Pcif1 (phosphorylated CTD interacting factor 1)

Gene: Pcif1 (phosphorylated CTD interacting factor 1) Chinchilla lanigera

Analyze

Symbol:

Pcif1

Name:

phosphorylated CTD interacting factor 1 (Ensembl:PDX1 C-terminal inhibiting factor 1)

RGD ID:

9053275

Description:

ENCODES a protein that exhibits mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity (ortholog); RNA polymerase II C-terminal domain binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of translation (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN intercellular bridge (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

PDX1 C-terminal inhibiting factor 1; phosphorylated CTD-interacting factor 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,355,227 - 11,368,392 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,355,227 - 11,368,392 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

focal epilepsy (ISO)

T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA processing (ISO)

negative regulation of translation (ISO)

positive regulation of translation (ISO)

regulation of translation (ISO)

Cellular Component

intercellular bridge (ISO)

microtubule cytoskeleton (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity (ISO)

RNA polymerase II C-terminal domain binding (ISO)

RNA polymerase II C-terminal domain phosphoserine binding (ISO)

S-adenosyl-L-methionine binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Pcif1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,355,227 - 11,368,392 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,355,227 - 11,368,392 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCIF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	45,934,683 - 45,948,020 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	45,934,683 - 45,948,023 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	44,563,322 - 44,576,659 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	43,996,724 - 44,010,069 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	43,996,723 - 44,010,067	NCBI
Celera	20	41,274,773 - 41,288,119 (+)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	41,304,981 - 41,318,131 (+)	NCBI		HuRef
CHM1_1	20	44,466,000 - 44,479,319 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	47,670,740 - 47,684,073 (+)	NCBI		T2T-CHM13v2.0

Pcif1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	164,721,288 - 164,733,360 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	164,721,224 - 164,736,374 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	164,879,368 - 164,891,440 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	164,879,304 - 164,894,454 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	164,704,868 - 164,716,937 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	164,570,573 - 164,582,642 (+)	NCBI		MGSCv36	mm8
Celera	2	170,816,601 - 170,828,684 (+)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	85.27	NCBI

Pcif1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	174,033,471 - 174,046,403 (+)	NCBI		GRCr8
mRatBN7.2	3	153,614,147 - 153,627,079 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	153,614,147 - 153,627,079 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	157,422,576 - 157,435,503 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	165,921,550 - 165,934,477 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	163,665,323 - 163,678,250 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	161,343,883 - 161,356,815 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,343,883 - 161,356,815 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,528,503 - 167,541,435 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	155,914,227 - 155,927,159 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	155,821,464 - 155,833,176 (+)	NCBI
Celera	3	152,219,717 - 152,232,649 (+)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

PCIF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	51,676,010 - 51,689,424 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	51,669,169 - 51,682,535 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	42,273,443 - 42,286,885 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	43,360,219 - 43,373,956 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	43,360,219 - 43,374,593 (+)	Ensembl	panpan1.1		panPan2

PCIF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	33,214,370 - 33,225,922 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	33,214,419 - 33,226,732 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	32,740,403 - 32,752,784 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	33,923,867 - 33,936,241 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	33,924,726 - 33,936,276 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	33,182,148 - 33,194,524 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	33,297,465 - 33,309,839 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	33,836,439 - 33,848,821 (+)	NCBI		UU_Cfam_GSD_1.0

Pcif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	191,636,744 - 191,645,564 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	7,091,140 - 7,103,124 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	7,090,367 - 7,103,124 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCIF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	48,120,599 - 48,132,620 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	48,120,263 - 48,132,003 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	53,760,285 - 53,771,889 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCIF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	17,938,156 - 17,953,289 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	17,938,423 - 17,948,425 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	66,573,899 - 66,586,931 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcif1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624790	8,647,317 - 8,660,080 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624790	8,647,292 - 8,660,138 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005392398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005392399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01039687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01051984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000012332 ⟹ ENSCLAP00000012190

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	11,355,227 - 11,368,392 (-)	Ensembl

RefSeq Acc Id:

XM_005392398 ⟹ XP_005392455

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	11,355,227 - 11,368,392 (-)	NCBI

