Bw78 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bw78 (Body weight QTL 78) Rattus norvegicus

Symbol: Bw78
Name: Body weight QTL 78
RGD ID: 1582230
Previously known as: Adiposity index (ln)
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 3.2
P Value: 0.0016
Variance: 11.0
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25119,085,612 - 128,034,027RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.05123,852,489 - 133,313,852RGD_MAPPER_PIPELINERnor6.0
Rnor_5.05127,710,120 - 137,108,002RGDRnor5.0
RGSC_v3.45125,254,995 - 134,872,385RGDRGSC3.4
RGSC_v3.15125,260,177 - 134,877,312RGD
Cross Type: intercross
Strains Crossed: PD/Cub BN/Cub 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/Cub  (IEA)
PD/Cub  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Dynamic genetic architecture of metabolic syndrome attributes in the rat. Seda O, etal., Physiol Genomics. 2005 Apr 14;21(2):243-52. Epub 2005 Feb 22.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2504Dio1iodothyronine deiodinase 15122074285122090983Rat
3642Scp2sterol carrier protein 25122806949122881259Rat
3210Nrdcnardilysin convertase5123755807123818910Rat
728909Pcsk9proprotein convertase subtilisin/kexin type 95121211278121233688Rat
631435Orc1origin recognition complex, subunit 15123324273123348375Rat
628770Dab1DAB adaptor protein 15118392953119513625Rat
620922Rab3bRAB3B, member RAS oncogene family5123629562123697410Rat
621139Bsndbarttin CLCNK type accessory subunit beta5121251774121260571Rat
628657Spata6spermatogenesis associated 65126593122126676557Rat
619820Mrpl37mitochondrial ribosomal protein L375121827892121846187Rat
620454Plpp3phospholipid phosphatase 35119927085120002206Rat
621502Ssbp3single stranded DNA binding protein 35121691370121828035Rat
1305174Magohmago homolog, exon junction complex subunit5122639268122646650Rat
2325Cdkn2ccyclin-dependent kinase inhibitor 2C5124411123124416278Rat
620893Prkaa2protein kinase AMP-activated catalytic subunit alpha 25119807992119879987Rat
2239C8bcomplement C8 beta chain5119535009119572565Rat
735206Yipf1Yip1 domain family, member 15122112144122147729Rat
2398Cpt2carnitine palmitoyltransferase 25122664677122682126Rat
1305550Eps15epidermal growth factor receptor pathway substrate 155124045865124146221Rat
70987Faf1Fas associated factor 15124426032124790014Rat
1306999Gpx7glutathione peroxidase 75123145151123153141Rat
1306529Dhcr2424-dehydrocholesterol reductase5121344552121371124Rat
1308525Echdc2enoyl CoA hydratase domain containing 25122915874122934860Rat
1305345Pars2prolyl-tRNA synthetase 2, mitochondrial5121433993121439158Rat
1305729Lrp8LDL receptor related protein 85122563468122635434Rat
1308030Glis1GLIS family zinc finger 15122222155122412141Rat
1309582Zyg11azyg-11 family member A, cell cycle regulator5122935439122973766Rat
1311928Slc1a7solute carrier family 1 member 75122731003122775139Rat
1359481Tceanc2transcription elongation factor A N-terminal and central domain containing 25121923959121963018Rat
1308355C8acomplement C8 alpha chain5119583168119637675Rat
1310856Zfyve9zinc finger FYVE-type containing 95123370677123529699Rat
1311508Osbpl9oxysterol binding protein-like 95123819106123962213Rat
1311774Btf3l4basic transcription factor 3-like 45123567902123587527Rat
1559493Cimap2ciliary microtubule associated protein 25121375998121401869Rat
1308173Dmrta2DMRT-like family A25124805883124811694Rat
1306799Usp24ubiquitin specific peptidase 245121080687121210321Rat
