Gm14296 (predicted gene 14296) - Rat Genome Database

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Gene: Gm14296 (predicted gene 14296) Mus musculus
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Symbol: Gm14296
Name: predicted gene 14296
RGD ID: 9831220
MGI Page MGI
Description: Orthologous to human ZNF559-ZNF177 (ZNF559-ZNF177 readthrough); INTERACTS WITH antirheumatic drug (ortholog); arsane (ortholog); arsenic atom (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC102639598; zinc finger protein 431-like
RGD Orthologs
Human
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392176,584,302 - 176,619,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2176,584,302 - 176,619,602 (-)EnsemblGRCm39 Ensembl
GRCm382176,892,509 - 176,927,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2176,892,509 - 176,927,809 (-)EnsemblGRCm38mm10GRCm38
Celera2181,471,148 - 181,479,717 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:31675530  


Genomics

Comparative Map Data
Gm14296
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392176,584,302 - 176,619,606 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2176,584,302 - 176,619,602 (-)EnsemblGRCm39 Ensembl
GRCm382176,892,509 - 176,927,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2176,892,509 - 176,927,809 (-)EnsemblGRCm38mm10GRCm38
Celera2181,471,148 - 181,479,717 (+)NCBICelera
Cytogenetic Map2H4NCBI
cM Map299.11NCBI
ZNF781
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381937,667,751 - 37,692,315 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1937,667,751 - 37,692,315 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1937,668,579 - 37,676,393 (-)EnsemblGRCh38hg38GRCh38
GRCh371938,158,652 - 38,183,216 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361942,850,490 - 42,874,992 (-)NCBINCBI36Build 36hg18NCBI36
Celera1934,959,196 - 34,983,751 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1934,608,600 - 34,633,430 (-)NCBIHuRef
CHM1_11938,159,117 - 38,183,683 (-)NCBICHM1_1
T2T-CHM13v2.01940,469,493 - 40,494,068 (-)NCBIT2T-CHM13v2.0
LOC110598838
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530380,611,663 - 80,615,689 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365905,802,878 - 5,805,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF781
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366607310,279,245 - 10,292,071 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2276
Count of miRNA genes:836
Interacting mature miRNAs:1130
Transcripts:ENSMUST00000099007, ENSMUST00000108931, ENSMUST00000125090, ENSMUST00000134982, ENSMUST00000135176
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
1300867Lore2_mloss of righting induced by ethanol 2 (mouse)Not determined2144515861180896594Mouse
1302013Tbbmd3_mtotal body bone mineral density 3 (mouse)Not determined2145196949179197085Mouse
1300806Aod4_mautoimmune ovarian dysgenesis 4 (mouse)Not determined2145228719179228841Mouse
1301865Hdlq19_mHDL QTL 19 (mouse)Not determined2145518775179518926Mouse
12790983Bwq12_mbody weight QTL 12 (mouse)2148238204181755017Mouse
4142211Nilac3_mnicotine induced locomotor activity 3 (mouse)Not determined2148664893181755017Mouse
1558917Gct8_mgranulosa cell tumorigenesis 8 (mouse)Not determined2149236907181755017Mouse
1300751Bdt1_mbone density traits 1 (mouse)Not determined2149988902181755017Mouse
1301085Lrnx10_mlearning-contextual 10 (mouse)Not determined2150212221181755017Mouse
11038701Ltpr2e_mLeishmania tropica response 2e (mouse)2150212221181755017Mouse
4142450Lmr16_mleishmaniasis resistance 16 (mouse)Not determined2150212221181755017Mouse
1301019Bmd6_mbone mineral density 6 (mouse)Not determined2151778297181755017Mouse
14747002Mancz3_mmandible centroid size 3 (mouse)2152329820181755017Mouse
1300622Cfld1_mcystic fibrosis lung disease 1 (mouse)Not determined2155823920181755017Mouse
1357537Lith12_mlithogenic gene 12 (mouse)Not determined2156196464181755017Mouse
1300688Nidd2k_mNidd2 on KK-A (mouse)Not determined2158078337178442452Mouse
1302003Sluc17_msusceptibility to lung cancer 17 (mouse)Not determined2162433493181755017Mouse
1558991Tailq4_mtail length QTL 4 (mouse)Not determined2162736926178442452Mouse
1357435Epfq2_mepididymal fat pad weight QTL 2 (mouse)Not determined2162736926178442452Mouse
1301677Alcp6_malcohol preference locus 6 (mouse)Not determined2163486407181755017Mouse
1301348Alcp5_malcohol preference locus 5 (mouse)Not determined2163486407181755017Mouse
1300676Prdt2_mprion disease incubation time 2 (mouse)Not determined2164515154181755017Mouse
12738409Lfibq1_mliver fibrosis QTL 1 (mouse)2167716420179207088Mouse
12910811Pwbwq3_mpre-weaning body weight QTL 3 (mouse)2169794802178920791Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001305132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001305133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_130970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK008984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082611 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB610151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX005149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX890623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000099007   ⟹   ENSMUSP00000096605
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,605,843 - 176,619,602 (-)Ensembl
GRCm38.p6 Ensembl2176,914,050 - 176,927,809 (-)Ensembl
RefSeq Acc Id: ENSMUST00000108931   ⟹   ENSMUSP00000104559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,608,562 - 176,609,311 (-)Ensembl
GRCm38.p6 Ensembl2176,916,769 - 176,917,518 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125090
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,607,450 - 176,619,598 (-)Ensembl
GRCm38.p6 Ensembl2176,915,657 - 176,927,805 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134982   ⟹   ENSMUSP00000115243
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,584,302 - 176,619,587 (-)Ensembl
GRCm38.p6 Ensembl2176,892,509 - 176,927,794 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135176
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2176,609,335 - 176,610,852 (-)Ensembl
GRCm38.p6 Ensembl2176,917,542 - 176,919,059 (-)Ensembl
RefSeq Acc Id: NM_001305132   ⟹   NP_001292061
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392176,605,835 - 176,619,606 (-)NCBI
GRCm382176,914,042 - 176,927,813 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001305133   ⟹   NP_001292062
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392176,605,835 - 176,619,606 (-)NCBI
GRCm382176,914,042 - 176,927,813 (-)NCBI
Sequence:
RefSeq Acc Id: NR_130970
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392176,584,302 - 176,619,606 (-)NCBI
GRCm382176,892,509 - 176,927,813 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001292061   ⟸   NM_001305132
- Peptide Label: isoform 1
- UniProtKB: A2ARL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001292062   ⟸   NM_001305133
- Peptide Label: isoform 2
- UniProtKB: D3YYR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000096605   ⟸   ENSMUST00000099007
RefSeq Acc Id: ENSMUSP00000115243   ⟸   ENSMUST00000134982
RefSeq Acc Id: ENSMUSP00000104559   ⟸   ENSMUST00000108931
Protein Domains
C2H2-type   KRAB