Sequence:

show sequence

ATCCTTGCTCCCTTCTTCGCCCAAACAGATCCTCTGGCCCCTCTGGGTGTGCGCAAGGGGCAAA
CTGAAGCCGGGAGTGTCTGTGAAATTCTTTCCTTACTCCACACCTCACGGACAGCAAAGCTGTT
TCCCTCCCCTCTGAGCTGCACGGAACAGCAGGGAAAGACGGGGGAAAGGGGAGGGAACCGAAGG
CAAGGTTTGAAAAGCCGGCGGACTCTGCCACACTCAAGATGGCGGCGCAGCCGTGGCGAGGTCC
CTCAGAGGCGGTACCAGCGCATGCGCAGCGCGGAGTCCCGGGCCGGGACACAAGATGGCGGCAG
CGGCACTGGGGAGGGCGAGGCGGAGGCGGCAAAACGGGCGGTCGAGCAGAACGTGTAGCCGCAT
CCCCTCGAGTCCGCTCTGGGCAGCTGCTGATTCAAGAAGTCCTCTGGGCCCCTGTCTGCTCCAG
TGCTGACCAGCCCACTCACTTGTGCTGAGCCTTTCTGCAGGCTCCCCCTTGCCTCTGTTGGACC
CTGAAAAGTGGGAGTCAGTCCGGCTGGAGAAGAAAACCCTCTCATGCTAACCTTGCAGACCCCA
GAGGGTGAGAGAAAGGGAGTCTTCATTCAATCTTAAAATGTCCCTTGAGGGTGCTAAGATGGCC
AATGAGAATCATGGCAGTCCCCGGGAGGAAGCATCCTTGCTGAGTCACTCTCCAGGCACCTCCA
ATCAGAGCCAGCCCTGTTCTCCAAAGCCCGTCCGCCTGGTACAGGACCTCCCAGAGGAGCTTGT
GCACGCGGGCTGGGAGAAGTGCTGGAGCCGGAGGGAGAATCGTCCCTACTACTTCAACCGATTC
ACCAACCAGTCCCTGTGGGAGATGCCTGTGTTGGGCCAGCACGATGTGATTTCGGACCCTTTGG
GGTTGAACGCAACCCCACTGCCCCAAGACTCAAGCTTGGTGGAAACCCCCCCGGCTGAGAACAA
GGCCAGAAAGAGGCAGCTCTCGGAAGAGCAGCCAAGCGGCAATGGTGTGAAGAAGCCCAAGATT
GAAATCCCTGTGACATCCACAGGCCAGTCAGTGCCTAGTTCCCCCAGTATCCCAGGAACACCAA
CCCTGAAGATTTGGGGTGCATCCCCTGAAGATAAACAGCAAGCAGTTCTCCTCCGACCAACTGA
GGTGTACTGGGACCTGGACATCCAGACCAATGCTGTCATCAAGTACCGGGGCCCTTCGGAGGTA
CTGCCCCCTCATCCAGAAGTGGAGCTGCTCCGTTCCCAGCTCATCCTGAAGCTTCGACAGCACT
ACCGGGAGCTTTGCCAGCAGCGAGAAGGCATTGAGCCTCCTCGGGAATCCTTCAACCGCTGGAT
GCTAGAGCGCAAGGTGGTGGACAAAGGGTCTGACCCCTTGTTGCCTAGCAACTGTGAACCAGTC
GTGTCACCTTCCATGTTTCGTGAAATCATGAATGACATTCCCATCAGGTTATCCCGAATCAAGT
TCCGGGAAGAAGCCAAGCGCCTGCTTTTTAAGTACGCAGAGGCTGCCAGACGGCTCATCGAGTC
CAGGAGTGCTTCCCCCGATAGCAGGAAGGTGGTCAAGTGGAACGTGGAAGATACCTTCAGCTGG
CTCCGGAAGGACCACTCGGCCTCCAAGGAGGACTACATGGACCGCCTGGAGCACCTGCGGAGGC
AGTGTGGCCCTCATGTCTCTGCTGCAGCCAAGGACTCTGTGGAAGGCATCTGCAGTAAGATCTA
CCACATCTCCCTGGAGTATGTCAAACGCATCCGAGAGAAGCACCTGGCCATCCTCAAGGAGAAC
AACATTCCAGAGGAGGTGGAAGCCTCTGAGCTGGACCCCCGTCTGGTGTACTGCTACCCACTGC
GGCTGGCTGTGCCTGCACCCCCCATGCCCAACGTGGAGATGCATGTGGAGAATAACATGGTCTG
CATCCGGTACAAGGGAGAAATGGTCAAGGTCAGCCGCAACTACTTCAGCAAGCTGTGGCTCCTT
TATCGATACAGCTGCATTGATGACTCGATCTTTGAGAGGTTCCTGCCCCGGGTCTGGTGCCTTC
TCCGGCGGTACCAGATGATGTTTGGTGTGGGCCTCTATGAGGGGACTGGCCTTCAGGGATCGCT
GCCTGTGCACGTCTTTGAGGCCCTCCATCGACTCTTTGGCGTCAGCTTTGAGTGTTTCGCCTCA
CCTCTCAACTGCTACTTCCGCCAGTACTGTTCTGCCTTCCCTGACACAGATGGCTACTTTGGCT
CCCGCGGACCTTGCCTGGACTTTGCCCCACTGAGTGGTTCCTTTGAGGCCAACCCACCATTCTG
CGAGGAGCTCATGGATGCTATGGTCTCTCACTTTGAGAAACTGCTGGAGAGCTCATTGGAGCCC
CTGTCCTTCATTGTGTTCATCCCTGAGTGGCGGGAACCCCCCACACCAGCGCTCACCCGCATGG
AGCAGAGCCGCTTCAAACGCCACCAGCTGGTCTTGCCCGCCTTTGAGCATGAGTACCGCAGTGG
CTCCCAGCATGTCTGCAAGAAGGAGGAAATGCACTACAAGGCCGTCCACAACACAGCCGTGCTC
TTCCTACAGAATGACCCTGGCTTTGCCAAATGGGGGCCGACGCCTGAGCGGCTGCAAGAGTTAA
ACACCGCTTACCGGCAGTCAGGCCGCAGCCATGGCTCCAGCTCTTCCTCATCCTCCTCCTCAGA
AGCCAAGGACCGGGACTCTAACCGAGAGCAGGGCCCTAGCCGAGAGCCTCACCCAACTTAACAT
ACCCTGCGGGGAGGAGGAGCCCCGGGGGTGCTGGTATGGACTGCTGGGACTCGGGCTTCTGGAG
GCTGAATGAACTCCAGGACCCCTCCTGGGCTGGCAGCAGGACTTGGGCTGCCACTGACATAGGA
ATATTACGGCCCTGCCGGGGCTCCCCCTCCCTGCCCCTTTTCCCACACCCAACCTTAGACTCAC
TCTAAGTCCTTTGTAAATAGGCCCAATGCCTTCCCAACCCCATGCTGACCTTGTCGCCACCTTG
TTTCATTTGTAAAAGGAAATACATAAACCCCCTAAGAA

