,734,077 - 3,734,302 (-)MAPPERmRatBN7.2
Rnor_6.0205,079,724 - 5,079,944NCBIRnor6.0
Rnor_5.0207,152,654 - 7,152,874UniSTSRnor5.0
RGSC_v3.4203,797,746 - 3,797,966UniSTSRGSC3.4
Celera204,291,547 - 4,291,785UniSTS
Cytogenetic Map20p12UniSTS
AI326074  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,719,539 - 3,719,746 (-)MAPPERmRatBN7.2
Rnor_6.0205,094,278 - 5,094,484NCBIRnor6.0
Rnor_5.0207,167,536 - 7,167,742UniSTSRnor5.0
Celera204,306,120 - 4,306,326UniSTS
Cytogenetic Map20p12UniSTS
RH138896  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2203,727,525 - 3,727,645 (-)MAPPERmRatBN7.2
Rnor_6.0205,086,381 - 5,086,500NCBIRnor6.0
Rnor_5.0207,159,639 - 7,159,758UniSTSRnor5.0
RGSC_v3.4203,791,194 - 3,791,313UniSTSRGSC3.4
Celera204,298,222 - 4,298,341UniSTS
RH 3.4 Map2052.52UniSTS
Cytogenetic Map20p12UniSTS
RH133704  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8203,723,797 - 3,724,058 (+)Marker Load Pipeline
mRatBN7.2203,719,130 - 3,719,391 (-)MAPPERmRatBN7.2
Rnor_6.0205,094,633 - 5,094,893NCBIRnor6.0
Rnor_5.0207,167,891 - 7,168,151UniSTSRnor5.0
RGSC_v3.4203,782,801 - 3,783,061UniSTSRGSC3.4
Celera204,306,475 - 4,306,735UniSTS
RH 3.4 Map2053.02UniSTS
Cytogenetic Map20p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000077082   ⟹   ENSRNOP00000071617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,723,757 - 3,738,736 (-)Ensembl
mRatBN7.2 Ensembl203,719,091 - 3,733,927 (-)Ensembl
Rnor_6.0 Ensembl205,080,166 - 5,094,710 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000078576   ⟹   ENSRNOP00000071276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,094,468 - 5,094,935 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079886
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,093,478 - 5,094,737 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081760   ⟹   ENSRNOP00000070241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,139 - 5,082,430 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083284   ⟹   ENSRNOP00000073114
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl203,719,091 - 3,733,879 (-)Ensembl
Rnor_6.0 Ensembl205,085,712 - 5,094,935 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083411   ⟹   ENSRNOP00000068595
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,087,627 - 5,093,810 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000085611   ⟹   ENSRNOP00000069494
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,090,501 - 5,093,426 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000086950   ⟹   ENSRNOP00000072329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,070 - 5,082,430 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089490
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,090,781 - 5,094,185 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl205,080,127 - 5,081,691 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000120470   ⟹   ENSRNOP00000098134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,723,757 - 3,738,617 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000120471   ⟹   ENSRNOP00000098135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl203,723,757 - 3,738,617 (-)Ensembl
RefSeq Acc Id: NM_212531   ⟹   NP_997696
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,723,756 - 3,738,617 (-)NCBI
mRatBN7.2203,719,089 - 3,733,952 (-)NCBI
Rnor_6.0205,080,070 - 5,094,935 (+)NCBI
Rnor_5.0207,153,000 - 7,168,193 (+)NCBI
RGSC_v3.4203,782,759 - 3,797,620 (-)RGD
Celera204,291,911 - 4,306,777 (+)RGD
Sequence:
RefSeq Acc Id: XM_039098802   ⟹   XP_038954730
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,723,756 - 3,738,607 (-)NCBI
mRatBN7.2203,719,089 - 3,733,830 (-)NCBI
RefSeq Acc Id: XM_063279208   ⟹   XP_063135278
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,725,752 - 3,738,612 (-)NCBI
RefSeq Acc Id: XR_010060714
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,724,720 - 3,738,612 (-)NCBI
RefSeq Acc Id: XR_010060715
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8203,726,050 - 3,738,612 (-)NCBI
RefSeq Acc Id: NP_997696   ⟸   NM_212531
- UniProtKB: Q6MG55 (UniProtKB/Swiss-Prot),   A6KTT1 (UniProtKB/TrEMBL),   A0A0G2K4N8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071617   ⟸   ENSRNOT00000077082
Ensembl Acc Id: ENSRNOP00000069494   ⟸   ENSRNOT00000085611
Ensembl Acc Id: ENSRNOP00000070241   ⟸   ENSRNOT00000081760
Ensembl Acc Id: ENSRNOP00000071276   ⟸   ENSRNOT00000078576
Ensembl Acc Id: ENSRNOP00000068595   ⟸   ENSRNOT00000083411
Ensembl Acc Id: ENSRNOP00000073114   ⟸   ENSRNOT00000083284
Ensembl Acc Id: ENSRNOP00000072329   ⟸   ENSRNOT00000086950
RefSeq Acc Id: XP_038954730   ⟸   XM_039098802
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K0X5 (UniProtKB/TrEMBL),   A6KTT5 (UniProtKB/TrEMBL),   A0A0G2K4N8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063135278   ⟸   XM_063279208
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000098134   ⟸   ENSRNOT00000120470
Ensembl Acc Id: ENSRNOP00000098135   ⟸   ENSRNOT00000120471
Protein Domains
AB hydrolase-1   Phosphatidylserine Lipase ABHD16 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6MG55-F1-model_v2 AlphaFold Q6MG55 1-558 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701395
Promoter ID:EPDNEW_R11913
Type:initiation region
Name:Abhd16a_1
Description:abhydrolase domain containing 16A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0205,080,134 - 5,080,194EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303164 AgrOrtholog
BioCyc Gene G2FUF-4643 BioCyc
Ensembl Genes ENSRNOG00000056637 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000077082 ENTREZGENE
  ENSRNOT00000120470 ENTREZGENE
Gene3D-CATH 3.40.50.1820 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317323 IMAGE-MGC_LOAD
InterPro AB_hydrolase UniProtKB/Swiss-Prot
  AB_hydrolase_1 UniProtKB/Swiss-Prot
  ABHD16_N UniProtKB/Swiss-Prot
KEGG Report rno:361796 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108968 IMAGE-MGC_LOAD
NCBI Gene 361796 ENTREZGENE
PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
  PTHR12277:SF54 UniProtKB/Swiss-Prot
Pfam ABHD16_N UniProtKB/Swiss-Prot
  Abhydrolase_1 UniProtKB/Swiss-Prot
PhenoGen Abhd16a PhenoGen
RatGTEx ENSRNOG00000056637 RatGTEx
Superfamily-SCOP SSF53474 UniProtKB/Swiss-Prot
UniProt A0A0G2K0X5 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K4N8 ENTREZGENE
  A0ABK0L7K7_RAT UniProtKB/TrEMBL
  A0ABK0LAP3_RAT UniProtKB/TrEMBL
  A6KTT1 ENTREZGENE, UniProtKB/TrEMBL
  A6KTT5 ENTREZGENE, UniProtKB/TrEMBL
  ABHGA_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-13 Abhd16a  abhydrolase domain containing 16A, phospholipase  Abhd16a  abhydrolase domain containing 16A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-07-28 Abhd16a  abhydrolase domain containing 16A  Bat5  HLA-B associated transcript 5  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Bat5  HLA-B associated transcript 5      Symbol and Name status set to approved 1299863 APPROVED
2005-07-14 Bat5  HLA-B associated transcript 5      Symbol and Name status set to provisional 70820 PROVISIONAL