Pus7l (pseudouridine synthase 7 like)

Gene: Pus7l (pseudouridine synthase 7 like) Ictidomys tridecemlineatus

Analyze

Symbol:

Pus7l

Name:

pseudouridine synthase 7 like

RGD ID:

12441802

Description:

ENCODES a protein that exhibits isomerase activity (inferred); pseudouridine synthase activity (inferred); RNA binding (inferred); INVOLVED IN mRNA pseudouridine synthesis (inferred); pseudouridine synthesis (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

pseudouridylate synthase 7 homolog (S. cerevisiae)-like; pseudouridylate synthase 7 like; pseudouridylate synthase 7 like, transcript variant X1; pseudouridylate synthase 7 like, transcript variant X2; pseudouridylate synthase 7 like, transcript variant X3; pseudouridylate synthase 7 like, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	70,916,758 - 70,947,191 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	2,218,013 - 2,248,060 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	2,217,581 - 2,248,079 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA pseudouridine synthesis (IEA)

pseudouridine synthesis (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

isomerase activity (IEA)

protein binding (ISO)

pseudouridine synthase activity (IEA)

RNA binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Pus7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	70,916,758 - 70,947,191 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936512	2,218,013 - 2,248,060 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936512	2,217,581 - 2,248,079 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PUS7L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	43,718,992 - 43,758,790 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	43,718,992 - 43,758,793 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	44,112,795 - 44,152,593 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	42,408,677 - 42,438,863 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	42,924,817 - 42,954,984 (-)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI
HuRef	12	41,149,655 - 41,179,837 (-)	NCBI		HuRef
CHM1_1	12	44,087,399 - 44,117,606 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	43,677,351 - 43,717,488 (-)	NCBI		T2T-CHM13v2.0

Pus7l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	94,420,521 - 94,441,397 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	94,420,569 - 94,441,428 (-)	Ensembl		GRCm39 Ensembl
GRCm38	15	94,522,640 - 94,543,534 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	94,522,688 - 94,543,547 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	94,353,071 - 94,373,938 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	94,350,820 - 94,371,670 (-)	NCBI		MGSCv36	mm8
Celera	15	96,666,812 - 96,687,694 (-)	NCBI		Celera
Cytogenetic Map	15	E3	NCBI
cM Map	15	48.52	NCBI

Pus7l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	127,538,785 - 127,561,936 (-)	NCBI		GRCr8
mRatBN7.2	7	125,659,507 - 125,706,582 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	125,659,507 - 125,682,333 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	7	135,765,307 - 135,803,818 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	135,765,303 - 135,800,481 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	7	135,423,778 - 135,461,175 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	7	133,032,032 - 133,051,933 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	7	133,109,101 - 133,129,308 (-)	NCBI
Celera	7	122,049,753 - 122,072,371 (-)	NCBI		Celera
Cytogenetic Map	7	q35	NCBI

Pus7l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955500	2,989,764 - 3,010,129 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955500	2,992,767 - 3,010,129 (-)	NCBI	ChiLan1.0	ChiLan1.0

PUS7L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	50,414,606 - 50,452,253 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	50,411,365 - 50,441,997 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	44,972,561 - 45,012,881 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	45,841,619 - 45,872,323 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	45,841,678 - 45,872,317 (+)	Ensembl	panpan1.1		panPan2

PUS7L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	10,341,082 - 10,368,797 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	10,340,681 - 10,384,002 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	35,937,844 - 35,967,153 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	10,530,323 - 10,558,639 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	10,530,312 - 10,579,822 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	10,341,917 - 10,371,219 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	10,376,122 - 10,405,023 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	36,179,740 - 36,208,636 (-)	NCBI		UU_Cfam_GSD_1.0

PUS7L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	74,806,152 - 74,834,428 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	74,805,634 - 74,835,135 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	77,617,826 - 77,647,226 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PUS7L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	39,937,717 - 39,967,681 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	39,936,797 - 39,964,155 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	206,545,635 - 206,576,547 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pus7l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624816	8,808,137 - 8,834,618 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005324849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021726108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280782	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040280783	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000006447 ⟹ ENSSTOP00000005763

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936512	2,218,013 - 2,248,060 (-)	Ensembl

RefSeq Acc Id:

XM_005324849 ⟹ XP_005324906

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	70,916,847 - 70,947,191 (+)	NCBI
SpeTri2.0	NW_004936512	2,217,986 - 2,248,079 (-)	NCBI

Sequence:

show sequence

CTCTAGGACTGGAGAAACTCTTGCAAAGGTCGATTCTTTAAGTGTGAGCCTGTCCCTTTAAATA
TGCCTCCGTCGGAGGCTGAAAAATCAAAAGCTTCCGGACATGCGCAGAACGTGCAGAGGAACGC
CTTCTTCTGGATTTAACACCGGTGCGAGATTTTGGCGCCACGTGTGGATCATATATATGTTCAA
GATCAGTTCGGGATTGAGGAGTCCTACTTTTTATCCTCAAGAGAAGGGCATTATTATTGAAGAA
TGGAAGAAGATACACATTATAGAATCAGGTTTAGTTCTTTGTGTTTCATCAATGAACATGTTGG
ATTTCAGGGTACTATAAAAAGCTCACCTGGTGACTTTATTGTTATTGAGATCGATGAACAAGGA
CAGTTAGTTAATAAAGCCATTGATGAACCAATTAATGCAGTTAGTAAAATACCTGAGCTGAATA
ATTTTGCCAAAAAGCCAAAATTAGATCTTCAAAATTTGTCCTTTGAAGATGGAAGTTACCAAGA
ACTTAATACTTTGTCTAAGTGCTCTGATGGTGACCAAAATCACCAGTCTAATTCAGAAAAAGAA
GATACCATCAGTGATAGGACTTCCAAGTGTGAAGAAGAAAAAGCTGATGTATTAAACTTCTTTT
TAGATGAAAAAACAAATGAATTACTGAATCAGTTTGCCTGTGATGTAAAAGAGAAATGGAATTC
AGAAACTGAGCTAATTGGGCCATCTCCTGAATTCTCATTAGGCAGGATTCTTGACAAAAACCAA
AGGGCTATTTTACACAGTGCTATTAGGCAGAAATTTCCTTTCTTAATAACTGTAGGAAAAAACA
GTGAAATTGTTATAAAACCAAATCTTGAATATAAAGAACTTTGCCATTTGGTATCTGAAGAAGA
AGCACTTGACTTTTTTAAGTATTTGGATGCAAAGAAAGAAAATTCCAAATTTACCTTTAAGCCT
GATGCAAACAAAGACCACAGAAAAGCTGTCCACCATTTTGTCAATAAGAAGTTTGGAAACCTTG
TGGAGACCAAATCTTTTCCTGAACAGACTTACAGTGCTGGTGATCCAAATGTAGTAATAACAGT