hide sequence

RefSeq Acc Id:

XM_005392399 ⟹ XP_005392456

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	11,355,227 - 11,368,391 (-)	NCBI

Sequence:

show sequence

TCCTTGCTCCCTTCTTCGCCCAAACAGATCCTCTGGCCCCTCTGGGTGTGCGCAAGGGGCAAAC
TGAAGCCGGGAGTGTCTGTGAAATTCTTTCCTTACTCCACACCTCACGGACAGCAAAGCTGTTT
CCCTCCCCTCTGAGCTGCACGGAACAGCAGGGAAAGACGGGGGAAAGGGGAGGGAACCGAAGGC
AAGGTTTGAAAAGCCGGCGGACTCTGCCACACTCAAGATGGCGGCGCAGCCGTGGCGAGGTCCC
TCAGAGGCGGTACCAGCGCATGCGCAGCGCGGAGTCCCGGGCCGGGACACAAGATGGCGGCAGC
GGCACTGGGGAGGGCGAGGCGGAGGCGGCAAAACGGGCGGTCGAGCAGAACGTGTAGCCGCATC
CCCTCGAGTCCGCTCTGGGCAGCTGCTGATTCAAGAAGTCCTCTGGGCCCCTGTCTGCTCCAGT
GCTGACCAGCCCACTCACTTGTGCTGAGCCTTTCTGCAGGCTCCCCCTTGCCTCTGTTGGACCC
TGAAAAGTGGGAGTCAGTCCGGCTGGAGAAGAAAACCCTCTCATGCTAACCTTGCAGACCCCAG
AGGGTCCCTTGAGGGTGCTAAGATGGCCAATGAGAATCATGGCAGTCCCCGGGAGGAAGCATCC
TTGCTGAGTCACTCTCCAGGCACCTCCAATCAGAGCCAGCCCTGTTCTCCAAAGCCCGTCCGCC
TGGTACAGGACCTCCCAGAGGAGCTTGTGCACGCGGGCTGGGAGAAGTGCTGGAGCCGGAGGGA
GAATCGTCCCTACTACTTCAACCGATTCACCAACCAGTCCCTGTGGGAGATGCCTGTGTTGGGC
CAGCACGATGTGATTTCGGACCCTTTGGGGTTGAACGCAACCCCACTGCCCCAAGACTCAAGCT
TGGTGGAAACCCCCCCGGCTGAGAACAAGGCCAGAAAGAGGCAGCTCTCGGAAGAGCAGCCAAG
CGGCAATGGTGTGAAGAAGCCCAAGATTGAAATCCCTGTGACATCCACAGGCCAGTCAGTGCCT
AGTTCCCCCAGTATCCCAGGAACACCAACCCTGAAGATTTGGGGTGCATCCCCTGAAGATAAAC
AGCAAGCAGTTCTCCTCCGACCAACTGAGGTGTACTGGGACCTGGACATCCAGACCAATGCTGT
CATCAAGTACCGGGGCCCTTCGGAGGTACTGCCCCCTCATCCAGAAGTGGAGCTGCTCCGTTCC
CAGCTCATCCTGAAGCTTCGACAGCACTACCGGGAGCTTTGCCAGCAGCGAGAAGGCATTGAGC
CTCCTCGGGAATCCTTCAACCGCTGGATGCTAGAGCGCAAGGTGGTGGACAAAGGGTCTGACCC
CTTGTTGCCTAGCAACTGTGAACCAGTCGTGTCACCTTCCATGTTTCGTGAAATCATGAATGAC
ATTCCCATCAGGTTATCCCGAATCAAGTTCCGGGAAGAAGCCAAGCGCCTGCTTTTTAAGTACG
CAGAGGCTGCCAGACGGCTCATCGAGTCCAGGAGTGCTTCCCCCGATAGCAGGAAGGTGGTCAA
