Plcd1 (phospholipase C delta 1) - Rat Genome Database

Name: Plcd1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Plcd1 (phospholipase C delta 1) Chinchilla lanigera

Analyze

Symbol:

Plcd1

Name:

phospholipase C delta 1

RGD ID:

9034662

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); enzyme binding (ortholog); INVOLVED IN angiogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); labyrinthine layer blood vessel development (ortholog); PARTICIPATES IN G protein mediated signaling pathway; ASSOCIATED WITH alopecia (ortholog); Alzheimer's disease (ortholog); Brugada syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1; phospholipase C, delta 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLCD1 (phospholipase C delta 1)	NCBI	Ortholog
Mus musculus (house mouse):	Plcd1 (phospholipase C, delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Plcd1 (phospholipase C, delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	4,856,366 - 4,880,309 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	4,856,366 - 4,880,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia (ISO)

Alzheimer's disease (ISO)

Brugada syndrome (ISO)

congestive heart failure (ISO)

Hyperoxia (ISO)

hypertension (ISO)

Hypotension (ISO)

Myocardial Ischemia (ISO)

Myocardial Reperfusion Injury (ISO)

nonsyndromic congenital nail disorder 3 (ISO)

osteoarthritis (ISO)

Skin Neoplasms (ISO)

Visceral Heterotaxy 4, Autosomal (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

G protein-coupled receptor signaling pathway (ISO)

labyrinthine layer blood vessel development (ISO)

obsolete regulation of phospholipase C activity (ISO)

phosphatidylinositol metabolic process (ISO)

phospholipase C-activating G protein-coupled receptor signaling pathway (ISO)

positive regulation of inositol trisphosphate biosynthetic process (ISO)

positive regulation of norepinephrine secretion (ISO)

regulation of cell population proliferation (ISO)

regulation of cytosolic calcium ion concentration (ISO)

response to aluminum ion (ISO)

response to calcium ion (ISO)

response to hyperoxia (ISO)

response to organonitrogen compound (ISO)

response to peptide hormone (ISO)

response to prostaglandin F (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

mitochondrial membrane (ISO)

Molecular Function

calcium ion binding (ISO)

calcium-dependent phospholipid binding (ISO)

enzyme binding (ISO)

GTPase activating protein binding (ISO)

inositol 1,4,5 trisphosphate binding (ISO)

phosphatidylinositol phospholipase C activity (ISO)

phosphatidylinositol-4,5-bisphosphate binding (ISO)

phospholipid binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

G protein mediated signaling pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Plcd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	4,856,366 - 4,880,309 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	4,856,366 - 4,880,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLCD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	38,007,496 - 38,029,642 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	38,007,496 - 38,029,642 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	38,048,987 - 38,071,133 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	38,023,991 - 38,059,068 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	38,024,010 - 38,046,119	NCBI
Celera	3	37,983,370 - 38,005,535 (-)	NCBI		Celera
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	37,991,684 - 38,013,851 (-)	NCBI		HuRef
CHM1_1	3	38,000,639 - 38,022,806 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	38,011,677 - 38,033,823 (-)	NCBI		T2T-CHM13v2.0

Plcd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	118,900,595 - 118,922,570 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	118,980,645 - 119,002,614 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	118,920,225 - 118,942,194 (-)	NCBI		MGSCv36	mm8
Celera	9	119,539,423 - 119,561,381 (-)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	71.32	NCBI

Plcd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,672,955 - 127,695,939 (-)	NCBI		GRCr8
mRatBN7.2	8	118,795,196 - 118,818,186 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	118,795,201 - 118,818,186 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	124,397,003 - 124,419,829 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,595,953 - 122,618,783 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	120,428,662 - 120,451,606 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	127,753,514 - 127,782,070 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	127,753,539 - 127,782,070 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	126,970,643 - 126,991,422 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	124,023,090 - 124,052,193 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	124,042,827 - 124,071,930 (-)	NCBI
Celera	8	117,968,204 - 117,991,136 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