1305960Txndc12thioredoxin domain containing 125123587854123612886Rat
1308529Ttc4tetratricopeptide repeat domain 45121444712121462381Rat
1310313Tmem59transmembrane protein 595121962507121983625Rat
1306630Cc2d1bcoiled-coil and C2 domain containing 1B5123353289123367343Rat
1311383Slc5a9solute carrier family 5 member 95126709762126733468Rat
1307814Zyg11bzyg-11 family member B, cell cycle regulator5122985548123042735Rat
1308919Lrrc42leucine rich repeat containing 425122014678122035792Rat
1305274Coa7cytochrome c oxidase assembly factor 75123069356123080942Rat
1310138Tut4terminal uridylyl transferase 45123201723123306582Rat
1560027Elavl4ELAV like RNA binding protein 45125056848125200543Rat
1563467Cdcp2CUB domain containing protein 25121877581121894203Rat
1560921Dmrtb1DMRT-like family B with proline-rich C-terminal, 15122444853122452483Rat
1559786CzibCXXC motif containing zinc binding protein5122648333122657767Rat
1311126Ttc39atetratricopeptide repeat domain 39A5124165102124204740Rat
1311129Prpf38apre-mRNA processing factor 38A5123312461123324160Rat
1560173Ndc1NDC1 transmembrane nucleoporin5122155992122202295Rat
1561518Ttc22tetratricopeptide repeat domain 225121401973121423130Rat
1563440Mroh7maestro heat-like repeat family member 75121463826121509233Rat
1586386Trabd2bTraB domain containing 2B5127941198128158946Rat
1586416Rpl32l3ribosomal protein L32 like 35120631482120632245Rat
1587504Skint10selection and upkeep of intraepithelial T cells 105127769022127811541Rat
1584102Tmem61transmembrane protein 615121266799121276426Rat
1587555Zfp385b-ps1zinc finger protein 385B, pseudogene 15127270721127271910Rat
1587570Rps4x-ps3ribosomal protein S4, X-linked, pseudogene 35126842634126843859Rat
1587579Skint1selection and upkeep of intraepithelial T cells 15126786469126814599Rat
1566327Skint2selection and upkeep of intraepithelial T cells 25126878834126909044Rat
1584958Bend5BEN domain containing 55126290648126336662Rat
1584918Eef1a1-ps9eukaryotic translation elongation factor 1 alpha 1, pseudogene 95127824597127825986Rat
1584919Eno1-ps10enolase 1, pseudogene 105124325978124327290Rat
1591357Kti12KTI12 chromatin associated5123601059123602581Rat
1591090Calr4calreticulin 45123986870124022436Rat
1591038C5h1orf185similar to human chromosome 1 open reading frame 1855124276074124295881Rat
1359194Fam151afamily with sequence similarity 151, member A5121514804121527555Rat
1584843Actb-ps9actin, beta, pseudogene 95120658714120659243Rat
1564074Fyb2FYN binding protein 25119677116119800911Rat
1597398Ldlrad1low density lipoprotein receptor class A domain containing 15121984245122000941Rat
1596413Ift25intraflagellar transport 255122035588122062421Rat
1597451Cyb5rlcytochrome b5 reductase-like5121846223121868287Rat
1593542Shisal2ashisa like 2A5123110577123126501Rat
1588696Skint8selection and upkeep of intraepithelial T cells 85126764502126773125Rat
1597473Tlcd3b-ps1TLC domain containing 3B, pseudogene 15121681560121682371Rat
2318761Skint4l1selection and upkeep of intraepithelial T cells 4 like 15126999449127181460Rat
2321596Rnf11ring finger protein 115124212433124243125Rat
2325411Mir761microRNA 7615123776534123776609Rat
2324815Acot11acyl-CoA thioesterase 115121523833121581699Rat
6490490LOC100911818selection and upkeep of intraepithelial T-cells protein 10-like5127636227127678245Rat
6490949Skint4selection and upkeep of intraepithelial T cells 45127320857127514355Rat
6493177Agbl4AGBL carboxypeptidase 45125254963126534367Rat
6500146Btf3-ps13basic transcription factor 3, pseudogene 135122951278122951824Rat
7497822LOC102547167uncharacterized LOC1025471675121057292121078382Rat
7506262LOC102551042uncharacterized LOC1025510425122296655122299913Rat
7654450LOC102547236uncharacterized LOC1025472365119668167119673199Rat
7545693Podnpodocan5122774536122796755Rat
7546204Ankrd13c-ps1ankyrin repeat domain 13C, pseudogene 15127376753127380494Rat
7561791Dmrta2osldoublesex and mab-3 related transcription factor like family A2, opposite strand like5124800951124807191Rat
7548488LOC102551560uncharacterized LOC1025515605122474642122476368Rat
7604289LOC102549668uncharacterized LOC1025496685120006217120012535Rat
7585186Zc3hav1-ps9zinc finger CCCH-type containing, antiviral 1, pseudogene 95122692573122699273Rat
7738149LOC10255467240S ribosomal protein S27-like5123216877123218666Rat
7699232Dek-ps1DEK proto-oncogene, pseudogene 15127636795127645699Rat
9097677Prpmp5l1proline-rich protein MP5 like 15119140608119141297Rat
9112029Rpl28-ps1ribosomal protein L28, pseudogene 15121868202121868751Rat
9161289LOC103692433uncharacterized LOC1036924335120344175120357630Rat
11410745LOC108351012uncharacterized LOC1083510125123999719124012690Rat
11380122Sumo2l1small ubiquitin-like modifier 25119732630119735272Rat
11380980Skint5lselection and upkeep of intraepithelial T cells 5 like5127381307127435697Rat
41086853Rnu4-2RNA, U4 small nuclear 25124264229124264369Rat
41250028LOC120103276small nucleolar RNA SNORA2/SNORA34 family5122726968122727103Rat
41169774LOC120102947uncharacterized LOC1201029475121856050121859503Rat
41385175Traf3ip2-ps1Traf3 interacting protein 2, pseudogene 15127813498127814580Rat
41360960Rpl9-ps8ribosomal protein L9, pseudogene 85123483635123484270Rat
41260485LOC120102944uncharacterized LOC1201029445121408508121412443Rat
41364653LOC120102941uncharacterized LOC1201029415120664956120672754Rat
41264577LOC120103306small nucleolar RNA SNORA175124306820124306946Rat
41398365LOC120103349small nucleolar RNA SNORA405123218554123218681Rat
40980304LOC120103169uncharacterized LOC1201031695119673292119674938Rat
41104723Rnu6-67RNA, U6 small nuclear 675123280963123281069Rat
41296488LOC120102939uncharacterized LOC1201029395119887232119888833Rat
40998077LOC120102943uncharacterized LOC1201029435121360322121364747Rat
40985797Trnaa-agc38transfer RNA alanine (anticodon AGC) 385121943838121943912Rat
40937057LOC120103250U7 small nuclear RNA5122542313122542380Rat
40988753LOC120103293small nucleolar RNA SNORA485120966305120966422Rat
40970507LOC120102945uncharacterized LOC1201029455121621354121625108Rat
41311684LOC120102948uncharacterized LOC1201029485122301858122302471Rat
41078950LOC120103223U6 spliceosomal RNA5122805182122805288Rat
41134400LOC120103170uncharacterized LOC1201031705120785823120801032Rat
41247414LOC120102937uncharacterized LOC1201029375119526679119538134Rat
41030934Rpl9-ps7ribosomal protein L9, pseudogene 75123193865123195154Rat
41224678LOC120103289U2 spliceosomal RNA5120473916120474106Rat
41337561LOC120103121uncharacterized LOC1201031215123891920123896857Rat
41334530LOC120102946uncharacterized LOC1201029465121688135121689649Rat
41302851Rnu6-304RNA, U6 small nuclear 3045123754011123754111Rat
41308087LOC120102940uncharacterized LOC1201029405119967274119994416Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10262D5Rhm31335119564714119564847Ratregion
10263D5Rhm41455119592239119592384Ratregion
10324D5Lev191835124411616124411799Ratregion
35545D5Rat28945120740824120740915Ratregion