GTGGAACGTGGAAGATACCTTCAGCTGGCTCCGGAAGGACCACTCGGCCTCCAAGGAGGACTAC
ATGGACCGCCTGGAGCACCTGCGGAGGCAGTGTGGCCCTCATGTCTCTGCTGCAGCCAAGGACT
CTGTGGAAGGCATCTGCAGTAAGATCTACCACATCTCCCTGGAGTATGTCAAACGCATCCGAGA
GAAGCACCTGGCCATCCTCAAGGAGAACAACATTCCAGAGGAGGTGGAAGCCTCTGAGCTGGAC
CCCCGTCTGGTGTACTGCTACCCACTGCGGCTGGCTGTGCCTGCACCCCCCATGCCCAACGTGG
AGATGCATGTGGAGAATAACATGGTCTGCATCCGGTACAAGGGAGAAATGGTCAAGGTCAGCCG
CAACTACTTCAGCAAGCTGTGGCTCCTTTATCGATACAGCTGCATTGATGACTCGATCTTTGAG
AGGTTCCTGCCCCGGGTCTGGTGCCTTCTCCGGCGGTACCAGATGATGTTTGGTGTGGGCCTCT
ATGAGGGGACTGGCCTTCAGGGATCGCTGCCTGTGCACGTCTTTGAGGCCCTCCATCGACTCTT
TGGCGTCAGCTTTGAGTGTTTCGCCTCACCTCTCAACTGCTACTTCCGCCAGTACTGTTCTGCC
TTCCCTGACACAGATGGCTACTTTGGCTCCCGCGGACCTTGCCTGGACTTTGCCCCACTGAGTG
GTTCCTTTGAGGCCAACCCACCATTCTGCGAGGAGCTCATGGATGCTATGGTCTCTCACTTTGA
GAAACTGCTGGAGAGCTCATTGGAGCCCCTGTCCTTCATTGTGTTCATCCCTGAGTGGCGGGAA
CCCCCCACACCAGCGCTCACCCGCATGGAGCAGAGCCGCTTCAAACGCCACCAGCTGGTCTTGC
CCGCCTTTGAGCATGAGTACCGCAGTGGCTCCCAGCATGTCTGCAAGAAGGAGGAAATGCACTA
CAAGGCCGTCCACAACACAGCCGTGCTCTTCCTACAGAATGACCCTGGCTTTGCCAAATGGGGG
CCGACGCCTGAGCGGCTGCAAGAGTTAAACACCGCTTACCGGCAGTCAGGCCGCAGCCATGGCT
CCAGCTCTTCCTCATCCTCCTCCTCAGAAGCCAAGGACCGGGACTCTAACCGAGAGCAGGGCCC
TAGCCGAGAGCCTCACCCAACTTAACATACCCTGCGGGGAGGAGGAGCCCCGGGGGTGCTGGTA
TGGACTGCTGGGACTCGGGCTTCTGGAGGCTGAATGAACTCCAGGACCCCTCCTGGGCTGGCAG
CAGGACTTGGGCTGCCACTGACATAGGAATATTACGGCCCTGCCGGGGCTCCCCCTCCCTGCCC
CTTTTCCCACACCCAACCTTAGACTCACTCTAAGTCCTTTGTAAATAGGCCCAATGCCTTCCCA
ACCCCATGCTGACCTTGTCGCCACCTTGTTTCATTTGTAAAAGGAAATACATAAACCCCCTAAG
AA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005392455	(Get FASTA)	NCBI Sequence Viewer
	XP_005392456	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000012190
	ENSCLAP00000012190.1

