Gm16070 (predicted gene 16070) - Rat Genome Database

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Gene: Gm16070 (predicted gene 16070) Mus musculus
Analyze
Symbol: Gm16070
Name: predicted gene 16070
RGD ID: 9591445
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39117,746,251 - 17,797,870 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl117,746,251 - 17,797,870 (-)EnsemblGRCm39 Ensembl
GRCm38117,676,027 - 17,727,646 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl117,676,027 - 17,727,646 (-)EnsemblGRCm38mm10GRCm38
Celera117,587,778 - 17,639,549 (-)NCBICelera
Cytogenetic Map1A3NCBI
cM Map15.32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm16070
2165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:226
Count of miRNA genes:195
Interacting mature miRNAs:209
Transcripts:ENSMUST00000127328, ENSMUST00000149914, ENSMUST00000155588
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412226Alpq4_malcohol preference QTL 4 (mouse)Not determined1122976684Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000127328
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl117,763,128 - 17,797,870 (-)Ensembl
GRCm38.p6 Ensembl117,692,904 - 17,727,646 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl117,795,208 - 17,797,479 (-)Ensembl
GRCm38.p6 Ensembl117,724,984 - 17,727,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155588
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl117,746,251 - 17,797,508 (-)Ensembl
GRCm38.p6 Ensembl117,676,027 - 17,727,284 (-)Ensembl
RefSeq Acc Id: NR_130314
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39117,746,251 - 17,797,870 (-)NCBI
GRCm38117,676,027 - 17,727,646 (-)NCBI
Celera117,587,778 - 17,639,549 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085125 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000155588 ENTREZGENE
MGD MGI:3801761 ENTREZGENE
NCBI Gene Gm16070 ENTREZGENE
PhenoGen Gm16070 PhenoGen
RNAcentral URS00007E33DB RNACentral