Gm15510 (predicted gene 15510) - Rat Genome Database

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Gene: Gm15510 (predicted gene 15510) Mus musculus
Analyze
Symbol: Gm15510
Name: predicted gene 15510
RGD ID: 9590986
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3975,049,946 - 5,060,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl75,049,948 - 5,060,115 (-)EnsemblGRCm39 Ensembl
GRCm3875,046,947 - 5,057,116 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl75,046,949 - 5,057,116 (-)EnsemblGRCm38mm10GRCm38
Celera74,790,042 - 4,793,503 (-)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:18799693  


Genomics

Variants

.
Variants in Gm15510
203 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:87
Interacting mature miRNAs:89
Transcripts:ENSMUST00000123644, ENSMUST00000145534
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301177Vent3_mventricular size 3 (mouse)Not determined7120511925Mouse
10054067Sle20_msystematic lupus erythematosus susceptibility 20 (mouse)Not determined7120511925Mouse
1302188Lxw6_mlupus BXSB x NZW 6 (mouse)Not determined7121698146Mouse
12904941Edlmmq6_mextensor digitorum longus muscle mass QTL 6 (mouse)7121821047Mouse
12904948Tammq5_mtibialis anterior muscle mass QTL 5 (mouse)7121821047Mouse
12904953Gmmq5_mgastrocnemius muscle mass QTL 5 (mouse)7121821047Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1302115Abhr3_mallergen-induced bronchial hyperresponsiveness 3 (mouse)Not determined7331599616637423Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25394570Skmw58_mskeletal muscle weight 58, TA (mouse)735524286281481Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
25394569Skmw57_mskeletal muscle weight 57, gastroc (mouse)7458046916687861Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000123644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,049,948 - 5,060,115 (-)Ensembl
GRCm38.p6 Ensembl75,046,949 - 5,057,116 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl75,053,730 - 5,060,025 (-)Ensembl
GRCm38.p6 Ensembl75,050,731 - 5,057,026 (-)Ensembl
RefSeq Acc Id: NR_166619
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3975,049,946 - 5,060,115 (-)NCBI
GRCm3875,046,947 - 5,057,116 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000086604 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000123644 ENTREZGENE
MGD MGI:3782958 ENTREZGENE
NCBI Gene Gm15510 ENTREZGENE
PhenoGen Gm15510 PhenoGen
RNAcentral URS0001981389 RNACentral