RefSeq Acc Id:	XP_005392456 ⟸ XM_005392399
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2V9E7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANENHGSPREEASLLSHSPGTSNQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRENRPYYFN RFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKARKRQLSEEQPSGNGVKKP KIEIPVTSTGQSVPSSPSIPGTPTLKIWGASPEDKQQAVLLRPTEVYWDLDIQTNAVIKYRGPS EVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDPLLPSNCE PVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVKWNVEDTF SWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIREKHLAILK ENNIPEEVEASELDPRLVYCYPLRLAVPAPPMPNVEMHVENNMVCIRYKGEMVKVSRNYFSKLW LLYRYSCIDDSIFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLFGVSFECF ASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFEKLLESSL EPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHYKAVHNTA VLFLQNDPGFAKWGPTPERLQELNTAYRQSGRSHGSSSSSSSSSEAKDRDSNREQGPSREPHPT hide sequence

RefSeq Acc Id:

XP_005392455 ⟸ XM_005392398

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSLEGAKMANENHGSPREEASLLSHSPGTSNQSQPCSPKPVRLVQDLPEELVHAGWEKCWSRRE
NRPYYFNRFTNQSLWEMPVLGQHDVISDPLGLNATPLPQDSSLVETPPAENKARKRQLSEEQPS
GNGVKKPKIEIPVTSTGQSVPSSPSIPGTPTLKIWGASPEDKQQAVLLRPTEVYWDLDIQTNAV
IKYRGPSEVLPPHPEVELLRSQLILKLRQHYRELCQQREGIEPPRESFNRWMLERKVVDKGSDP
LLPSNCEPVVSPSMFREIMNDIPIRLSRIKFREEAKRLLFKYAEAARRLIESRSASPDSRKVVK
WNVEDTFSWLRKDHSASKEDYMDRLEHLRRQCGPHVSAAAKDSVEGICSKIYHISLEYVKRIRE
KHLAILKENNIPEEVEASELDPRLVYCYPLRLAVPAPPMPNVEMHVENNMVCIRYKGEMVKVSR
NYFSKLWLLYRYSCIDDSIFERFLPRVWCLLRRYQMMFGVGLYEGTGLQGSLPVHVFEALHRLF
GVSFECFASPLNCYFRQYCSAFPDTDGYFGSRGPCLDFAPLSGSFEANPPFCEELMDAMVSHFE
KLLESSLEPLSFIVFIPEWREPPTPALTRMEQSRFKRHQLVLPAFEHEYRSGSQHVCKKEEMHY
KAVHNTAVLFLQNDPGFAKWGPTPERLQELNTAYRQSGRSHGSSSSSSSSSEAKDRDSNREQGP
SREPHPT

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RefSeq Acc Id:

ENSCLAP00000012190 ⟸ ENSCLAT00000012332

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008405	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000012332	ENTREZGENE
	ENSCLAT00000012332.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1270.10	UniProtKB/TrEMBL
	2.20.70.10	UniProtKB/TrEMBL
InterPro	HSP70_C_sf	UniProtKB/TrEMBL
	PCIF1-like	UniProtKB/TrEMBL
	PCIF1_WW	UniProtKB/TrEMBL
	WW_dom	UniProtKB/TrEMBL
	WW_dom_sf	UniProtKB/TrEMBL
NCBI Gene	Pcif1	ENTREZGENE
PANTHER	MRNA (2'-O-METHYLADENOSINE-N(6)-)-METHYLTRANSFERASE	UniProtKB/TrEMBL
	PTHR21727	UniProtKB/TrEMBL
Pfam	PCIF1_WW	UniProtKB/TrEMBL
	PF00397	UniProtKB/TrEMBL
PROSITE	WW_DOMAIN_2	UniProtKB/TrEMBL
SMART	SM00456	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51045	UniProtKB/TrEMBL
UniProt	A0A8C2V9E7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2020-09-01	Pcif1	phosphorylated CTD interacting factor 1	Pcif1	PDX1 C-terminal inhibiting factor 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar