Pus7l (pseudouridine synthase 7 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Pus7l (pseudouridine synthase 7 like) Chinchilla lanigera
Analyze
Symbol: Pus7l
Name: pseudouridine synthase 7 like
RGD ID: 9040917
Description: ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: pseudouridylate synthase 7 homolog (S. cerevisiae)-like; pseudouridylate synthase 7 like; pseudouridylate synthase 7-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555002,989,764 - 3,010,129 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555002,992,767 - 3,010,129 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Pus7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555002,989,764 - 3,010,129 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555002,992,767 - 3,010,129 (-)NCBIChiLan1.0ChiLan1.0
PUS7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381243,718,992 - 43,758,790 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1243,718,992 - 43,758,793 (-)EnsemblGRCh38hg38GRCh38
GRCh371244,112,795 - 44,152,593 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361242,408,677 - 42,438,863 (-)NCBINCBI36Build 36hg18NCBI36
Celera1242,924,817 - 42,954,984 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1241,149,655 - 41,179,837 (-)NCBIHuRef
CHM1_11244,087,399 - 44,117,606 (-)NCBICHM1_1
T2T-CHM13v2.01243,677,351 - 43,717,488 (-)NCBIT2T-CHM13v2.0
Pus7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391594,420,521 - 94,441,397 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1594,420,569 - 94,441,428 (-)EnsemblGRCm39 Ensembl
GRCm381594,522,640 - 94,543,534 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1594,522,688 - 94,543,547 (-)EnsemblGRCm38mm10GRCm38
MGSCv371594,353,071 - 94,373,938 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361594,350,820 - 94,371,670 (-)NCBIMGSCv36mm8
Celera1596,666,812 - 96,687,694 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1548.52NCBI
Pus7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87127,538,785 - 127,561,936 (-)NCBIGRCr8
mRatBN7.27125,659,507 - 125,706,582 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7125,659,507 - 125,682,333 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.07135,765,307 - 135,803,818 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7135,765,303 - 135,800,481 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07135,423,778 - 135,461,175 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47133,032,032 - 133,051,933 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17133,109,101 - 133,129,308 (-)NCBI
Celera7122,049,753 - 122,072,371 (-)NCBICelera
Cytogenetic Map7q35NCBI
PUS7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21050,414,606 - 50,452,253 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11250,411,365 - 50,441,997 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01244,972,561 - 45,012,881 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11245,841,619 - 45,872,323 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1245,841,678 - 45,872,317 (+)Ensemblpanpan1.1panPan2
PUS7L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12710,341,082 - 10,368,797 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2710,340,681 - 10,384,002 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2735,937,844 - 35,967,153 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02710,530,323 - 10,558,639 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2710,530,312 - 10,579,822 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12710,341,917 - 10,371,219 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02710,376,122 - 10,405,023 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02736,179,740 - 36,208,636 (-)NCBIUU_Cfam_GSD_1.0
Pus7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494570,916,758 - 70,947,191 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365122,218,013 - 2,248,060 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365122,217,581 - 2,248,079 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PUS7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl574,806,152 - 74,834,428 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1574,805,634 - 74,835,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2577,617,826 - 77,647,226 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PUS7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11139,937,717 - 39,967,681 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1139,936,797 - 39,964,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037206,545,635 - 206,576,547 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pus7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248168,808,137 - 8,834,618 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003443   ⟹   ENSCLAP00000003375
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555002,989,764 - 3,010,129 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000003444   ⟹   ENSCLAP00000003376
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555002,989,764 - 3,010,129 (-)Ensembl
RefSeq Acc Id: XM_005406586   ⟹   XP_005406643
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555002,992,767 - 3,010,129 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005406643 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000003375
  ENSCLAP00000003375.1
  ENSCLAP00000003376.1
Reference Protein Sequences
RefSeq Acc Id: XP_005406643   ⟸   XM_005406586
- UniProtKB: A0A8C2URT7 (UniProtKB/TrEMBL),   A0A8C2UU73 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000003375   ⟸   ENSCLAT00000003443
RefSeq Acc Id: ENSCLAP00000003376   ⟸   ENSCLAT00000003444
Protein Domains
TRUD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002416 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000003443 ENTREZGENE
  ENSCLAT00000003443.1 UniProtKB/TrEMBL
  ENSCLAT00000003444.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.2350.20 UniProtKB/TrEMBL
InterPro PsdUridine_synth_cat_dom_sf UniProtKB/TrEMBL
  PsdUridine_synth_TruD UniProtKB/TrEMBL
  PsdUridine_synth_TruD_insert UniProtKB/TrEMBL
  TruD_catalytic UniProtKB/TrEMBL
NCBI Gene Pus7l ENTREZGENE
PANTHER PSEUDOURIDYLATE SYNTHASE PUS7L UniProtKB/TrEMBL
  PTHR13326 UniProtKB/TrEMBL
Pfam TruD UniProtKB/TrEMBL
PIRSF Pseudouridin_synth_euk_prd UniProtKB/TrEMBL
PROSITE TRUD UniProtKB/TrEMBL
Superfamily-SCOP SSF55120 UniProtKB/TrEMBL
UniProt A0A8C2URT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UU73 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-09-18 Pus7l  pseudouridine synthase 7 like    pseudouridylate synthase 7 like  Symbol and/or name change 5135510 APPROVED
2016-08-03 Pus7l  pseudouridylate synthase 7 like    pseudouridylate synthase 7-like  Symbol and/or name change 5135510 APPROVED
2015-08-25 Pus7l  pseudouridylate synthase 7-like    pseudouridylate synthase 7 homolog (S. cerevisiae)-like  Symbol and/or name change 5135510 APPROVED