AAGATTTCGGGAAAAAACAAAGCACAAGAAAAGGTCTCTTCTTGAATGCCAGGAAAGAAAAGTG
ATATATACAGCTTTTACCCTACGAAAGGAAAATCTGGAGATGTTTGAAGCAATTGGTTTTTTAG
CTCTCAAACTTGGTGTGATTCCTTCGGATTTTACTTATGCAGGCCTTAAAGACAAGAAAGCCAT
CACCTATCAAGCAATGGTTGTGAGAAAAGTGACTCCAGAGAGGTTGAAAAATATTGAAAAAGAA
ATTGAAAAGAAAAGAATGAATGTGTTTAATATTCGATCTGTTGGTAAGCCCCTTAGACTTGGAC
AGCTCAAAGGAAATCACTTTAATATTGTCGTCAGAAATTTACAAAATCAAATAAATGATTCTGC
AAATTTGAAAGAGAGAATTTTTGAGGCGATAGAAAATGTTAAGAATAAAGGTTTTGTGAATTAC
TATGGACCACAGAGATTTGGGAAGGGAAGGAAAGTTCATACAGACCAAATTGGATTGGCTTTGC
TGAAGAATGAAATGGTGAAGGCCATAAAATTATTTCTTACACCAGAAGACTTGGATGATCCTGT
AAATAGAGCAAAGAAATATTTTCTTCAAACTGAGGATGCTAAAGGCACACTTTCATTGATGCCT
GAATTCAAAGTTCGAGAGAGAGCGTTGTTGGAGGCATTACATCGCTTTGGCATGACAGAGGAGG
GTTGTATCCAGGCATGGTTCTCTTTTCCCCATTCCATGCGCTTATTCTATATTCATGCATATAG
CAGCAAAATTTGGAATGAGGCAGCGTCTTACCGACTTGAAACCTATGGATCAAAAGTAGTGGAG
GGTGATTTGATCTGTTTGGATGAAGATGTTGATGAGCATTTTCCAAGTACTAAAGTTCATCTGG
TGACGGAAGAAGAGGAATCAGCTAACACATATACAATACACCAGGTGGTTCTTCCCGTACTTGG
ATACAATATTCAGTACCCGAAGAATCAAGTAGGGCAATGGTACCAGGAAACACTTAGCAGAGAT
GGACTACAGACATGTAGGTTTAAAGTACCTACTCTGAAACTGAACGTACCAGGATGCTATAGAC
AGATTTTGAAACATGCCCATAATCTCTCATACCAACTAATGGGAGATCATGATGTCAAAATGGA
AGGTTCCCACATCGATGAATCAACTTTATCTCTTTTGATCTCTTTTAATCTTGATGCTTCATGT
TATGCCACAGTTTGTCTGAGGGAAGTAATGAAGTATGACATTTAAAACTGATACCCTTAAATAA
AAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021726106 ⟹ XP_021581781

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	70,916,758 - 70,947,191 (+)	NCBI
SpeTri2.0	NW_004936512	2,217,986 - 2,248,079 (-)	NCBI

Sequence:

show sequence

CTCTAGGACTGGAGAAACTCTTGCAAAGGTCGATTCTTTAAGTGTGAGCCTGTCCCTTTAAATA
TGCCTCCGTCGGAGGCTGAAAAATCAAAAGCTTCCGGACATGCGCAGAACGTGCAGAGGAACGC
CTTCTTCTGGATTTAACACCGGCATTATTATTGAAGAATGGAAGAAGATACACATTATAGAATC
AGGTTTAGTTCTTTGTGTTTCATCAATGAACATGTTGGATTTCAGGGTACTATAAAAAGCTCAC
CTGGTGACTTTATTGTTATTGAGATCGATGAACAAGGACAGTTAGTTAATAAAGCCATTGATGA
ACCAATTAATGCAGTTAGTAAAATACCTGAGCTGAATAATTTTGCCAAAAAGCCAAAATTAGAT
CTTCAAAATTTGTCCTTTGAAGATGGAAGTTACCAAGAACTTAATACTTTGTCTAAGTGCTCTG
ATGGTGACCAAAATCACCAGTCTAATTCAGAAAAAGAAGATACCATCAGTGATAGGACTTCCAA
GTGTGAAGAAGAAAAAGCTGATGTATTAAACTTCTTTTTAGATGAAAAAACAAATGAATTACTG
AATCAGTTTGCCTGTGATGTAAAAGAGAAATGGAATTCAGAAACTGAGCTAATTGGGCCATCTC
CTGAATTCTCATTAGGCAGGATTCTTGACAAAAACCAAAGGGCTATTTTACACAGTGCTATTAG
GCAGAAATTTCCTTTCTTAATAACTGTAGGAAAAAACAGTGAAATTGTTATAAAACCAAATCTT
GAATATAAAGAACTTTGCCATTTGGTATCTGAAGAAGAAGCACTTGACTTTTTTAAGTATTTGG
ATGCAAAGAAAGAAAATTCCAAATTTACCTTTAAGCCTGATGCAAACAAAGACCACAGAAAAGC
TGTCCACCATTTTGTCAATAAGAAGTTTGGAAACCTTGTGGAGACCAAATCTTTTCCTGAACAG
ACTTACAGTGCTGGTGATCCAAATGTAGTAATAACAGTAAGATTTCGGGAAAAAACAAAGCACA
AGAAAAGGTCTCTTCTTGAATGCCAGGAAAGAAAAGTGATATATACAGCTTTTACCCTACGAAA
GGAAAATCTGGAGATGTTTGAAGCAATTGGTTTTTTAGCTCTCAAACTTGGTGTGATTCCTTCG
GATTTTACTTATGCAGGCCTTAAAGACAAGAAAGCCATCACCTATCAAGCAATGGTTGTGAGAA
AAGTGACTCCAGAGAGGTTGAAAAATATTGAAAAAGAAATTGAAAAGAAAAGAATGAATGTGTT
TAATATTCGATCTGTTGGTAAGCCCCTTAGACTTGGACAGCTCAAAGGAAATCACTTTAATATT
GTCGTCAGAAATTTACAAAATCAAATAAATGATTCTGCAAATTTGAAAGAGAGAATTTTTGAGG
CGATAGAAAATGTTAAGAATAAAGGTTTTGTGAATTACTATGGACCACAGAGATTTGGGAAGGG
AAGGAAAGTTCATACAGACCAAATTGGATTGGCTTTGCTGAAGAATGAAATGGTGAAGGCCATA
AAATTATTTCTTACACCAGAAGACTTGGATGATCCTGTAAATAGAGCAAAGAAATATTTTCTTC
AAACTGAGGATGCTAAAGGCACACTTTCATTGATGCCTGAATTCAAAGTTCGAGAGAGAGCGTT
GTTGGAGGCATTACATCGCTTTGGCATGACAGAGGAGGGTTGTATCCAGGCATGGTTCTCTTTT
CCCCATTCCATGCGCTTATTCTATATTCATGCATATAGCAGCAAAATTTGGAATGAGGCAGCGT
CTTACCGACTTGAAACCTATGGATCAAAAGTAGTGGAGGGTGATTTGATCTGTTTGGATGAAGA
TGTTGATGAGCATTTTCCAAGTACTAAAGTTCATCTGGTGACGGAAGAAGAGGAATCAGCTAAC
ACATATACAATACACCAGGTGGTTCTTCCCGTACTTGGATACAATATTCAGTACCCGAAGAATC
AAGTAGGGCAATGGTACCAGGAAACACTTAGCAGAGATGGACTACAGACATGTAGGTTTAAAGT
ACCTACTCTGAAACTGAACGTACCAGGATGCTATAGACAGATTTTGAAACATGCCCATAATCTC
TCATACCAACTAATGGGAGATCATGATGTCAAAATGGAAGGTTCCCACATCGATGAATCAACTT
TATCTCTTTTGATCTCTTTTAATCTTGATGCTTCATGTTATGCCACAGTTTGTCTGAGGGAAGT
AATGAAGTATGACATTTAAAACTGATACCCTTAAATAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_021726107 ⟹ XP_021581782

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	70,916,847 - 70,947,191 (+)	NCBI
SpeTri2.0	NW_004936512	2,217,581 - 2,248,079 (-)	NCBI

