Gucy2f (guanylate cyclase 2F, retinal) - Rat Genome Database

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Gene: Gucy2f (guanylate cyclase 2F, retinal) Chinchilla lanigera
Analyze
Symbol: Gucy2f
Name: guanylate cyclase 2F, retinal
RGD ID: 9060098
Description: ENCODES a protein that exhibits guanylate cyclase activity (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cGMP-mediated signaling (ortholog); detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease type X (ortholog); retinal degeneration (ortholog); FOUND IN plasma membrane (ortholog); rod photoreceptor outer segment (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: retinal guanylyl cyclase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,331,247 - 6,437,563 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,331,247 - 6,437,563 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gucy2f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554906,331,247 - 6,437,563 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554906,331,247 - 6,437,563 (+)NCBIChiLan1.0ChiLan1.0
GUCY2F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X109,372,906 - 109,482,086 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX109,372,906 - 109,482,086 (-)EnsemblGRCh38hg38GRCh38
GRCh37X108,616,135 - 108,725,315 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X108,502,791 - 108,611,941 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X108,422,279 - 108,531,432NCBI
CeleraX109,095,739 - 109,204,892 (-)NCBICelera
Cytogenetic MapXq22.3-q23NCBI
HuRefX98,238,823 - 98,346,954 (-)NCBIHuRef
CHM1_1X108,527,410 - 108,636,553 (-)NCBICHM1_1
T2T-CHM13v2.0X107,820,404 - 107,929,552 (-)NCBIT2T-CHM13v2.0
Gucy2f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X140,862,282 - 140,980,399 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX140,864,156 - 140,979,927 (-)EnsemblGRCm39 Ensembl
GRCm38X142,079,286 - 142,197,276 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX142,081,160 - 142,196,931 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X138,515,703 - 138,631,474 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X137,327,528 - 137,443,299 (-)NCBIMGSCv36mm8
CeleraX126,078,100 - 126,191,808 (-)NCBICelera
Cytogenetic MapXF2NCBI
cM MapX62.85NCBI
Gucy2f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X110,507,183 - 110,605,017 (-)NCBIGRCr8
mRatBN7.2X105,710,356 - 105,808,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX105,710,356 - 105,808,183 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX107,848,258 - 107,946,084 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X111,347,446 - 111,445,266 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X108,912,156 - 109,010,662 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X113,372,240 - 113,474,210 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX113,372,240 - 113,474,164 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X111,822,417 - 111,920,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X36,367,528 - 36,469,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X36,420,996 - 36,522,581 (+)NCBI
CeleraX105,123,834 - 105,223,272 (-)NCBICelera
Cytogenetic MapXq33NCBI
GUCY2F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X108,864,549 - 108,973,618 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X108,868,153 - 108,977,222 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X98,481,609 - 98,590,680 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X108,952,200 - 109,061,441 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX108,952,200 - 109,061,441 (-)Ensemblpanpan1.1panPan2
GUCY2F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X82,648,673 - 82,751,394 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX82,649,601 - 82,751,394 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX68,727,019 - 68,829,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X84,298,609 - 84,401,821 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX84,299,418 - 84,401,821 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X81,778,827 - 81,877,294 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X83,469,984 - 83,573,170 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X83,301,901 - 83,400,620 (-)NCBIUU_Cfam_GSD_1.0
Gucy2f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X81,905,232 - 82,004,580 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364995,653,384 - 5,752,732 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GUCY2F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X89,557,952 - 89,653,491 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X105,222,491 - 105,268,453 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GUCY2F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X97,234,564 - 97,349,105 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX97,239,846 - 97,348,853 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606522,440,973 - 22,541,598 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gucy2f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248036,509,114 - 6,683,046 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248036,510,264 - 6,683,046 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000001969   ⟹   ENSCLAP00000001925
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554906,331,247 - 6,437,563 (+)Ensembl
RefSeq Acc Id: XM_013504522   ⟹   XP_013359976
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554906,331,247 - 6,437,563 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013359976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001925
  ENSCLAP00000001925.1
Reference Protein Sequences
RefSeq Acc Id: XP_013359976   ⟸   XM_013504522
- UniProtKB: A0A8C2UPL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001925   ⟸   ENSCLAT00000001969
Protein Domains
Guanylate cyclase   Protein kinase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001419 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001969 ENTREZGENE
  ENSCLAT00000001969.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.1230 UniProtKB/TrEMBL
  3.40.50.2300 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro A/G_cyclase UniProtKB/TrEMBL
  A/G_cyclase_CS UniProtKB/TrEMBL
  ANF_lig-bd_rcpt UniProtKB/TrEMBL
  HNOB_dom_associated UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  Nucleotide_cyclase UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Ser-Thr/Tyr_kinase_cat_dom UniProtKB/TrEMBL
NCBI Gene Gucy2f ENTREZGENE
PANTHER GUANYLYL CYCLASE UniProtKB/TrEMBL
  PTHR11920:SF349 UniProtKB/TrEMBL
Pfam ANF_receptor UniProtKB/TrEMBL
  Guanylate_cyc UniProtKB/TrEMBL
  HNOBA UniProtKB/TrEMBL
  PK_Tyr_Ser-Thr UniProtKB/TrEMBL
PROSITE GUANYLATE_CYCLASE_1 UniProtKB/TrEMBL
  GUANYLATE_CYCLASE_2 UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
SMART CYCc UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/TrEMBL
  SSF55073 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
UniProt A0A8C2UPL8 ENTREZGENE, UniProtKB/TrEMBL