PLCD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	37,961,770 - 37,984,008 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	37,966,534 - 37,988,753 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	37,906,359 - 37,928,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	38,189,496 - 38,211,784 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	38,189,496 - 38,206,886 (-)	Ensembl	panpan1.1		panPan2

PLCD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	7,782,495 - 7,804,969 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	7,781,787 - 7,805,336 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	7,824,568 - 7,846,894 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	8,071,728 - 8,094,058 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	8,071,740 - 8,094,243 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	7,886,045 - 7,908,371 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	8,027,176 - 8,049,514 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	8,019,585 - 8,041,935 (-)	NCBI		UU_Cfam_GSD_1.0

Plcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	194,225,831 - 194,248,765 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	27,364,389 - 27,387,412 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	27,364,404 - 27,387,337 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLCD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	22,851,584 - 22,872,992 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	22,851,581 - 22,872,950 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	24,826,459 - 24,847,853 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLCD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	1,372,874 - 1,395,475 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	1,373,234 - 1,395,711 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	10,103,145 - 10,125,488 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plcd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	20,108,004 - 20,130,630 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624773	20,108,383 - 20,130,630 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005383723	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005383724	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005383725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01021703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01021704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01115444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000007328 ⟹ ENSCLAP00000007214

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955421	4,856,366 - 4,880,309 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000007329 ⟹ ENSCLAP00000007215

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955421	4,856,645 - 4,875,855 (-)	Ensembl

RefSeq Acc Id:

XM_005383723 ⟹ XP_005383780

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955421	4,856,366 - 4,880,104 (-)	NCBI

Sequence:

show sequence

GCCCGCGCCGCTCCTCCTCGCGCGAGTCCCGCGGTGCGCCCACCCGCCCGACGGGCATGGACCC
GGGCCGCGACTTCCTGACCCTGCACGCTAAAGTCTGCAGCTCAGCGGGAACTTCCCTCCGCAGC
TCTATCCTCCTTCCACCTTCCGCGGCCCCCGCCAACCCTGGTGACCTCGATTTTCCCCTGACCC
AGGCAAGCTTCTAGGACTGCGCTGGTTCCTGCTTCACGTGGCAGAGGCGCTGTGGAACACCATG
CAGTGCCTGGGGGGCCGGAGCCGGAGCCGCTCCAGGGAGCTTTACCTGAAGGAGCAGAGCCTGA
AGGTGGCGGCGCTCAATGGGCAGAGGCTGGGCCTGCAAGATGACAAGGACCTACAGGCCCTACT
CAAGGGCAGCCAGCTCCTAAAGGTGAAGTCCAGCTCCTGGCGAAGAGAACGTTTCTACAAGCTG
CAGGAGGACTGCAAGACCATCTGGCAGGAGTCCCGCAAAGTCATGAGGTCCCCAGAGTCCCAGC
TGTTCTCCATTGAGGACATTCAAGAGGTGCGGATGGGGCACCGCACAGAGGGCCTGGAGAAGTT
TGCCCGTGATGTGCCCGAGGACCGGTGCTTCGCCATTGTCTTCAAGGACCAGCGCAATACACTA
GACCTCATTGCCCCATCTCCAGCTGATGCCCAGCACTGGGTGCAGGGCCTACGCAAGATCATCC
ACCACTCAGGTTCCATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTGCTTGCGAAA
AGCTGACAAAAACAAGGACAATAAGATGAGCTTCAAGGAGGTGCAGAACTTCTTGAAGGAGCTC
AACATCCAAGTGGATGATAGCTACGCCTGGAAGATCTTCAGGGAATGTGACCACTCCCAGACGG
ATTCCCTGGAGGACGAGGAGATCGAAGTCTTCTACAAGATGCTGACCCAGCGAGTGGAGATCGA
CAACGCCTTCGCAGAGGCTGCAGGCTTAGGGGAGACCTTGTCAGTGGATCAGTTAGTGACATTT
TTGAAGCACCAACAGAGGGAGGAGGAGGCGGGGCCTGCACTGGCCCTGGCCCTCATCGAGCGCT
ATGAGCCCAGTGAGACTGCCAAGGCGCAGCGCCGGATGACCAAGGATGGCTTCCTCATGTACCT
GCTGTCAGCTGATGGCAACGCCTTCAACCTGGTGCACCGGCGAGTCTATCAGGACATGAGCCAG
CCGCTTAGTCACTACCTGGTGTCCTCCTCACACAACACCTACCTGCTGGAAGACCAGCTCACTG
GGCCCAGCAGCACTGAAGCCTACATCCGGGCACTGTGCAAAGGCTGCCGCTGCTTGGAGCTTGA
CTGTTGGGATGGCCCCAACCAGGAGCCGATCATCTACCATGGCTACACTTTCACTTCCAAGATC
CTCTTCTGTGACGTGATCAGGGCCATTCGGGACTATGCCTTCAAGGCCTCCCCCTACCCAGTCA
TCCTGTCCCTGGAGAACCACTGCAGTCTGGAGCAGCAGCGCGTGATGGCACGACACTTGCATGC
CATCCTGGGGCCCATGCTGCTGGACCGGCCACTGGACGGAGTTACCAGTAACCTGCCTTCCCCA
GAGCAACTGAAGGGGAAGATCCTGCTCAAGGGGAAGAAGCTTGGGGGGCTGCTGCCCCCTGAAG
GGGAAGGTGGCTCTGAGACCACTGTGTCAGATGAAGACGAGGCTGCTGAGATGGAGGATGAAGC
CGTGAGGAGCCGGGTGCAACACAAGCCCAAGGAGGACAAGCTCAGGCTGGTGCAGGAGCTCTCT
GACATGGTCATTTACTGCAAGAGTGTCCACTTTGGGGGCTTCTCCGATGCCGGCCCCTCCAGGC
AGGCTTTTTATGAGATGGCATCCTTCTCTGAGAACCGTGCTCTCCGAATGCTGCAGGAGTCTGG
AAACAGCTTTGTCCGCCACAACGTGGGCCACCTGAGCAGGATCTATCCGGCTGGCTGGAGAACA
GACTCCTCCAACTATAGCCCTGTGGACATGTGGAATGGGGGCTGCCAGATCGTGGCCCTGAACT
TCCAGACACCTGGGCCAGAGATGGATGTGTACCAGGGCCGCTTCCAGGACAATGGGGCCTGTGG
GTATGTGCTGAAGCCTGATTTCCTGAGAGACCTCAACACCAGCTTCAATGCACGTGCTCTGACT
CAAGGGCCCTGGTTAGCTCCAAAGAAGCTGAATGTGAAGGTCATCTCAGGGCAGCAGCTGCCGA
AAGTCAATAAGAATAAGAACTCAATTGTGGACCCCAAGGTGACAGTGGAGATCCATGGTGTGAG
CCAGGACATGGCCAGTCGCCAGACTGGTGTAATCACTAATAACGGCTTCAACCCACGGTGGGAC
ACAGAGTTTAAGTTTGAGGTGGTGGTGCCTGAGCTTGCCCTTGTCCGCTTTGTTGTGGAGGACT
ATGATGCCTCCTCCAAGAACGACTTCATTGGCCAGAGCACCATCCCCTGGCACAGCCTCAAGCA
GGGATACCGCCACATCCACCTCTTATCCAAGAACGGAGACCAGCATCCATCAGCCACCCTGTTT
GTGAAGATCACACTCCAGGACTAAGGCTTGGGGCATCCAGTGGGTTCTGCCCTGGGTGGGTTAG
GCCCTGTATCCACACCTGGAGCCAGGACTAGTGCGGCCACTCCAACCTCTGGCACTGAGCCAGA
GACCCCGAACTGCCTTTAGCTCTAACACTGTCAGTGCTGCTGCCTCTGTGGGGTCCCAGGAGCT
GGCTCAGTGGCTACAACTGTCCTTAATTCCGTTAAGAAGAACATTGCGGCGCTCTGCACCCTTT
GGCCAGCCTTAGGTCAAGAGTTTTTATAAGAATCACATTGAAAGTAA

hide sequence

RefSeq Acc Id:

XM_005383724 ⟹ XP_005383781

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955421	4,856,366 - 4,875,771 (-)	NCBI

Sequence:

show sequence

CCTGGGGGGCCGGAGCCGGAGCCGCTCCAGGGAGCTTTACCTGAAGGAGCAGAGCCTGAAGGTG
GCGGCGCTCAATGGGCAGAGGCTGGATCTGCTAACAAATTTGTGACGCACCATTGGGCATGTGG
ACCAAAGTGTAACTGGGACGACTGTGTACCCCCATGAGGCCTGCAAGATGACAAGGACCTACAG
GCCCTACTCAAGGGCAGCCAGCTCCTAAAGGTGAAGTCCAGCTCCTGGCGAAGAGAACGTTTCT
ACAAGCTGCAGGAGGACTGCAAGACCATCTGGCAGGAGTCCCGCAAAGTCATGAGGTCCCCAGA
GTCCCAGCTGTTCTCCATTGAGGACATTCAAGAGGTGCGGATGGGGCACCGCACAGAGGGCCTG
GAGAAGTTTGCCCGTGATGTGCCCGAGGACCGGTGCTTCGCCATTGTCTTCAAGGACCAGCGCA
ATACACTAGACCTCATTGCCCCATCTCCAGCTGATGCCCAGCACTGGGTGCAGGGCCTACGCAA
GATCATCCACCACTCAGGTTCCATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTGC
TTGCGAAAAGCTGACAAAAACAAGGACAATAAGATGAGCTTCAAGGAGGTGCAGAACTTCTTGA
AGGAGCTCAACATCCAAGTGGATGATAGCTACGCCTGGAAGATCTTCAGGGAATGTGACCACTC
CCAGACGGATTCCCTGGAGGACGAGGAGATCGAAGTCTTCTACAAGATGCTGACCCAGCGAGTG
GAGATCGACAACGCCTTCGCAGAGGCTGCAGGCTTAGGGGAGACCTTGTCAGTGGATCAGTTAG
TGACATTTTTGAAGCACCAACAGAGGGAGGAGGAGGCGGGGCCTGCACTGGCCCTGGCCCTCAT
CGAGCGCTATGAGCCCAGTGAGACTGCCAAGGCGCAGCGCCGGATGACCAAGGATGGCTTCCTC
ATGTACCTGCTGTCAGCTGATGGCAACGCCTTCAACCTGGTGCACCGGCGAGTCTATCAGGACA
TGAGCCAGCCGCTTAGTCACTACCTGGTGTCCTCCTCACACAACACCTACCTGCTGGAAGACCA
GCTCACTGGGCCCAGCAGCACTGAAGCCTACATCCGGGCACTGTGCAAAGGCTGCCGCTGCTTG
GAGCTTGACTGTTGGGATGGCCCCAACCAGGAGCCGATCATCTACCATGGCTACACTTTCACTT
CCAAGATCCTCTTCTGTGACGTGATCAGGGCCATTCGGGACTATGCCTTCAAGGCCTCCCCCTA
CCCAGTCATCCTGTCCCTGGAGAACCACTGCAGTCTGGAGCAGCAGCGCGTGATGGCACGACAC
TTGCATGCCATCCTGGGGCCCATGCTGCTGGACCGGCCACTGGACGGAGTTACCAGTAACCTGC
CTTCCCCAGAGCAACTGAAGGGGAAGATCCTGCTCAAGGGGAAGAAGCTTGGGGGGCTGCTGCC
CCCTGAAGGGGAAGGTGGCTCTGAGACCACTGTGTCAGATGAAGACGAGGCTGCTGAGATGGAG
GATGAAGCCGTGAGGAGCCGGGTGCAACACAAGCCCAAGGAGGACAAGCTCAGGCTGGTGCAGG
AGCTCTCTGACATGGTCATTTACTGCAAGAGTGTCCACTTTGGGGGCTTCTCCGATGCCGGCCC
CTCCAGGCAGGCTTTTTATGAGATGGCATCCTTCTCTGAGAACCGTGCTCTCCGAATGCTGCAG
GAGTCTGGAAACAGCTTTGTCCGCCACAACGTGGGCCACCTGAGCAGGATCTATCCGGCTGGCT
GGAGAACAGACTCCTCCAACTATAGCCCTGTGGACATGTGGAATGGGGGCTGCCAGATCGTGGC
CCTGAACTTCCAGACACCTGGGCCAGAGATGGATGTGTACCAGGGCCGCTTCCAGGACAATGGG
GCCTGTGGGTATGTGCTGAAGCCTGATTTCCTGAGAGACCTCAACACCAGCTTCAATGCACGTG
CTCTGACTCAAGGGCCCTGGTTAGCTCCAAAGAAGCTGAATGTGAAGGTCATCTCAGGGCAGCA
GCTGCCGAAAGTCAATAAGAATAAGAACTCAATTGTGGACCCCAAGGTGACAGTGGAGATCCAT
GGTGTGAGCCAGGACATGGCCAGTCGCCAGACTGGTGTAATCACTAATAACGGCTTCAACCCAC
GGTGGGACACAGAGTTTAAGTTTGAGGTGGTGGTGCCTGAGCTTGCCCTTGTCCGCTTTGTTGT
GGAGGACTATGATGCCTCCTCCAAGAACGACTTCATTGGCCAGAGCACCATCCCCTGGCACAGC
CTCAAGCAGGGATACCGCCACATCCACCTCTTATCCAAGAACGGAGACCAGCATCCATCAGCCA
CCCTGTTTGTGAAGATCACACTCCAGGACTAAGGCTTGGGGCATCCAGTGGGTTCTGCCCTGGG
TGGGTTAGGCCCTGTATCCACACCTGGAGCCAGGACTAGTGCGGCCACTCCAACCTCTGGCACT
GAGCCAGAGACCCCGAACTGCCTTTAGCTCTAACACTGTCAGTGCTGCTGCCTCTGTGGGGTCC
CAGGAGCTGGCTCAGTGGCTACAACTGTCCTTAATTCCGTTAAGAAGAACATTGCGGCGCTCTG
CACCCTTTGGCCAGCCTTAGGTCAAGAGTTTTTATAAGAATCACATTGAAAGTAA

hide sequence

RefSeq Acc Id:

XM_005383725 ⟹ XP_005383782

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955421	4,856,366 - 4,880,309 (-)	NCBI

Sequence:

show sequence

GCCCCGGCCAGGGCTGGCGGGTGTTGCAGGCCGCGGGCTTTGCCTCCTTCCCAAATCCCGGAGG
GGGCGGGGAGAGAAGCGGGTTGGAAGGCCCGGGGGGTGGGGGCGCGGGCCCAGGGGCGGGGCGG
TGTCCCCGGCCCACCCCGGCCTCCTCCCACCGCGGCGCAGTTGGGTCCCGCACCGCGCAGCGCT
CGGACTGGAGGCCGCCCGCGCCGCTCCTCCTCGCGCGAGTCCCGCGGTGCGCCCACCCGCCCGA
CGGGCATGGACCCGGGCCGCGACTTCCTGACCCTGCACGGCCTGCAAGATGACAAGGACCTACA
GGCCCTACTCAAGGGCAGCCAGCTCCTAAAGGTGAAGTCCAGCTCCTGGCGAAGAGAACGTTTC
TACAAGCTGCAGGAGGACTGCAAGACCATCTGGCAGGAGTCCCGCAAAGTCATGAGGTCCCCAG
AGTCCCAGCTGTTCTCCATTGAGGACATTCAAGAGGTGCGGATGGGGCACCGCACAGAGGGCCT
GGAGAAGTTTGCCCGTGATGTGCCCGAGGACCGGTGCTTCGCCATTGTCTTCAAGGACCAGCGC
AATACACTAGACCTCATTGCCCCATCTCCAGCTGATGCCCAGCACTGGGTGCAGGGCCTACGCA
AGATCATCCACCACTCAGGTTCCATGGACCAGCGGCAGAAGCTGCAGCACTGGATTCACTCCTG
CTTGCGAAAAGCTGACAAAAACAAGGACAATAAGATGAGCTTCAAGGAGGTGCAGAACTTCTTG
AAGGAGCTCAACATCCAAGTGGATGATAGCTACGCCTGGAAGATCTTCAGGGAATGTGACCACT
CCCAGACGGATTCCCTGGAGGACGAGGAGATCGAAGTCTTCTACAAGATGCTGACCCAGCGAGT
GGAGATCGACAACGCCTTCGCAGAGGCTGCAGGCTTAGGGGAGACCTTGTCAGTGGATCAGTTA
GTGACATTTTTGAAGCACCAACAGAGGGAGGAGGAGGCGGGGCCTGCACTGGCCCTGGCCCTCA
TCGAGCGCTATGAGCCCAGTGAGACTGCCAAGGCGCAGCGCCGGATGACCAAGGATGGCTTCCT
CATGTACCTGCTGTCAGCTGATGGCAACGCCTTCAACCTGGTGCACCGGCGAGTCTATCAGGAC
ATGAGCCAGCCGCTTAGTCACTACCTGGTGTCCTCCTCACACAACACCTACCTGCTGGAAGACC
AGCTCACTGGGCCCAGCAGCACTGAAGCCTACATCCGGGCACTGTGCAAAGGCTGCCGCTGCTT
GGAGCTTGACTGTTGGGATGGCCCCAACCAGGAGCCGATCATCTACCATGGCTACACTTTCACT
TCCAAGATCCTCTTCTGTGACGTGATCAGGGCCATTCGGGACTATGCCTTCAAGGCCTCCCCCT
ACCCAGTCATCCTGTCCCTGGAGAACCACTGCAGTCTGGAGCAGCAGCGCGTGATGGCACGACA
CTTGCATGCCATCCTGGGGCCCATGCTGCTGGACCGGCCACTGGACGGAGTTACCAGTAACCTG
CCTTCCCCAGAGCAACTGAAGGGGAAGATCCTGCTCAAGGGGAAGAAGCTTGGGGGGCTGCTGC
CCCCTGAAGGGGAAGGTGGCTCTGAGACCACTGTGTCAGATGAAGACGAGGCTGCTGAGATGGA
GGATGAAGCCGTGAGGAGCCGGGTGCAACACAAGCCCAAGGAGGACAAGCTCAGGCTGGTGCAG
GAGCTCTCTGACATGGTCATTTACTGCAAGAGTGTCCACTTTGGGGGCTTCTCCGATGCCGGCC
CCTCCAGGCAGGCTTTTTATGAGATGGCATCCTTCTCTGAGAACCGTGCTCTCCGAATGCTGCA
GGAGTCTGGAAACAGCTTTGTCCGCCACAACGTGGGCCACCTGAGCAGGATCTATCCGGCTGGC
TGGAGAACAGACTCCTCCAACTATAGCCCTGTGGACATGTGGAATGGGGGCTGCCAGATCGTGG
CCCTGAACTTCCAGACACCTGGGCCAGAGATGGATGTGTACCAGGGCCGCTTCCAGGACAATGG
GGCCTGTGGGTATGTGCTGAAGCCTGATTTCCTGAGAGACCTCAACACCAGCTTCAATGCACGT
GCTCTGACTCAAGGGCCCTGGTTAGCTCCAAAGAAGCTGAATGTGAAGGTCATCTCAGGGCAGC
AGCTGCCGAAAGTCAATAAGAATAAGAACTCAATTGTGGACCCCAAGGTGACAGTGGAGATCCA
TGGTGTGAGCCAGGACATGGCCAGTCGCCAGACTGGTGTAATCACTAATAACGGCTTCAACCCA
CGGTGGGACACAGAGTTTAAGTTTGAGGTGGTGGTGCCTGAGCTTGCCCTTGTCCGCTTTGTTG
TGGAGGACTATGATGCCTCCTCCAAGAACGACTTCATTGGCCAGAGCACCATCCCCTGGCACAG
CCTCAAGCAGGGATACCGCCACATCCACCTCTTATCCAAGAACGGAGACCAGCATCCATCAGCC
ACCCTGTTTGTGAAGATCACACTCCAGGACTAAGGCTTGGGGCATCCAGTGGGTTCTGCCCTGG
GTGGGTTAGGCCCTGTATCCACACCTGGAGCCAGGACTAGTGCGGCCACTCCAACCTCTGGCAC
TGAGCCAGAGACCCCGAACTGCCTTTAGCTCTAACACTGTCAGTGCTGCTGCCTCTGTGGGGTC
CCAGGAGCTGGCTCAGTGGCTACAACTGTCCTTAATTCCGTTAAGAAGAACATTGCGGCGCTCT
GCACCCTTTGGCCAGCCTTAGGTCAAGAGTTTTTATAAGAATCACATTGAAAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005383780	(Get FASTA)	NCBI Sequence Viewer
	XP_005383781	(Get FASTA)	NCBI Sequence Viewer
	XP_005383782	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000007214
	ENSCLAP00000007214.1
	ENSCLAP00000007215
	ENSCLAP00000007215.1