Sequence:

show sequence

CTCTAGGACTGGAGAAACTCTTGCAAAGGTCGATTCTTTAAGTGTGAGCCTGTCCCTTTAAATA
TGCCTCCGTCGGAGGCTGAAAAATCAAAAGCTTCCGGACATGCGCAGAACGTGCAGAGGAACGC
CTTCTTCTGGATTTAACACCGGTGCGAGATTTTGGCGCCACGTGTGGATCATATATATGTTCAA
GATCAGTTCGGGATTGAGGAGTCCTACTTTTTATCCTCAAGAGAAGGGCATTATTATTGAAGAA
TGGAAGAAGATACACATTATAGAATCAGGTTTAGTTCTTTGTGTTTCATCAATGAACATGTTGG
ATTTCAGGGTACTATAAAAAGCTCACCTGGTGACTTTATTGTTATTGAGATCGATGAACAAGGA
CAGTTAGTTAATAAAGCCATTGATGAACCAATTAATGCAGTTAGTAAAATACCTGAGCTGAATA
ATTTTGCCAAAAAGCCAAAATTAGATCTTCAAAATTTGTCCTTTGAAGATGGAAGTTACCAAGA
ACTTAATACTTTGTCTAAGTGCTCTGATGGTGACCAAAATCACCAGTCTAATTCAGAAAAAGAA
GATACCATCAGTGATAGGACTTCCAAGTGTGAAGAAGAAAAAGCTGATGTATTAAACTTCTTTT
TAGATGAAAAAACAAATGAATTACTGAATCAGTTTGCCTGTGATGTAAAAGAGAAATGGAATTC
AGAAACTGAGCTAATTGGGCCATCTCCTGAATTCTCATTAGGCAGGATTCTTGACAAAAACCAA
AGGGCTATTTTACACAGTGCTATTAGGCAGAAATTTCCTTTCTTAATAACTGTAGGAAAAAACA
GTGAAATTGTTATAAAACCAAATCTTGAATATAAAGAACTTTGCCATTTGGTATCTGAAGAAGA
AGCACTTGACTTTTTTAAGTATTTGGATGCAAAGAAAGAAAATTCCAAATTTACCTTTAAGCCT
GATGCAAACAAAGACCACAGAAAAGCTGTCCACCATTTTGTCAATAAGAAGTTTGGAAACCTTG
TGGAGACCAAATCTTTTCCTGAACAGACTTACAGTGCTGGTGATCCAAATGTAGTAATAACAGT
AAGATTTCGGGAAAAAACAAAGCACAAGAAAAGGTCTCTTCTTGAATGCCAGGAAAGAAAAGTG
ATATATACAGCTTTTACCCTACGAAAGGAAAATCTGGAGATGTTTGAAGCAATTGGTTTTTTAG
CTCTCAAACTTGGTGTGATTCCTTCGGATTTTACTTATGCAGGCCTTAAAGACAAGAAAGCCAT
CACCTATCAAGCAATGGTTGTGAGAAAAGTGACTCCAGAGAGGTTGAAAAATATTGAAAAAGAA
ATTGAAAAGAAAAGAATGAATGTGTTTAATATTCGATCTGTTGGTAAGCCCCTTAGACTTGGAC
AGCTCAAAGGAAATCACTTTAATATTGTCGTCAGAAATTTACAAAATCAAATAAATGATTCTGC
AAATTTGAAAGAGAGAATTTTTGAGGCGATAGAAAATGTTAAGAATAAAGGTTTTGTGAATTAC
TATGGACCACAGAGATTTGGGAAGGGAAGGAAAGTTCATACAGACCAAATTGGATTGGCTTTGC
TGAAGAATGAAATGGTGAAGGCCATAAAATTATTTCTTACACCAGAAGACTTGGATGATCCTGT
AAATAGAGCAAAGAAATATTTTCTTCAAACTGAGGATGCTAAAGGCACACTTTCATTGATGCCT
GAATTCAAAGTTCGAGAGAGAGCGTTGTTGGAGGCATTACATCGCTTTGGCATGACAGAGGAGG
GTTGTATCCAGGCATGGTTCTCTTTTCCCCATTCCATGCGCTTATTCTATATTCATGCATATAG
CAGCAAAATTTGGAATGAGGCAGCGTCTTACCGACTTGAAACCTATGGATCAAAAGTAGTGGAG
GGTGATTTGATCTGTTTGGATGAAGATGTTGATGAGCATTTTCCAAGTACTAAAGTTCATCTGG
TGACGGAAGAAGAGGAATCAGCTAACACATATACAATACACCAGGTGGTTCTTCCCGTACTTGG
ATACAATATTCAGTACCCGAAGAATCAAGTAGGGCAATGGTACCAGGAAACACTTAGCAGAGAT
GGACTACAGACATCATCCTGAGAAGTTGGGGAATTTGATGCTTTAAAGTTCCAGGGGACATATA
GTAAGTAAGTGTCAGGGTCTGAATTTAAGGTCTGTGTGAAAGCCTATGTTGTTTCTATTTTATC
ATGCTTCAGTGAACTTTATTCTGTGTCATAAAGGTGCCAATTGTTTTAAACTGTTAATACCATA
TATTGCTGTAAGCTAACACTTAAGATAAAAATTGTGAAATAGTATTCATATCCTCTAGCTCCTT
GCTTAGAACACAGGTGAAACTAGATTGCATTGAAATCA