37944D5Rat831985119385986119386155Ratregion
37950D5Rat951605124048559124048658Ratregion
36667D5Rat542645120182440120182703Ratregion
39952D5Rat1582055119085612119085810Ratregion
38338D5Rat1081995128033842128034027Ratregion
40018D5Rat1651955127746389127746592Ratregion
40138D5Rat1601375122994775122994914Ratregion
40176D5Rat1631325123045178123045306Ratregion
39078D5Rat962295119429867119430093Ratregion
39092D5Rat652065125037723125037935Ratregion
42754D5Rat1981545119536444119536604Ratregion
42755D5Rat2592255120368789120369004Ratregion
41408D5Rat1621555120167910120168061Ratregion
44552D9Wox211365125373973125374029Ratregion
44552D9Wox211365126986761126986815Ratregion
43952D5Got452735125267791125268064Ratregion
43954D5Got471855124456846124457033Ratregion
43959D5Got1342345124129411124129641Ratregion
43960D5Got442775123783115123783392Ratregion
43961D5Got532735121550838121551111Ratregion
60485D5Got421815124160767124160948Ratregion
60486D5Got431485124299554124299701Ratregion
60487D5Got462895124074311124074597Ratregion
60488D5Got481875123142871123143055Ratregion
69558D5Uwm341665124153416124153572Ratregion
69567D5Uwm371775123935167123935338Ratregion
62483D5Uia11895123388476123388665Ratregion
66410D5Mco31345121352214121352347Ratregion
1630121D5Got3042445122224547122224791Ratregion
1627041Cpt22535122667705122667958Ratregion
1627439Nrd12595123755052123755311Ratregion
1639671D5Got2471875119393552119393734Ratregion
1633607D5Got2481985120656816120657014Ratregion
7777093D5Mco581625125222967125223129Ratregion
7206462Slc5a97335126709844126710577Ratregion
5035755D1S30211115119513438119513549Ratregion
5035853PMC240671P13825120658784120659043Ratregion
5038622AU0224662045124022072124022276Ratregion
5038624AA959731985124789846124789944Ratregion
5038626AI5271411345124791424124791558Ratregion
5036069Actb-rs12885120658727120659015Ratregion
7206532UniSTS:5469209045121436263121437167Ratregion
7206592Dmrta216095124808216124809825Ratregion
5036895AU0495451565125864606125864762Ratregion
5031226PMC104029P14525120658192120658630Ratregion
5031232PMC108483P14735120658748120659098Ratregion
5031260PMC117781P14665120658755120659098Ratregion
5031280PMC125345P14735120658748120659098Ratregion
5031304PMC133829P14735120658748120659098Ratregion
5034031RH1410931855123366930123367115Ratregion
5034083RH1412992005122834610122834822Ratregion
5026184RH1312392105121211277121211487Ratregion
5028819RH1424501695119813371119813540Ratregion
5028829RH1424871465122202133122202279Ratregion
5028853RH1425801115120006220120006335Ratregion
5031922AU0466961635121770462121770625Ratregion
5034826AA9437361545121983120121983274Ratregion
5029681BF4191781205121405345121405465Ratregion
5027091STS-Z40052525121828984121829036Ratregion
5029887BE0974042125124042150124042362Ratregion
5027261AI5056521465127378841127378987Ratregion
5027273AI875733815123818425123818506Ratregion
5027421AI988026905127469769127469859Ratregion
5024990RH1267532235121208167121208390Ratregion
5024992BB464020855125057610125057695Ratregion
5025294RH1277682025123787773123787975Ratregion
502795542.MMHAP10FF6.seq1805126675705126675885Ratregion
5033361RH1385511205121983414121983534Ratregion
5025502RH1285682125123612458123612670Ratregion
5030793AW5290751655122444893122445058Ratregion
5025678RH1292372195121370904121371123Ratregion
5028255D4Mit751305119684204119684334Ratregion
5031107BF4063181805119510309119510486Ratregion
5053719RH1428111705123347930123348100Ratregion
5056015RH1441341135122017313122017426Ratregion
5057259D5Lev21595119507794119507953Ratregion
5057490BG375960905126709807126709897Ratregion
5059590BE0973791505121376025121376175Ratregion
5059650BE0975391755123079367123079542Ratregion
5053059RH1424302155119571929119572144Ratregion
5053421RH1426391275122196463122196590Ratregion
5053551RH1427141755124800896124801071Ratregion
5050084RH1338532055119812692119812897Ratregion
5053953RH1429461295122201688122201817Ratregion
5041648RH1289781855123697183123697368Ratregion
5043938RH13031705121827954121828130Ratregion
5044134RH1304291805121208347121208527Ratregion
5045524RH1312271905124143896124144086Ratregion
5046508RH1317941945125067409125067603Ratregion
5045084RH1309742095123080639123080848Ratregion
5046194RH1316121875121518912121519099Ratregion
5049092RH1332811985119571960119572158Ratregion
5048056RH1326832155121527302121527517Ratregion
5049762RH1336671835121251829121252012Ratregion
5039570RH1277811935123818571123818764Ratregion
5042088RH1292322175121370904121371121Ratregion
5048608RH1330012125121266927121267139Ratregion
5042844RH1296782105120001921120002132Ratregion
5040404RH1282641825121828855121829037Ratregion
5040906RH1285511995123602135123602334Ratregion
5041072RH1286462095122807657122807866Ratregion
5043802RH1302361805119583218119583398Ratregion
5041354RH1288092065124791653124791859Ratregion
5041376RH1288212125121370912121371124Ratregion
5072484RH1368761505123697117123697267Ratregion
5072666RH1369821825122985794122985976Ratregion
5075770RH1387871805121535341121535521Ratregion
5075458RH1386051355122776582122776717Ratregion
5076002RH1389202185127376448127376666Ratregion
5079410RH1409801805123819220123819400Ratregion
5070626RH1346101815124789784124789965Ratregion
5070890RH1347652085122635144122635352Ratregion
5079290RH1408952085122807001122807209Ratregion
5071002RH1348301985123821224123821422Ratregion
5078816RH1405681865124804647124804833Ratregion
5078858RH1405921805123281631123281811Ratregion
5071176RH1349312085122996291122996499Ratregion
5073476RH1374581925123465410123465602Ratregion
5063320BF3987721205126296801126296921Ratregion
5066702AU0482011415126673606126673747Ratregion
5066742AU0481771595122168221122168375Ratregion
5070446AI323697825122664974122665056Ratregion
5070448AI8547331165121828677121828793Ratregion
5063566BF410958905119936995119937085Ratregion
5060504BE1102361525126206402126206554Ratregion
5062796AW5344661715119808709119808880Ratregion
5062094BF3974161415123137746123137887Ratregion
5063588BI3019952075122968657122968864Ratregion
5062194BE1063001705124669402124669572Ratregion
5064314BF3990851605123020640123020800Ratregion
5066228PMC122623P11225120658789120658908Ratregion
5066290PMC138011P16465120658792120659225Ratregion
5066300PMC145386P14655120658751120659093Ratregion
5061592BF4021061095124215449124215558Ratregion
5087321AI2376081705122062012122062182Ratregion
5087464PMC19354P14665120658752120659095Ratregion
5086427AI4123681725124023661124023833Ratregion
5086522BM3872141565125145934125146090Ratregion
5087259AI2295641735119195023119195196Ratregion
5087576PMC337033P21295125059245125059374Ratregion
5082971BF3905191575123368585123368742Ratregion
5089811AU0493771835120740728120740911Ratregion
5089479AU0491802255120164625120164850Ratregion
5088727AU0487432855119085674119085952Ratregion
5089737AU0493331305126296934126297064Ratregion
5084422AI169557935124411200124411292Ratregion
5090031AU0495092075125981263125981470Ratregion
5090703AU0499101935126386545126386738Ratregion
5080846RH1418161855123999787123999972Ratregion
