BTBD6 (BTB domain containing 6) - Rat Genome Database

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Gene: BTBD6 (BTB domain containing 6) Sus scrofa
Analyze
Symbol: BTBD6
Name: BTB domain containing 6
RGD ID: 14109663
Description: INVOLVED IN neurogenesis (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease axonal type 2O (ortholog); focal segmental glomerulosclerosis 5 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BTB/POZ domain-containing protein 6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position: No map positions available.


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
neurogenesis  (IEA)

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
BTBD6
(Sus scrofa - pig)		 No map positions available.
BTBD6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814105,248,533 - 105,251,093 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14105,248,533 - 105,251,093 (+)EnsemblGRCh38hg38GRCh38
GRCh3714105,714,870 - 105,717,430 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614104,786,053 - 104,788,474 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414104,786,052 - 104,788,475NCBI
Celera1485,764,120 - 85,766,668 (+)NCBICelera
Cytogenetic Map14q32.33NCBI
HuRef1485,905,116 - 85,914,632 (+)NCBIHuRef
CHM1_114105,644,856 - 105,647,407 (+)NCBICHM1_1
T2T-CHM13v2.01499,495,394 - 99,497,954 (+)NCBIT2T-CHM13v2.0
Btbd6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912112,937,880 - 112,943,113 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12112,940,102 - 112,942,565 (+)EnsemblGRCm39 Ensembl
GRCm3812112,974,260 - 112,979,493 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12112,976,482 - 112,978,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712114,214,693 - 114,217,151 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612113,424,371 - 113,426,748 (+)NCBIMGSCv36mm8
Celera12114,186,511 - 114,188,971 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1261.5NCBI
Btbd6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86137,879,202 - 137,881,662 (+)NCBIGRCr8
mRatBN7.26132,058,094 - 132,060,603 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6132,058,096 - 132,060,587 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6132,227,690 - 132,230,150 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06132,517,505 - 132,519,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06131,892,617 - 131,895,077 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.06137,785,662 - 137,788,442 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6137,785,982 - 137,788,434 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06146,782,104 - 146,784,624 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46137,983,974 - 137,986,434 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6129,596,008 - 129,598,468 (+)NCBICelera
Cytogenetic Map6q32NCBI
Btbd6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555383,494,946 - 3,500,783 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555383,494,950 - 3,496,888 (+)NCBIChiLan1.0ChiLan1.0
BTBD6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215106,420,635 - 106,423,180 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114105,637,137 - 105,639,682 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01485,883,988 - 85,886,491 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114105,665,258 - 105,667,031 (+)NCBIpanpan1.1PanPan1.1panPan2
BTBD6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1872,605,715 - 72,607,189 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl872,605,516 - 72,607,023 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha872,116,307 - 72,118,424 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0872,892,008 - 72,894,130 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl872,891,341 - 72,893,965 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1872,572,640 - 72,574,760 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0872,623,608 - 72,625,718 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0873,013,585 - 73,015,722 (+)NCBIUU_Cfam_GSD_1.0
Btbd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086401,467,750 - 1,475,220 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936621300,503 - 304,183 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936621301,879 - 304,177 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12483,147,794 - 83,150,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605370,592,041 - 70,594,592 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624734255,564 - 257,375 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624734255,182 - 257,494 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2
Low 10 4 3 5 23 2 3 3
Below cutoff

Sequence


Protein Domains
BACK   BTB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00005032105 UniProtKB/TrEMBL
  ENSSSCG00025074309 UniProtKB/TrEMBL
  ENSSSCG00030058272 UniProtKB/TrEMBL
  ENSSSCG00035047422 UniProtKB/TrEMBL
  ENSSSCG00040038994 UniProtKB/TrEMBL
  ENSSSCG00045033942 UniProtKB/TrEMBL
  ENSSSCG00050068331 UniProtKB/TrEMBL
  ENSSSCG00055015194 UniProtKB/TrEMBL
  ENSSSCG00060036736 UniProtKB/TrEMBL
  ENSSSCG00065055947 UniProtKB/TrEMBL
  ENSSSCG00070013212 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00005051197.1 UniProtKB/TrEMBL
  ENSSSCT00025102369.1 UniProtKB/TrEMBL
  ENSSSCT00025102406.1 UniProtKB/TrEMBL
  ENSSSCT00030081309.1 UniProtKB/TrEMBL
  ENSSSCT00030081331.1 UniProtKB/TrEMBL
  ENSSSCT00035063134.1 UniProtKB/TrEMBL
  ENSSSCT00035063142.1 UniProtKB/TrEMBL
  ENSSSCT00040052181.1 UniProtKB/TrEMBL
  ENSSSCT00040052224.1 UniProtKB/TrEMBL
  ENSSSCT00045058076.1 UniProtKB/TrEMBL
  ENSSSCT00045058117.1 UniProtKB/TrEMBL
  ENSSSCT00050093250.1 UniProtKB/TrEMBL
  ENSSSCT00050093257.1 UniProtKB/TrEMBL
  ENSSSCT00055029990.1 UniProtKB/TrEMBL
  ENSSSCT00055030022.1 UniProtKB/TrEMBL
  ENSSSCT00060049770.1 UniProtKB/TrEMBL
  ENSSSCT00060049776.1 UniProtKB/TrEMBL
  ENSSSCT00065076614.1 UniProtKB/TrEMBL
  ENSSSCT00065076626.1 UniProtKB/TrEMBL
  ENSSSCT00065076629.1 UniProtKB/TrEMBL
  ENSSSCT00070025747.1 UniProtKB/TrEMBL
  ENSSSCT00070025783.1 UniProtKB/TrEMBL
  ENSSSCT00070025790.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.420 UniProtKB/TrEMBL
  2.60.120.820 UniProtKB/TrEMBL
InterPro BACK UniProtKB/TrEMBL
  BTB/POZ_dom UniProtKB/TrEMBL
  BTB_POZ_BTBD6 UniProtKB/TrEMBL
  PHR UniProtKB/TrEMBL
  PHR_sf UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
NCBI Gene BTBD6 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING UniProtKB/TrEMBL
  BTB/POZ DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
  PHR UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
SMART BACK UniProtKB/TrEMBL
  BTB UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
UniProt A0A4X1TVK6_PIG UniProtKB/TrEMBL
  A0A4X1TY35_PIG UniProtKB/TrEMBL
  A0A4X1U0H6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0JNW9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85907 ENTREZGENE