hide sequence

RefSeq Acc Id:

XM_040280782 ⟹ XP_040136716

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	70,916,850 - 70,947,191 (+)	NCBI

RefSeq Acc Id:

XM_040280783 ⟹ XP_040136717

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404945	70,923,974 - 70,947,191 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005324906	(Get FASTA)	NCBI Sequence Viewer
	XP_021581781	(Get FASTA)	NCBI Sequence Viewer
	XP_021581782	(Get FASTA)	NCBI Sequence Viewer
	XP_040136716	(Get FASTA)	NCBI Sequence Viewer
	XP_040136717	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000005763.2
GenBank Protein	KAG3292129	(Get FASTA)	NCBI Sequence Viewer
	KAG3292130	(Get FASTA)	NCBI Sequence Viewer
	KAG3292131	(Get FASTA)	NCBI Sequence Viewer
	KAG3292132	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005324906 ⟸ XM_005324849
- Peptide Label:	isoform X1
- UniProtKB:	I3M7X8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEDTHYRIRFSSLCFINEHVGFQGTIKSSPGDFIVIEIDEQGQLVNKAIDEPINAVSKIPELN NFAKKPKLDLQNLSFEDGSYQELNTLSKCSDGDQNHQSNSEKEDTISDRTSKCEEEKADVLNFF LDEKTNELLNQFACDVKEKWNSETELIGPSPEFSLGRILDKNQRAILHSAIRQKFPFLITVGKN SEIVIKPNLEYKELCHLVSEEEALDFFKYLDAKKENSKFTFKPDANKDHRKAVHHFVNKKFGNL VETKSFPEQTYSAGDPNVVITVRFREKTKHKKRSLLECQERKVIYTAFTLRKENLEMFEAIGFL ALKLGVIPSDFTYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVGKPLRLG QLKGNHFNIVVRNLQNQINDSANLKERIFEAIENVKNKGFVNYYGPQRFGKGRKVHTDQIGLAL LKNEMVKAIKLFLTPEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEE GCIQAWFSFPHSMRLFYIHAYSSKIWNEAASYRLETYGSKVVEGDLICLDEDVDEHFPSTKVHL VTEEEESANTYTIHQVVLPVLGYNIQYPKNQVGQWYQETLSRDGLQTCRFKVPTLKLNVPGCYR QILKHAHNLSYQLMGDHDVKMEGSHIDESTLSLLISFNLDASCYATVCLREVMKYDI hide sequence

RefSeq Acc Id:

XP_021581782 ⟸ XM_021726107

- Peptide Label:

isoform X2

- Sequence:

show sequence

MEEDTHYRIRFSSLCFINEHVGFQGTIKSSPGDFIVIEIDEQGQLVNKAIDEPINAVSKIPELN
NFAKKPKLDLQNLSFEDGSYQELNTLSKCSDGDQNHQSNSEKEDTISDRTSKCEEEKADVLNFF
LDEKTNELLNQFACDVKEKWNSETELIGPSPEFSLGRILDKNQRAILHSAIRQKFPFLITVGKN
SEIVIKPNLEYKELCHLVSEEEALDFFKYLDAKKENSKFTFKPDANKDHRKAVHHFVNKKFGNL
VETKSFPEQTYSAGDPNVVITVRFREKTKHKKRSLLECQERKVIYTAFTLRKENLEMFEAIGFL
ALKLGVIPSDFTYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVGKPLRLG
QLKGNHFNIVVRNLQNQINDSANLKERIFEAIENVKNKGFVNYYGPQRFGKGRKVHTDQIGLAL
LKNEMVKAIKLFLTPEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEE
GCIQAWFSFPHSMRLFYIHAYSSKIWNEAASYRLETYGSKVVEGDLICLDEDVDEHFPSTKVHL
VTEEEESANTYTIHQVVLPVLGYNIQYPKNQVGQWYQETLSRDGLQTSS

hide sequence

RefSeq Acc Id:	XP_021581781 ⟸ XM_021726106
- Peptide Label:	isoform X1
- UniProtKB:	I3M7X8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEEDTHYRIRFSSLCFINEHVGFQGTIKSSPGDFIVIEIDEQGQLVNKAIDEPINAVSKIPELN NFAKKPKLDLQNLSFEDGSYQELNTLSKCSDGDQNHQSNSEKEDTISDRTSKCEEEKADVLNFF LDEKTNELLNQFACDVKEKWNSETELIGPSPEFSLGRILDKNQRAILHSAIRQKFPFLITVGKN SEIVIKPNLEYKELCHLVSEEEALDFFKYLDAKKENSKFTFKPDANKDHRKAVHHFVNKKFGNL VETKSFPEQTYSAGDPNVVITVRFREKTKHKKRSLLECQERKVIYTAFTLRKENLEMFEAIGFL ALKLGVIPSDFTYAGLKDKKAITYQAMVVRKVTPERLKNIEKEIEKKRMNVFNIRSVGKPLRLG QLKGNHFNIVVRNLQNQINDSANLKERIFEAIENVKNKGFVNYYGPQRFGKGRKVHTDQIGLAL LKNEMVKAIKLFLTPEDLDDPVNRAKKYFLQTEDAKGTLSLMPEFKVRERALLEALHRFGMTEE GCIQAWFSFPHSMRLFYIHAYSSKIWNEAASYRLETYGSKVVEGDLICLDEDVDEHFPSTKVHL VTEEEESANTYTIHQVVLPVLGYNIQYPKNQVGQWYQETLSRDGLQTCRFKVPTLKLNVPGCYR QILKHAHNLSYQLMGDHDVKMEGSHIDESTLSLLISFNLDASCYATVCLREVMKYDI hide sequence

RefSeq Acc Id:	XP_040136716 ⟸ XM_040280782
- Peptide Label:	isoform X1
- UniProtKB:	I3M7X8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_040136717 ⟸ XM_040280783
- Peptide Label:	isoform X3

RefSeq Acc Id:

ENSSTOP00000005763 ⟸ ENSSTOT00000006447

Protein Domains

TRUD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000006445	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000006447.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.2350.20	UniProtKB/TrEMBL
InterPro	PsdUridine_synth_cat_dom_sf	UniProtKB/TrEMBL
	PsdUridine_synth_TruD	UniProtKB/TrEMBL
	PsdUridine_synth_TruD_insert	UniProtKB/TrEMBL
	TruD_catalytic	UniProtKB/TrEMBL
NCBI Gene	Pus7l	ENTREZGENE
PANTHER	PSEUDOURIDYLATE SYNTHASE PUS7L	UniProtKB/TrEMBL
	PTHR13326	UniProtKB/TrEMBL
Pfam	TruD	UniProtKB/TrEMBL
PIRSF	Pseudouridin_synth_euk_prd	UniProtKB/TrEMBL
PROSITE	TRUD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55120	UniProtKB/TrEMBL
UniProt	I3M7X8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-09-18	Pus7l	pseudouridine synthase 7 like		pseudouridylate synthase 7 like	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar