Osbpl9 (oxysterol binding protein-like 9)

Gene: Osbpl9 (oxysterol binding protein-like 9) Rattus norvegicus

Analyze

Symbol:

Osbpl9

Name:

oxysterol binding protein-like 9

RGD ID:

1311508

Description:

Predicted to enable sterol binding activity. Predicted to be involved in lipid transport. Predicted to be located in intracellular membrane-bounded organelle. Predicted to be active in Golgi apparatus; cytosol; and membrane. Orthologous to human OSBPL9 (oxysterol binding protein like 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC298369; MGC125192; oxysterol-binding protein-related protein 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OSBPL9 (oxysterol binding protein like 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Osbpl9 (oxysterol binding protein-like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Osbpl9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OSBPL9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OSBPL9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Osbpl9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	OSBPL9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OSBPL9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Osbpl9 (oxysterol binding protein like 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	OSBPL9 (oxysterol binding protein like 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Osbpl9 (oxysterol binding protein-like 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	osbpl9 (oxysterol binding protein-like 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1513	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	OSH7	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	obr-4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	OSH6	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	osbpl9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	129,047,776 - 129,190,838 (-)	NCBI		GRCr8
mRatBN7.2	5	123,819,106 - 123,962,213 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	123,819,104 - 123,962,196 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	126,435,199 - 126,577,951 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	128,158,272 - 128,301,016 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	128,209,554 - 128,352,310 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	128,694,407 - 128,839,435 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	128,694,803 - 128,839,433 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	132,534,671 - 132,679,334 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	130,409,248 - 130,554,704 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	130,415,068 - 130,565,266 (-)	NCBI
Celera	5	122,550,082 - 122,691,583 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

acrolein (ISO)

Aflatoxin B2 alpha (ISO)

alpha-phellandrene (ISO)

alpha-pinene (ISO)

amphetamine (EXP)

Aroclor 1254 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

clofibrate (ISO)

copper atom (ISO)

copper(0) (ISO)

dibutyl phthalate (EXP)

dicrotophos (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

fenthion (ISO)

finasteride (EXP)

flutamide (EXP)

gentamycin (EXP)

glafenine (EXP)

ivermectin (ISO)

lead(0) (ISO)

methoxychlor (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sulindac (EXP)

testosterone (ISO)

thioacetamide (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lipid transport (IEA)

Cellular Component

cytosol (IBA,ISO)

Golgi apparatus (IBA,ISO)

intracellular membrane-bounded organelle (ISO)

membrane (IBA)

Molecular Function

protein binding (ISO)

sterol binding (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Osbpl9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	129,047,776 - 129,190,838 (-)	NCBI		GRCr8
mRatBN7.2	5	123,819,106 - 123,962,213 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	123,819,104 - 123,962,196 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	126,435,199 - 126,577,951 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	128,158,272 - 128,301,016 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	128,209,554 - 128,352,310 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	128,694,407 - 128,839,435 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	128,694,803 - 128,839,433 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	132,534,671 - 132,679,334 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	130,409,248 - 130,554,704 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	130,415,068 - 130,565,266 (-)	NCBI
Celera	5	122,550,082 - 122,691,583 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

OSBPL9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	51,518,272 - 51,789,219 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	51,577,179 - 51,798,427 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	52,082,764 - 52,254,891 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	51,855,352 - 52,026,729 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	51,794,784 - 51,966,157	NCBI
Celera	1	50,369,074 - 50,541,429 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	50,199,128 - 50,371,528 (+)	NCBI		HuRef
CHM1_1	1	52,199,950 - 52,372,239 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	51,398,184 - 51,669,512 (+)	NCBI		T2T-CHM13v2.0

Osbpl9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	108,918,342 - 109,059,469 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	108,918,342 - 109,059,469 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	109,061,145 - 109,202,272 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	109,061,145 - 109,202,272 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	108,733,750 - 108,874,845 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	108,559,582 - 108,615,851 (-)	NCBI		MGSCv36	mm8
Celera	4	107,403,189 - 107,543,615 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	50.77	NCBI

Osbpl9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	7,299,003 - 7,446,053 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	7,298,410 - 7,446,091 (-)	NCBI	ChiLan1.0	ChiLan1.0

OSBPL9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	175,073,058 - 175,348,332 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	174,213,596 - 174,433,042 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	50,867,863 - 51,038,375 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	52,364,575 - 52,534,874 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	52,364,575 - 52,534,868 (+)	Ensembl	panpan1.1		panPan2

OSBPL9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	9,506,025 - 9,666,252 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	9,506,558 - 9,666,223 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	9,657,224 - 9,817,868 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	9,629,896 - 9,791,001 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	9,629,896 - 9,791,086 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	9,440,731 - 9,603,345 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	9,529,503 - 9,692,445 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	9,548,045 - 9,708,801 (-)	NCBI		UU_Cfam_GSD_1.0

Osbpl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	66,145,529 - 66,286,409 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936522	9,129,989 - 9,270,755 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OSBPL9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	160,388,677 - 160,566,369 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	160,388,713 - 160,566,381 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	148,091,813 - 148,269,300 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OSBPL9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	81,176,269 - 81,342,436 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	35,898,555 - 36,066,705 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Osbpl9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624859	1,352,552 - 1,507,855 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624859	1,352,103 - 1,507,867 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Osbpl9
688 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	415
Count of miRNA genes:	222
Interacting mature miRNAs:	264
Transcripts:	ENSRNOT00000065280
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	1	131345958	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	31663789	131345958	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	43726656	129132602	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55805606	132207589	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	58829236	128034027	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	66174080	124160948	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	79584860	124584860	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	79584860	124584860	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	79584860	124584860	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84132602	129132602	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	87468046	132468046	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	87468046	132468046	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	87765973	132765973	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	90067849	128034027	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	90067849	128034027	Rat
631527	Tls1	T-lymphoma susceptibility QTL 1	0	0.001	thymus integrity trait (VT:0010555)	post-insult time to onset of T-cell lymphoma (CMO:0001907)	5	90450144	135450144	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
7794739	Bp372	Blood pressure QTL 372		0.0058	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	117913688	125222967	Rat
1582230	Bw78	Body weight QTL 78	3.2	0.0016	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	5	119085612	128034027	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat

Markers in Region

D5Uwm33

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	5	122,668,717 - 122,668,919	UniSTS
Cytogenetic Map	5	q35	UniSTS

D5Uwm37

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	123,935,167 - 123,935,338 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	128,812,684 - 128,812,854	NCBI	Rnor6.0
Rnor_5.0	5	132,651,935 - 132,652,105	UniSTS	Rnor5.0
RGSC_v3.4	5	130,527,319 - 130,527,490	RGD	RGSC3.4
RGSC_v3.4	5	130,527,320 - 130,527,490	UniSTS	RGSC3.4
RGSC_v3.1	5	130,532,545 - 130,532,716	RGD
Celera	5	122,664,816 - 122,664,986	UniSTS
Cytogenetic Map	5	q35	UniSTS

PMC293425P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	17,899,780 - 17,899,940 (+)	MAPPER	mRatBN7.2
mRatBN7.2	19	17,899,625 - 17,899,758 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	23,277,852 - 23,278,144	NCBI	Rnor6.0
Rnor_5.0	5	132,668,335 - 132,669,065	UniSTS	Rnor5.0
Rnor_5.0	19	34,267,765 - 34,268,057	UniSTS	Rnor5.0
RGSC_v3.4	5	130,543,705 - 130,544,435	UniSTS	RGSC3.4
Cytogenetic Map	19	p11	UniSTS
Cytogenetic Map	5	q35	UniSTS

RH134830

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	123,821,224 - 123,821,422 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	128,696,526 - 128,696,723	NCBI	Rnor6.0
Rnor_5.0	5	132,536,790 - 132,536,987	UniSTS	Rnor5.0
RGSC_v3.4	5	130,411,367 - 130,411,564	UniSTS	RGSC3.4
Celera	5	122,552,201 - 122,552,398	UniSTS
RH 3.4 Map	5	812.7	UniSTS
Cytogenetic Map	5	q35	UniSTS

RH140980

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	123,819,220 - 123,819,400 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	128,694,522 - 128,694,701	NCBI	Rnor6.0
Rnor_5.0	5	132,534,786 - 132,534,965	UniSTS	Rnor5.0
RGSC_v3.4	5	130,409,363 - 130,409,542	UniSTS	RGSC3.4
Celera	5	122,550,197 - 122,550,376	UniSTS
RH 3.4 Map	5	809.9	UniSTS
Cytogenetic Map	5	q35	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039109571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287388	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287390	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063287391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089838	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP491124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP492064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV110264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000065280 ⟹ ENSRNOP00000063374

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,962,196 (-)	Ensembl
Rnor_6.0 Ensembl	5	128,695,002 - 128,839,433 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000089441 ⟹ ENSRNOP00000074997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,844,004 (-)	Ensembl
Rnor_6.0 Ensembl	5	128,694,803 - 128,730,446 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000095896 ⟹ ENSRNOP00000095283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,962,177 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105115 ⟹ ENSRNOP00000081378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,104 - 123,821,115 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000105729 ⟹ ENSRNOP00000086199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,104 - 123,874,590 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108021 ⟹ ENSRNOP00000094735

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,962,196 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109561 ⟹ ENSRNOP00000092574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,118 - 123,962,196 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000117868 ⟹ ENSRNOP00000081857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,962,177 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000118637 ⟹ ENSRNOP00000097617

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,918,633 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000119557 ⟹ ENSRNOP00000085644

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	123,819,111 - 123,962,179 (-)	Ensembl

RefSeq Acc Id:

NM_001044234 ⟹ NP_001037699

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,190,819 (-)	NCBI
mRatBN7.2	5	123,819,106 - 123,962,179 (-)	NCBI
Rnor_6.0	5	128,694,407 - 128,839,435 (-)	NCBI
Rnor_5.0	5	132,534,671 - 132,679,334 (-)	NCBI
RGSC_v3.4	5	130,409,248 - 130,554,704 (-)	RGD
Celera	5	122,550,082 - 122,691,583 (-)	RGD

Sequence:

show sequence

AGATGGCGTCCATCGTGGAAGGGCCGCTGAGCAAATGGACTAACGTGATGAAGGGATGGCAGTA
TCGTTGGTTCGTGCTGGACTACAATGCAGGACTGCTCTCCTACTATACGTCCAAAGACAAAATG
ATGAGAGGCTCTCGAAGAGGATGCGTTAGACTCAGAGGAGCTGTGATTGGTATAGACGACGAGG
ACGACAGCACCTTCACAATCACTGTGGATCAGAAAACCTTCCACTTCCAGGCTCGAGATGCAGA
TGAGCGAGAGAAGTGGATCCATGCCTTAGAAGAAACCATTCTTCGCCATACTCTTCAGCTTCAA
GGTTTGGATTCAGGATTCGTTCCTAGTGTCCAAGACTTTGATAAGAAGCTCACTGAGGCTGACG
CTTACCTGCAGATCTTGATAGAACAATTGAAGCTTTTTGATGACAAGCTTCAAAATTGTAAGGA
TGATGAACAGAGAAAGAAAGTTGAAACCCTCAAAGACACAACAAATAGCATGGTAGAATCAATT
AAACACTGCATTGTGTTGCTACAGATTGCTAAAAGTACTATTAATCCTGTAGATGCAATATACC
AGCCTAGTCCCTTGGAGCCTGTGATCAGCACAATGCCTTCCCAGACTGTCTTACCTCCAGAACC
CGCTCAGTTGTGTAAGTCAGAGCAGCGTCCGTCCTCCCTGCCTGTTGGACCTGTGTTAGCTACC
TTGGGACATCATCAGACTCCAACACCAAATAGTACAGGCAGTGGGAATTCACCACCTAGCAGCA
GTCTAACTCCTCCCAGCCATGTCAACTTGTCTCCAAATACAGTCCCAGAGTTCTCTTACTCTAG
CAGTGAAGATGAGTTCTATGATGCTGATGAATTCCATCAAAGTGGCTCATCCCCAAAGCGCTTG
ATAGATTCTTCTGGATCTGCCTCAGTCCTGACACACAGCAGCTCTGGAAATAGCTTAAAACGCC
CAGACACCACAGAGTCACTGAATTCCTCCATGTCCAATGGCACAAGCGATGCTGATCTTTTTGA
CTCCCATGACGACAGAGATGAAGATGGGGAGGCAGGGTCAGTGGAGGAGCACAAGAGCGTTATC
ATGCACCTCTTATCCCAGGTCAGGCTCGGCATGGACCTCACAAAGGTAGTTCTTCCAACATTTA
TTCTCGAGAGAAGATCTCTGTTAGAAATGTATGCAGACTTTTTCGCACATCCCGACCTGTTCGT
GAGCATTAGTGATCAGAAGGACCCCAGGGATCGGATGGTTCAGGTTGTGAAATGGTACCTCTCG
GCCTTCCATGCAGGAAGGAGAGGATCAGTGGCCAAAAAGCCGTACAATCCTATTTTGGGTGAGA
TCTTTCAGTGCCACTGGACGTTGCCGAATGATACTGAAGAGAATGCAGAGCTCGTTTCAGAAGG
GCCGGTTCCCTGGGTGTCTAAGAACAGTGTAACATTTGTGGCTGAGCAAGTTTCCCATCATCCG
CCCATTTCAGCCTTTTATGCTGAGTGTTTTAACAAGAAGATACAATTCAATGCTCATATCTGGA
CTAAATCAAAATTCCTTGGGATGTCAATTGGGGTACACAACATAGGTCAGGGCTGTGTCTCGTG
TCTGGAGTATGGTGAGCACTACATCCTCACGTTCCCCAATGGCTATGGAAGGTCTATCTTGACA
GTGCCCTGGGTGGAATTAGGAGGAGAATGCAGTATTAACTGCTCCAAAACTGGCTACAGTGCAA
ATATCGTCTTCCACACCAAGCCGTTCTATGGCGGCAAGAAGCACAGAATTACTGCAGAGATTTT
TTCTCCAAATGACAAGAAATCCTTCTGCTCAATTGAAGGGGAATGGAATGGCATCATGTATGCA
AAATATGCAACCGGGGAAAATACTGTCTTTGTAGACACCAAGAAGTTGCCTATAATCAAGAAAA
AAGTGAGGAAGTTGGAAGATCAGAACGAGTATGAGTCCCGAAGCCTTTGGAAGGATGTCACTTT
CAATTTAAAAATCAGAGACATTGATGCAGCAACGGAAGCAAAGCACAGACTTGAAGAGAGACAA
AGAGCAGAAGCGCGAGAACGGAAGGAGAAGGAAATTCAGTGGGAGACGAGGCTCTTTCACGAAG
ATGGAGAATGCTGGGTTTACGATGAACCTTTACTGAAGCGTCTTGGTACTGTGAAGCATTAAGC
TGAACCGAGTTCACCGGGTGACCAGGGCAGTAGGCGTAACTAAGCAACAATCGATCTTCAGGAG
AACTTGTCACTTCCTTCTTAATGCGGTGGTTCCTATCTCAGGGATACTGGACTTGACACAGATG
AACAATTAAAGTGGAAAGCGCTTCCCTTTTCTCCTCTGTGGCAGTTACAATTTTGACTTCAGGC
CTGAGAAAAACTTCAGGTTTCGAAACATGATGTCTCCTCCTTTTCCAGGTCCCATGCTTTGAAA
AATATTTACAGAGTCCCAGGTCTCTGCTCCAGTCCTCCAGTTCTGCTGTTCAGGCCTAAATCCT
CATCTCCTAGTTCATATAATCTTGAGTTCTAGATACAAACACACAACAGCTGGCAGTTTTTCAC
AAGAACGCCCACCTGTACATACTGTTTCCTCAGAGTTGTCTAGAAAATCAGTGCAATGTATGAG
AATCAAGTGTTAGGGAATCTCATGGTCCCACCTATGACCTTTCTTTTAGAATTGAACTATGATT
AGATTGTATCTAAACCTGAAGTATAATTATATGCAATGCTTCTTAAAGCTTCATAAAATAATTT
TCCAACCTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039109559 ⟹ XP_038965487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,120,555 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,919,615 (-)	NCBI

RefSeq Acc Id:

XM_039109561 ⟹ XP_038965489

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,190,838 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,962,213 (-)	NCBI

RefSeq Acc Id:

XM_039109562 ⟹ XP_038965490

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,190,838 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,962,213 (-)	NCBI

RefSeq Acc Id:

XM_039109563 ⟹ XP_038965491

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,190,838 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,962,213 (-)	NCBI

RefSeq Acc Id:

XM_039109564 ⟹ XP_038965492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,298 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,874,563 (-)	NCBI

RefSeq Acc Id:

XM_039109566 ⟹ XP_038965494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,322 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,874,675 (-)	NCBI

RefSeq Acc Id:

XM_039109567 ⟹ XP_038965495

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,022 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,874,446 (-)	NCBI

RefSeq Acc Id:

XM_039109568 ⟹ XP_038965496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,322 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,874,675 (-)	NCBI

RefSeq Acc Id:

XM_039109569 ⟹ XP_038965497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,087 (-)	NCBI
mRatBN7.2	5	123,819,113 - 123,874,443 (-)	NCBI

RefSeq Acc Id:

XM_039109571 ⟹ XP_038965499

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,065,660 (-)	NCBI
mRatBN7.2	5	123,819,106 - 123,835,993 (-)	NCBI

RefSeq Acc Id:

XM_063287388 ⟹ XP_063143458

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,310 (-)	NCBI

RefSeq Acc Id:

XM_063287389 ⟹ XP_063143459

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,022 (-)	NCBI

RefSeq Acc Id:

XM_063287390 ⟹ XP_063143460

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,103,020 (-)	NCBI

RefSeq Acc Id:

XM_063287391 ⟹ XP_063143461

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	129,047,776 - 129,071,097 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001037699	(Get FASTA)	NCBI Sequence Viewer
	XP_038965487	(Get FASTA)	NCBI Sequence Viewer
	XP_038965489	(Get FASTA)	NCBI Sequence Viewer
	XP_038965490	(Get FASTA)	NCBI Sequence Viewer
	XP_038965491	(Get FASTA)	NCBI Sequence Viewer
	XP_038965492	(Get FASTA)	NCBI Sequence Viewer
	XP_038965494	(Get FASTA)	NCBI Sequence Viewer
	XP_038965495	(Get FASTA)	NCBI Sequence Viewer
	XP_038965496	(Get FASTA)	NCBI Sequence Viewer
	XP_038965497	(Get FASTA)	NCBI Sequence Viewer
	XP_038965499	(Get FASTA)	NCBI Sequence Viewer
	XP_063143458	(Get FASTA)	NCBI Sequence Viewer
	XP_063143459	(Get FASTA)	NCBI Sequence Viewer
	XP_063143460	(Get FASTA)	NCBI Sequence Viewer
	XP_063143461	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05829	(Get FASTA)	NCBI Sequence Viewer
	EDL90377	(Get FASTA)	NCBI Sequence Viewer
	EDL90378	(Get FASTA)	NCBI Sequence Viewer
	EDL90379	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000063374
	ENSRNOP00000063374.4
	ENSRNOP00000074997.2
	ENSRNOP00000081378.1
	ENSRNOP00000081857.1
	ENSRNOP00000085644
	ENSRNOP00000085644.1
	ENSRNOP00000086199
	ENSRNOP00000086199.1
	ENSRNOP00000092574
	ENSRNOP00000092574.1
	ENSRNOP00000094735
	ENSRNOP00000094735.1
	ENSRNOP00000095283
	ENSRNOP00000095283.1
	ENSRNOP00000097617
	ENSRNOP00000097617.1

RefSeq Acc Id:

NP_001037699 ⟸ NM_001044234

- UniProtKB:

A6JYX4 (UniProtKB/TrEMBL), A0A8I5ZT38 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASIVEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMRGSRRGCVRLRGAVIGIDDED
DSTFTITVDQKTFHFQARDADEREKWIHALEETILRHTLQLQGLDSGFVPSVQDFDKKLTEADA
YLQILIEQLKLFDDKLQNCKDDEQRKKVETLKDTTNSMVESIKHCIVLLQIAKSTINPVDAIYQ
PSPLEPVISTMPSQTVLPPEPAQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGNSPPSSS
LTPPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSLKRP
DTTESLNSSMSNGTSDADLFDSHDDRDEDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFI
LERRSLLEMYADFFAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEI
FQCHWTLPNDTEENAELVSEGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWT
KSKFLGMSIGVHNIGQGCVSCLEYGEHYILTFPNGYGRSILTVPWVELGGECSINCSKTGYSAN
IVFHTKPFYGGKKHRITAEIFSPNDKKSFCSIEGEWNGIMYAKYATGENTVFVDTKKLPIIKKK
VRKLEDQNEYESRSLWKDVTFNLKIRDIDAATEAKHRLEERQRAEARERKEKEIQWETRLFHED
GECWVYDEPLLKRLGTVKH

hide sequence

RefSeq Acc Id:

ENSRNOP00000063374 ⟸ ENSRNOT00000065280

RefSeq Acc Id:

ENSRNOP00000074997 ⟸ ENSRNOT00000089441

RefSeq Acc Id:	XP_038965499 ⟸ XM_039109571
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038965491 ⟸ XM_039109563
- Peptide Label:	isoform X4
- UniProtKB:	F1LRE5 (UniProtKB/TrEMBL), A6JYX5 (UniProtKB/TrEMBL), A0A8I5ZT38 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965490 ⟸ XM_039109562
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6A0M2 (UniProtKB/TrEMBL), A0A8I5ZT38 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965489 ⟸ XM_039109561
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6ANM6 (UniProtKB/TrEMBL), A0A8I5ZT38 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965487 ⟸ XM_039109559
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038965496 ⟸ XM_039109568
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I6B608 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965494 ⟸ XM_039109566
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A1S0 (UniProtKB/TrEMBL), A0A8I6B608 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965492 ⟸ XM_039109564
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6B608 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965495 ⟸ XM_039109567
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I6B608 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038965497 ⟸ XM_039109569
- Peptide Label:	isoform X11
- UniProtKB:	A0A8I6AVU6 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000097617 ⟸ ENSRNOT00000118637

RefSeq Acc Id:

ENSRNOP00000094735 ⟸ ENSRNOT00000108021

RefSeq Acc Id:

ENSRNOP00000092574 ⟸ ENSRNOT00000109561

RefSeq Acc Id:

ENSRNOP00000085644 ⟸ ENSRNOT00000119557

RefSeq Acc Id:

ENSRNOP00000081857 ⟸ ENSRNOT00000117868

RefSeq Acc Id:

ENSRNOP00000095283 ⟸ ENSRNOT00000095896

RefSeq Acc Id:

ENSRNOP00000086199 ⟸ ENSRNOT00000105729

RefSeq Acc Id:

ENSRNOP00000081378 ⟸ ENSRNOT00000105115

RefSeq Acc Id:	XP_063143458 ⟸ XM_063287388
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063143459 ⟸ XM_063287389
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063143460 ⟸ XM_063287390
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063143461 ⟸ XM_063287391
- Peptide Label:	isoform X13
- UniProtKB:	A6JYX6 (UniProtKB/TrEMBL)

Protein Domains

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LRE5-F1-model_v2	AlphaFold	F1LRE5	1-723	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693907

Promoter ID:

EPDNEW_R4432

Type:

single initiation site

Name:

Osbpl9_1

Description:

oxysterol binding protein-like 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	128,839,452 - 128,839,512	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311508	AgrOrtholog
BioCyc Gene	G2FUF-40365	BioCyc
Ensembl Genes	ENSRNOG00000033593	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065280.4	UniProtKB/TrEMBL
	ENSRNOT00000089441.2	UniProtKB/TrEMBL
	ENSRNOT00000095896	ENTREZGENE
	ENSRNOT00000095896.1	UniProtKB/TrEMBL
	ENSRNOT00000105115.1	UniProtKB/TrEMBL
	ENSRNOT00000105729.1	UniProtKB/TrEMBL
	ENSRNOT00000108021.1	UniProtKB/TrEMBL
	ENSRNOT00000109561.1	UniProtKB/TrEMBL
	ENSRNOT00000117868.1	UniProtKB/TrEMBL
	ENSRNOT00000118637.1	UniProtKB/TrEMBL
	ENSRNOT00000119557.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.2720	UniProtKB/TrEMBL
	2.30.29.30	UniProtKB/TrEMBL
	2.40.160.120	UniProtKB/TrEMBL
	3.30.70.3490	UniProtKB/TrEMBL
InterPro	OSBP_sf	UniProtKB/TrEMBL
	Oxysterol-bd	UniProtKB/TrEMBL
	Oxysterol-bd_CS	UniProtKB/TrEMBL
	PH_like_dom	UniProtKB/TrEMBL
	Pleckstrin_homology	UniProtKB/TrEMBL
KEGG Report	rno:298369	UniProtKB/TrEMBL
NCBI Gene	298369	ENTREZGENE
PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 9	UniProtKB/TrEMBL
	PTHR10972	UniProtKB/TrEMBL
Pfam	Oxysterol_BP	UniProtKB/TrEMBL
	PF00169	UniProtKB/TrEMBL
PhenoGen	Osbpl9	PhenoGen
PROSITE	OSBP	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000033593	RatGTEx
SMART	SM00233	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF144000	UniProtKB/TrEMBL
UniProt	A0A0G2K9H3_RAT	UniProtKB/TrEMBL
	A0A8I5ZT38	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZUX0_RAT	UniProtKB/TrEMBL
	A0A8I6A0M2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A1S0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AL53_RAT	UniProtKB/TrEMBL
	A0A8I6ANM6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AVU6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6B608	ENTREZGENE, UniProtKB/TrEMBL
	A6JYX4	ENTREZGENE, UniProtKB/TrEMBL
	A6JYX5	ENTREZGENE, UniProtKB/TrEMBL
	A6JYX6	ENTREZGENE, UniProtKB/TrEMBL
	F1LRE5	ENTREZGENE, UniProtKB/TrEMBL
	Q3KR91_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Osbpl9	oxysterol binding protein-like 9	Osbpl9_predicted	oxysterol binding protein-like 9 (predicted)	'predicted' is removed	2292626	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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