5090439AU0497511785121926196121926374Ratregion
5089083AU0489442085123170033123170241Ratregion
5086058AW5294381525124276148124276300Ratregion
5086121BF3877681545123414944123415098Ratregion
5135463D5Uwm692055121238914121239104Ratregion
5135465D5Uwm701985122644113122644287Ratregion
5135467D5Uwm711855126673617126673763Ratregion
5135469D5Uwm722605125008980125009222Ratregion
5502701C1orf1651175126329451126329568Ratregion
5503196mActb05120658368120658774Ratregion
5504068px-5c81565125426959125427115Ratregion
5507643Dio15835122091100122091683Ratregion
5503992Dmrtb105122447528122448797Ratregion
5508206D5Uwm732505124400291124400525Ratregion
5504849ha25056535120716698120717351Ratregion
5506715SCP2965122868632122868728Ratregion
5499851UniSTS:2349962235123367012123367235Ratregion
5500262D1S2299E875125058161125058248Ratregion
5500368GDB:3526881095119547438119547547Ratregion
5501127PMC141153P12705124415101124415371Ratregion
5501131PMC141153P23365124411869124412205Ratregion
5502405RH1247451585124789789124789947Ratregion
6480632D5Uwm741855127833594127833751Ratregion
6480634D5Uwm755805124712419124712918Ratregion
Position Markers

Flank 1: (D5Rat158)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25119,085,612 - 119,085,810 (+)MAPPER
Rnor_6.05123,852,489 - 123,852,688NCBI
Rnor_5.05127,710,120 - 127,710,319UniSTS
RGSC_v3.45125,254,995 - 125,255,195RGD
RGSC_v3.45125,254,996 - 125,255,195UniSTS
RGSC_v3.15125,260,177 - 125,260,686RGD
Celera5117,647,838 - 117,648,037UniSTS
SHRSP x BN Map563.8099RGD
SHRSP x BN Map563.8099UniSTS
Peak: (D5Wox12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25129,098,910 - 129,099,034 (+)MAPPER
mRatBN7.25128,924,607 - 128,924,723 (+)MAPPER
Rnor_6.05134,469,651 - 134,469,772NCBI
Rnor_6.05134,197,905 - 134,198,020NCBI
Rnor_5.05138,259,613 - 138,259,734UniSTS
Rnor_5.05137,990,322 - 137,990,437UniSTS
RGSC_v3.45135,877,125 - 135,877,246UniSTS
RGSC_v3.45135,877,124 - 135,877,246RGD
RGSC_v3.15135,882,350 - 135,882,472RGD
Celera5127,636,602 - 127,636,723UniSTS
RH 3.4 Map5837.7RGD
RH 3.4 Map5837.7UniSTS
Cytogenetic Map5q36UniSTS
Flank 2: (D5Rat108)
Rat AssemblyChrPosition (strand)Source
mRatBN7.25128,033,842 - 128,034,027 (+)MAPPER
Rnor_6.05133,313,668 - 133,313,852NCBI
Rnor_5.05137,107,818 - 137,108,002UniSTS
RGSC_v3.45134,871,897 - 134,872,385RGD
RGSC_v3.45134,871,902 - 134,872,086UniSTS
RGSC_v3.15134,877,128 - 134,877,312RGD
Celera5126,688,474 - 126,688,658UniSTS
RH 3.4 Map5828.8UniSTS
RH 3.4 Map5828.8RGD
RH 2.0 Map5776.9RGD
SHRSP x BN Map566.0999RGD
Cytogenetic Map5q35UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1582212Livw2Liver weight QTL 23.50.0004liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)599016066119085810Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1300122Wbc1White blood cell count QTL 12.75leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)5125392826139989768Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5128033842133011550Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general these rats were on a high sucrose diet (HSD; 70% calories as sucrose) for 1 week; while still on sucrose diet, dexamethasone (DEX) was given in drinking water (0.026mg/ml) for 3 days then these animals were killed and the adiposity index was determined 1580752
qtl_statistics_details specific pairs of variables were compared by one or two way ANOVA with post hoc Tukey's honest significance difference test; linkage analysis was done on logarithm-transformed values 1580752