RefSeq Acc Id:	XP_005383782 ⟸ XM_005383725
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2V3V8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPGRDFLTLHGLQDDKDLQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPES QLFSIEDIQEVRMGHRTEGLEKFARDVPEDRCFAIVFKDQRNTLDLIAPSPADAQHWVQGLRKI IHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMSFKEVQNFLKELNIQVDDSYAWKIFRECDHSQ TDSLEDEEIEVFYKMLTQRVEIDNAFAEAAGLGETLSVDQLVTFLKHQQREEEAGPALALALIE RYEPSETAKAQRRMTKDGFLMYLLSADGNAFNLVHRRVYQDMSQPLSHYLVSSSHNTYLLEDQL TGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVIRAIRDYAFKASPYP VILSLENHCSLEQQRVMARHLHAILGPMLLDRPLDGVTSNLPSPEQLKGKILLKGKKLGGLLPP EGEGGSETTVSDEDEAAEMEDEAVRSRVQHKPKEDKLRLVQELSDMVIYCKSVHFGGFSDAGPS RQAFYEMASFSENRALRMLQESGNSFVRHNVGHLSRIYPAGWRTDSSNYSPVDMWNGGCQIVAL NFQTPGPEMDVYQGRFQDNGACGYVLKPDFLRDLNTSFNARALTQGPWLAPKKLNVKVISGQQL PKVNKNKNSIVDPKVTVEIHGVSQDMASRQTGVITNNGFNPRWDTEFKFEVVVPELALVRFVVE DYDASSKNDFIGQSTIPWHSLKQGYRHIHLLSKNGDQHPSATLFVKITLQD hide sequence

RefSeq Acc Id:	XP_005383780 ⟸ XM_005383723
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2UYE5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQCLGGRSRSRSRELYLKEQSLKVAALNGQRLGLQDDKDLQALLKGSQLLKVKSSSWRRERFYK LQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDVPEDRCFAIVFKDQRNT LDLIAPSPADAQHWVQGLRKIIHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMSFKEVQNFLKE LNIQVDDSYAWKIFRECDHSQTDSLEDEEIEVFYKMLTQRVEIDNAFAEAAGLGETLSVDQLVT FLKHQQREEEAGPALALALIERYEPSETAKAQRRMTKDGFLMYLLSADGNAFNLVHRRVYQDMS QPLSHYLVSSSHNTYLLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSK ILFCDVIRAIRDYAFKASPYPVILSLENHCSLEQQRVMARHLHAILGPMLLDRPLDGVTSNLPS PEQLKGKILLKGKKLGGLLPPEGEGGSETTVSDEDEAAEMEDEAVRSRVQHKPKEDKLRLVQEL SDMVIYCKSVHFGGFSDAGPSRQAFYEMASFSENRALRMLQESGNSFVRHNVGHLSRIYPAGWR TDSSNYSPVDMWNGGCQIVALNFQTPGPEMDVYQGRFQDNGACGYVLKPDFLRDLNTSFNARAL TQGPWLAPKKLNVKVISGQQLPKVNKNKNSIVDPKVTVEIHGVSQDMASRQTGVITNNGFNPRW DTEFKFEVVVPELALVRFVVEDYDASSKNDFIGQSTIPWHSLKQGYRHIHLLSKNGDQHPSATL FVKITLQD hide sequence

RefSeq Acc Id:

XP_005383781 ⟸ XM_005383724

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRSPESQLFSIEDIQEVRMGHRTEGLEKFARDVPEDRCFAIVFKDQRNTLDLIAPSPADAQHWV
QGLRKIIHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMSFKEVQNFLKELNIQVDDSYAWKIFR
ECDHSQTDSLEDEEIEVFYKMLTQRVEIDNAFAEAAGLGETLSVDQLVTFLKHQQREEEAGPAL
ALALIERYEPSETAKAQRRMTKDGFLMYLLSADGNAFNLVHRRVYQDMSQPLSHYLVSSSHNTY
LLEDQLTGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVIRAIRDYAF
KASPYPVILSLENHCSLEQQRVMARHLHAILGPMLLDRPLDGVTSNLPSPEQLKGKILLKGKKL
GGLLPPEGEGGSETTVSDEDEAAEMEDEAVRSRVQHKPKEDKLRLVQELSDMVIYCKSVHFGGF
SDAGPSRQAFYEMASFSENRALRMLQESGNSFVRHNVGHLSRIYPAGWRTDSSNYSPVDMWNGG
CQIVALNFQTPGPEMDVYQGRFQDNGACGYVLKPDFLRDLNTSFNARALTQGPWLAPKKLNVKV
ISGQQLPKVNKNKNSIVDPKVTVEIHGVSQDMASRQTGVITNNGFNPRWDTEFKFEVVVPELAL
VRFVVEDYDASSKNDFIGQSTIPWHSLKQGYRHIHLLSKNGDQHPSATLFVKITLQD

hide sequence

RefSeq Acc Id:

ENSCLAP00000007215 ⟸ ENSCLAT00000007329

RefSeq Acc Id:

ENSCLAP00000007214 ⟸ ENSCLAT00000007328

Protein Domains

C2 EF-hand PH PI-PLC Y-box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005079	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007328	ENTREZGENE
	ENSCLAT00000007328.1	UniProtKB/TrEMBL
	ENSCLAT00000007329	ENTREZGENE
	ENSCLAT00000007329.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	2.60.40.150	UniProtKB/TrEMBL
	3.20.20.190	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
	PI-PLC_fam	UniProtKB/TrEMBL
	PLC-delta1	UniProtKB/TrEMBL
	PLC-delta1_EF	UniProtKB/TrEMBL
	PLC-like_Pdiesterase_TIM-brl	UniProtKB/TrEMBL
	PLC_EF-hand-like	UniProtKB/TrEMBL
	PLipase_C_PInositol-sp_X_dom	UniProtKB/TrEMBL
	PLipase_C_Pinositol-sp_Y	UniProtKB/TrEMBL
NCBI Gene	Plcd1	ENTREZGENE
PANTHER	PTHR10336	UniProtKB/TrEMBL
	PTHR10336:SF80	UniProtKB/TrEMBL
Pfam	EF-hand_like	UniProtKB/TrEMBL
	PF00168	UniProtKB/TrEMBL
	PH_12	UniProtKB/TrEMBL
	PI-PLC-X	UniProtKB/TrEMBL
	PI-PLC-Y	UniProtKB/TrEMBL
PRINTS	PHPHLIPASEC	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
	PIPLC_X_DOMAIN	UniProtKB/TrEMBL
	PIPLC_Y_DOMAIN	UniProtKB/TrEMBL
	PS50004	UniProtKB/TrEMBL
SMART	PLCXc	UniProtKB/TrEMBL
	PLCYc	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
	SSF49562	UniProtKB/TrEMBL
	SSF51695	UniProtKB/TrEMBL
UniProt	A0A8C2UYE5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2V3V8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-16	Plcd1	phospholipase C delta 1		phospholipase C, delta 1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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