Promoters
RGD ID:6880034
Promoter ID:EPDNEW_M3445
Type:initiation region
Name:Gm14296_1
Description:Mus musculus predicted gene 14296 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382176,927,809 - 176,927,869EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3708667 AgrOrtholog
Ensembl Genes ENSMUSG00000074527 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000078894 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000099007 ENTREZGENE
  ENSMUST00000099007.3 UniProtKB/TrEMBL
  ENSMUST00000099009.9 UniProtKB/TrEMBL
  ENSMUST00000108931.3 UniProtKB/TrEMBL
  ENSMUST00000134982 ENTREZGENE
  ENSMUST00000134982.8 UniProtKB/TrEMBL
  ENSMUST00000136719.2 UniProtKB/TrEMBL
  ENSMUST00000166464.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel-associated_box UniProtKB/TrEMBL
  ZNF781 UniProtKB/TrEMBL
  Znf_C2H2/integrase_DNA-bd UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
KEGG Report mmu:100504263 UniProtKB/TrEMBL
  mmu:102639598 UniProtKB/TrEMBL
MGD MGI:3708667 ENTREZGENE
NCBI Gene Gm14296 ENTREZGENE
PANTHER PTHR14947 UniProtKB/TrEMBL
  RIKEN CDNA 3300002I08 GENE-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  RIKEN CDNA D130040H23 GENE UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Gm14296 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A2ARL4 ENTREZGENE, UniProtKB/TrEMBL
  D3YYR3 ENTREZGENE, UniProtKB/TrEMBL
  E9Q3Y3_MOUSE UniProtKB/TrEMBL
  F7ACM4_MOUSE UniProtKB/TrEMBL