Btbd6 (BTB domain containing 6) - Rat Genome Database

Name: Btbd6
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Btbd6 (BTB domain containing 6) Chinchilla lanigera

Analyze

Symbol:

Btbd6

Name:

BTB domain containing 6

RGD ID:

9060620

Description:

ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BTB (POZ) domain containing 6; BTB/POZ domain-containing protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BTBD6 (BTB domain containing 6)	NCBI	Ortholog
Mus musculus (house mouse):	Btbd6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Btbd6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BTBD6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	BTBD6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Btbd6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BTBD6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BTBD6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Btbd6 (BTB domain containing 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	3,494,946 - 3,500,783 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	3,494,950 - 3,496,888 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease axonal type 2O (ISO)

focal segmental glomerulosclerosis 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Btbd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	3,494,946 - 3,500,783 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955538	3,494,950 - 3,496,888 (+)	NCBI	ChiLan1.0	ChiLan1.0

BTBD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	105,248,533 - 105,251,093 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	105,248,533 - 105,251,093 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	105,714,870 - 105,717,430 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	104,786,053 - 104,788,474 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	104,786,052 - 104,788,475	NCBI
Celera	14	85,764,120 - 85,766,668 (+)	NCBI		Celera
Cytogenetic Map	14	q32.33	NCBI
HuRef	14	85,905,116 - 85,914,632 (+)	NCBI		HuRef
CHM1_1	14	105,644,856 - 105,647,407 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	99,495,394 - 99,497,954 (+)	NCBI		T2T-CHM13v2.0

Btbd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	112,937,880 - 112,943,113 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	112,940,102 - 112,942,565 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	112,974,260 - 112,979,493 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	112,976,482 - 112,978,945 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	114,214,693 - 114,217,151 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	113,424,371 - 113,426,748 (+)	NCBI		MGSCv36	mm8
Celera	12	114,186,511 - 114,188,971 (+)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	61.5	NCBI

Btbd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	137,879,202 - 137,881,662 (+)	NCBI		GRCr8
mRatBN7.2	6	132,058,094 - 132,060,603 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	132,058,096 - 132,060,587 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	132,227,690 - 132,230,150 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	132,517,505 - 132,519,965 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	131,892,617 - 131,895,077 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	137,785,662 - 137,788,442 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	137,785,982 - 137,788,434 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	146,782,104 - 146,784,624 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	137,983,974 - 137,986,434 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	129,596,008 - 129,598,468 (+)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

BTBD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	106,420,635 - 106,423,180 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	105,637,137 - 105,639,682 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	85,883,988 - 85,886,491 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	105,665,258 - 105,667,031 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

BTBD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	72,605,715 - 72,607,189 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	72,605,516 - 72,607,023 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	72,116,307 - 72,118,424 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	72,892,008 - 72,894,130 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	72,891,341 - 72,893,965 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	72,572,640 - 72,574,760 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	72,623,608 - 72,625,718 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	73,013,585 - 73,015,722 (+)	NCBI		UU_Cfam_GSD_1.0

Btbd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	1,467,750 - 1,475,220 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936621	300,503 - 304,183 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936621	301,879 - 304,177 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BTBD6
(Sus scrofa - pig)

No map positions available.

BTBD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	83,147,794 - 83,150,199 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666053	70,592,041 - 70,594,592 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Btbd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	255,564 - 257,375 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	255,182 - 257,494 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005410859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01071166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBBH01033922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01001883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000018601 ⟹ ENSCLAP00000018420

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955538	3,494,946 - 3,500,783 (+)	Ensembl

RefSeq Acc Id:

XM_005410859 ⟹ XP_005410916

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955538	3,494,950 - 3,496,888 (+)	NCBI

Sequence:

show sequence

CGCGGGGCAGGTACGCGCGCTCGCAGCTCGCTCGTGGAGCTCGGCGCCGGCGAGAACGGGCTCC
GGCGAGGCGGAGAGCGCGCCGGGCGGGGCGGGGCAAGCGACCGCCCGGACGACAACCGGCGTCG
GCGCGTGGCGGGGCGGAAGAGTTCTGCTTTCGGTCCGCGCCTTCGAAGACTGACCGCTGCCGCT
CGAGGGTCTCCCCGGAGCCTCCCCGCCTCCGCGCGCGGCCCCGCGCCAAGCTCGCCGGCCCCAG
CCAGCGTGGGCCCGGAGCCGAGCGCCCGCCCCGCGCCCCGCGCCGCGCCCCCGAGGGTCCGCAT
GGCCACGCGGGTGCTGAGCATGAGCGCGCGCCTGGGCCCCGCGCCGCCGCCGCCCGCCGCGCAG
GACGAGCCCGTGTTCGCGCAGCTCAAGCCCGTGCTGGGCGCCGCGAACCCGGCCCGCGACGCGG
CGCTCTTCCCCGCCGAGGAGCTGAAGCACCCGCACCACCACGCGCCCGCGCCGCCCGCGCCCGC
GCCGCCCGCTCCCGACAACAACAACTCCGAGAGCCCGCACTGGCAGGCCTTCCACCCCACACTG
CGCGAGCGGAACGCGCTCATGTTCAACAACGAGCTCATGGCCGACGTCCACTTCGTCGTGGGGC
CCCCGGGGGCGGCCCGGCGGGTGCCAGCCCACAAGTACGTGCTGGCCGTCGGCAGCTCGGTCTT
CTACGCGATGTTCTACGGGGACCTTGCGGAAGTCAAGTCAGAAATCCACATTCCAGACGTGGAG
CCTGCCGCATTCCTGGTCTTGCTAAAGTACATGTACAGTGATGAGATCGATCTTGAGGCTGACA
CGGTGCTGGCCACCCTGTATGCTGCCAAGAAGTACATTGTACCAGCCTTGGCAAAAGCCTGCGT
CAACTTTCTGGAGACAAGTCTGGAAGCCAAAAACGCCTGTGTGCTGTTGTCCCAGAGCCGGCTG
TTTGAGGAGCCTGAGCTGACGCAGCGCTGTTGGGAGGTCATTGATGCACAGGCCGAGATGGCCC
TGCGCTCTGAAGGCTTCTGTGAGATCGACCGACAGACACTGGAGATCATTGTGACTCGGGAGGC
CCTCAACACCAAGGAGGCGGTGGTCTTTGAAGCTGTCCTGAACTGGGCTGAGGCGGAGTGCAAA
AGGCAGGGCCTACCAATCACTCCACACAACAAGAGGCACGTTTTAGGACGAGCCCTCTATCTAG
TCCGAATTCCAACCATGACTCTGGAGGAGTTTGCCAATGGTGCTGCCCAGTCAGACATCCTAAC
ACTGGAGGAGACCCACAACATTTTCCTGTGGTACACTGCTGCCAACAAACCCCTCCTTGACTTT
CCCCTGACCAAGAGGAAAGGCCTTGCCCCTCAGAGGTGCCACCGGTTCCAGTCTTCTGCCTATC
GCAGCAACCAGTGGCGGTACCGTGGGCGCTGTGACAGCATCCAGTTTGCTGTAGACAGAAGGGT
GTTTATCGCTGGGCTGGGTCTGTATGGGTCCAGCTCTGGGAAGGCAGAGTATAGTGTGAAGATT
GAACTCAAGCGGCTGGGGATGGTCCTGGCTCAGAATCTGACCAAGTTTGTGTCAGATGGTTCCA
GTAATACCTTCCCAGTCTGGTTTGAGCATCCAGTCCAGGTTGAGCAGGATACCTTCTACACAGC
CAGTGCTGTGCTGGATGGCAGTGAGCTCAGCTACTTTGGGCAGGAGGGAATGACAGAAGTGCAG
TGTGGGAAAGTGGCCTTCCAGTTCCAGTGCTCCTCGGACAGCACCAACGGGACGGGGGTCCAGG
GTGGGCAGATCCCAGAGCTCATCTTCTATGCCTGAGGCTGAGGGGCCCTGGAGGGAACAACACC
TGGCCCTTTCTCTGCCAGAAGTCACTCAGGAAGTGCAGGGGAGGTGCAGGACACTGCTGACTGC
CTTACAGGCACCGTTAAAGGTTTCCCTACTTATATCAGCTTGAATCTGTGAACAGGCACCTTTT
CCACACAAAGCCTGGAGGCTGAGGCTTGGTGTTTCCTGTTTATCGGGCACATGCCCCGTGAGGT
TAACAGTTGGGACCCAACCCAGTCTCCAGATTCCTGCCCAGCGGCAACCACGCTTTGGGCACTT
GGATGTTCCTCTCAGCCTTTTGGATTCCAACTAGTTCCAAGCTTGCCTGGAGACCCTCCCTTCA
AATAAAGGTCACCGAAAAGTCACTTAAAATAGTTTACCTATTTAAGTGGATTTTCATAATAAAG
GTTTTGCAAAACAAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005410916	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018420
	ENSCLAP00000018420.1

RefSeq Acc Id:

XP_005410916 ⟸ XM_005410859

- UniProtKB:

A0A8C2VR81 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATRVLSMSARLGPAPPPPAAQDEPVFAQLKPVLGAANPARDAALFPAEELKHPHHHAPAPPAP
APPAPDNNNSESPHWQAFHPTLRERNALMFNNELMADVHFVVGPPGAARRVPAHKYVLAVGSSV
FYAMFYGDLAEVKSEIHIPDVEPAAFLVLLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKAC
VNFLETSLEAKNACVLLSQSRLFEEPELTQRCWEVIDAQAEMALRSEGFCEIDRQTLEIIVTRE
ALNTKEAVVFEAVLNWAEAECKRQGLPITPHNKRHVLGRALYLVRIPTMTLEEFANGAAQSDIL
TLEETHNIFLWYTAANKPLLDFPLTKRKGLAPQRCHRFQSSAYRSNQWRYRGRCDSIQFAVDRR
VFIAGLGLYGSSSGKAEYSVKIELKRLGMVLAQNLTKFVSDGSSNTFPVWFEHPVQVEQDTFYT
ASAVLDGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA

hide sequence

RefSeq Acc Id:

ENSCLAP00000018420 ⟸ ENSCLAT00000018601

Protein Domains

BTB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012630	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018601	ENTREZGENE
	ENSCLAT00000018601.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.420	UniProtKB/TrEMBL
	2.60.120.820	UniProtKB/TrEMBL
InterPro	BACK	UniProtKB/TrEMBL
	BTB/POZ_dom	UniProtKB/TrEMBL
	BTB_POZ_BTBD6	UniProtKB/TrEMBL
	PHR	UniProtKB/TrEMBL
	PHR_sf	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
NCBI Gene	Btbd6	ENTREZGENE
PANTHER	BTB/POZ DOMAIN-CONTAINING	UniProtKB/TrEMBL
	BTB/POZ DOMAIN-CONTAINING PROTEIN 6	UniProtKB/TrEMBL
Pfam	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
	PHR	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
SMART	BACK	UniProtKB/TrEMBL
	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/TrEMBL
UniProt	A0A8C2VR81	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Btbd6	BTB domain containing 6		BTB (POZ) domain containing 6	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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