PLCD1 (phospholipase C delta 1) - Rat Genome Database

Name: PLCD1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PLCD1 (phospholipase C delta 1) Pan paniscus

Analyze

Symbol:

PLCD1

Name:

phospholipase C delta 1

RGD ID:

12013006

Description:

ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); enzyme binding (ortholog); INVOLVED IN angiogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); labyrinthine layer blood vessel development (ortholog); PARTICIPATES IN G protein mediated signaling pathway; ASSOCIATED WITH alopecia (ortholog); Alzheimer's disease (ortholog); Brugada syndrome (ortholog); FOUND IN cytosol (ortholog); mitochondrial membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLCD1 (phospholipase C delta 1)	NCBI	Ortholog
Mus musculus (house mouse):	Plcd1 (phospholipase C, delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Plcd1 (phospholipase C, delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLCD1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Plcd1 (phospholipase C delta 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	37,961,770 - 37,984,008 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	37,966,534 - 37,988,753 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	37,906,359 - 37,928,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	38,189,496 - 38,211,784 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	38,189,496 - 38,206,886 (-)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alopecia (ISO)

Alzheimer's disease (ISO)

Brugada syndrome (ISO)

congestive heart failure (ISO)

Hyperoxia (ISO)

hypertension (ISO)

Hypotension (ISO)

Myocardial Ischemia (ISO)

Myocardial Reperfusion Injury (ISO)

nonsyndromic congenital nail disorder 3 (ISO)

osteoarthritis (ISO)

Skin Neoplasms (ISO)

Visceral Heterotaxy 4, Autosomal (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

angiogenesis (ISO)

G protein-coupled receptor signaling pathway (ISO)

intracellular signal transduction (IEA)

labyrinthine layer blood vessel development (ISO)

lipid catabolic process (IEA)

lipid metabolic process (IEA)

obsolete regulation of phospholipase C activity (ISO)

phosphatidylinositol metabolic process (IEA)

phosphatidylinositol-mediated signaling (IEA)

phospholipase C-activating G protein-coupled receptor signaling pathway (ISO)

positive regulation of inositol trisphosphate biosynthetic process (ISO)

positive regulation of norepinephrine secretion (ISO)

regulation of cell population proliferation (ISO)

regulation of cytosolic calcium ion concentration (ISO)

release of sequestered calcium ion into cytosol (IEA)

response to aluminum ion (ISO)

response to calcium ion (ISO)

response to hyperoxia (ISO)

response to organonitrogen compound (ISO)

response to peptide hormone (ISO)

response to prostaglandin F (ISO)

signal transduction (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (ISO)

mitochondrial membrane (ISO)

Molecular Function

calcium ion binding (IEA,ISO)

calcium-dependent phospholipid binding (ISO)

enzyme binding (ISO)

GTPase activating protein binding (IEA)

hydrolase activity (IEA)

inositol 1,4,5 trisphosphate binding (ISO)

metal ion binding (IEA)

phosphatidylinositol phospholipase C activity (IEA,ISO)

phosphatidylinositol-4,5-bisphosphate binding (IEA,ISO)

phospholipid binding (ISO)

phosphoric diester hydrolase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

G protein mediated signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PLCD1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	37,961,770 - 37,984,008 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	37,966,534 - 37,988,753 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	37,906,359 - 37,928,564 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	38,189,496 - 38,211,784 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	38,189,496 - 38,206,886 (-)	Ensembl	panpan1.1		panPan2

PLCD1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	38,007,496 - 38,029,642 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	38,007,496 - 38,029,642 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	38,048,987 - 38,071,133 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	38,023,991 - 38,059,068 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	3	38,024,010 - 38,046,119	NCBI
Celera	3	37,983,370 - 38,005,535 (-)	NCBI		Celera
Cytogenetic Map	3	p22.2	NCBI
HuRef	3	37,991,684 - 38,013,851 (-)	NCBI		HuRef
CHM1_1	3	38,000,639 - 38,022,806 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	38,011,677 - 38,033,823 (-)	NCBI		T2T-CHM13v2.0

Plcd1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	118,900,595 - 118,922,570 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	118,900,595 - 118,922,570 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	119,071,527 - 119,093,502 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	119,071,527 - 119,093,502 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	118,980,645 - 119,002,614 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	118,920,225 - 118,942,194 (-)	NCBI		MGSCv36	mm8
Celera	9	119,539,423 - 119,561,381 (-)	NCBI		Celera
Cytogenetic Map	9	F3	NCBI
cM Map	9	71.32	NCBI

Plcd1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	127,672,955 - 127,695,939 (-)	NCBI		GRCr8
mRatBN7.2	8	118,795,196 - 118,818,186 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	118,795,201 - 118,818,186 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	124,397,003 - 124,419,829 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	122,595,953 - 122,618,783 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	120,428,662 - 120,451,606 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	127,753,514 - 127,782,070 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	127,753,539 - 127,782,070 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	126,970,643 - 126,991,422 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	124,023,090 - 124,052,193 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	124,042,827 - 124,071,930 (-)	NCBI
Celera	8	117,968,204 - 117,991,136 (-)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

Plcd1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	4,856,366 - 4,880,309 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955421	4,856,366 - 4,880,309 (-)	NCBI	ChiLan1.0	ChiLan1.0

PLCD1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	7,782,495 - 7,804,969 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	7,781,787 - 7,805,336 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	7,824,568 - 7,846,894 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	8,071,728 - 8,094,058 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	8,071,740 - 8,094,243 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	7,886,045 - 7,908,371 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	8,027,176 - 8,049,514 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	8,019,585 - 8,041,935 (-)	NCBI		UU_Cfam_GSD_1.0

Plcd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	194,225,831 - 194,248,765 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936473	27,364,389 - 27,387,412 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936473	27,364,404 - 27,387,337 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLCD1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	22,851,584 - 22,872,992 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	22,851,581 - 22,872,950 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	24,826,459 - 24,847,853 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLCD1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	1,372,874 - 1,395,475 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	1,373,234 - 1,395,711 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	10,103,145 - 10,125,488 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Plcd1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	20,108,004 - 20,130,630 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624773	20,108,383 - 20,130,630 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003826105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003826106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024928389	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063602261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000029844 ⟹ ENSPPAP00000007461

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	38,189,496 - 38,206,886 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000029850 ⟹ ENSPPAP00000007465

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	38,189,773 - 38,204,253 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000029851 ⟹ ENSPPAP00000007466

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	38,189,773 - 38,202,616 (-)	Ensembl

RefSeq Acc Id:

ENSPPAT00000029852 ⟹ ENSPPAP00000007467

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	3	38,191,461 - 38,204,253 (-)	Ensembl

RefSeq Acc Id:

XM_003826105 ⟹ XP_003826153

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	37,961,770 - 37,984,008 (-)	NCBI
NHGRI_mPanPan1	3	37,966,534 - 37,988,753 (-)	NCBI
Mhudiblu_PPA_v0	3	37,906,359 - 37,928,564 (-)	NCBI
PanPan1.1	3	38,189,496 - 38,211,784 (-)	NCBI

Sequence:

show sequence

CCCAGAAGGGGGCGGGGAGAGACGCGGGTTGGCGGGCTCAGGGGGCGGGGGCGCAGGGCAGCGG
GGGCGGGGCGGTGTCCCGGGACCACCCCCGGCCTCCTCCCACCGCGATCCATTCAGGTCCCTGC
ACCGCACTCCGCTCGGACCCCAGGCCGCCGGTGCTGTCGCTACTCAAGTGAGTCCCGCAGTGCC
CCTCCCGCCGCGCCGCCCGTCGGGCATGGACTCGGGCCGGGACTTCCTGACCCTGCACGGCCTA
CAGGATGATGAGGATCTACAGGCGCTGCTGAAGGGCAGCCAGCTCCTGAAGGTGAAGTCCAGCT
CATGGAGGAGAGAGCGCTTCTACAAGTTGCAGGAGGACTGCAAGACCATCTGGCAGGAGTCCCG
CAAGGTCATGCGGACCCCGGAGTCCCAGCTGTTCTCCATCGAGGACATTCAGGAGGTGCGAATG
GGGCACCGCACGGAGGGTCTGGAGAAGTTCGCCCGTGATGTGCCCGAGGACCGCTGCTTCTCCA
TTGTCTTCAAGGACCAGCGCAATACACTAGACCTCATCGCCCCATCGCCAGCTGATGCCCAGCA
CTGGGTGCTGGGGCTGCACAAGATCATCCACCACTCAGGCTCCATGGACCAGCGTCAGAAGCTA
CAGCACTGGATTCACTCCTGCTTGCGAAAAGCTGACAAAAACAAGGACAACAAGATGAGCTTCA
AGGAGCTGCAGAACTTCCTGAAGGAGCTCAACATCCAGGTGGACGACAGCTATGCCCGGAAGAT
CTTCAGGGAGTGTGACCACTCCCAGACAGACTCCCTGGAGGACGAGGAGATTGAGGCCTTCTAC
AAGATGCTGACCCAGCGGGTGGAGATCGACCGCACCTTCGCCGAGGCCGTGGGCTCAGGGGAGA
CTCTGTCGGTGGATCAGTTAGTGACGTTCCTGCAGCACCAGCAGCGGGAGGAGGCGGCAGGGCC
TGCGCTGGCCCTCTCCCTCATTGAGCGCTACGAGCCCAGCGAGACTGCCAAGGCGCAGCGGCAG
ATGACCAAGGACGGCTTCCTCATGTACTTACTGTCGGCTGACGGCAGCGCCTTCAGCCTGGCAC
ACCGCCGTGTCTACCAGGACATGGGCCAGCCGCTTAGCCACTACCTGGTGTCCTCTTCACACAA
CACCTACCTGCTGGAGGACCAGCTAGCCGGGCCCAGCAGCACTGAAGCCTACATCCGGGCACTG
TGCAAAGGCTGCCGATGCCTGGAGCTTGACTGCTGGGACGGGCCCAACCAGGAACCAATCATCT
ACCACGGCTATACTTTCACTTCCAAGATCCTCTTCTGCGATGTGATCAGGGCCATCCGGGACTA
TGCCTTCAAGGCGTCCCCCTACCCTGTCATCCTATCCCTGGAGAACCACTGCACACTGGAGCAG
CAGCGCGTGATGGCGCGGCACCTGCACGCCATCCTGGGCCCCATGCTGTTGAACCGACCACTGG
ATGGGGTCACCAACAGCCTGCCCTCCCCTGAGCAACTGAAGGGGAAGATCCTGCTGAAGGGGAA
GAAGCTCGGGGGGCTCCTGCCCCCTGCAGGGGAGGGTGGCCCTGAGGCCACTGTGGTGTCAGAC
GAAGACGAGGCTGCTGAGATGGAGGATGAGGCAGTGAGGAGCCGTGTGCAGCACAAGCCCAAGG
AGGACAAGCTCAGGCTAGCACAGGAGCTCTCTGACATGGTCATTTACTGCAAGAGTGTCCACTT
TGGGGGCTTCTCCAGTCCTGGCACCCCTGGACAGGCCTTCTACGAGATGGCGTCCTTCTCTGAG
AACCGTGCCCTTCGACTGCTCCAAGAATCAGGAAACGGCTTTGTCCGCCACAACGTGGGGCACC
TGAGCAGAATCTACCCGGCTGGATGGAGAACAGACTCCTCCAACTACAGCCCCGTGGAGATGTG
GAATGGGGGCTGCCAGATTGTGGCCCTGAATTTCCAGACACCTGGGCCAGAGATGGACGTGTAC
CAGGGCCGCTTCCAGGACAACGGGGCCTGTGGGTACGTGCTGAAGCCCGCCTTCCTGCGAGACC
CCAACGGCACCTTTAACCCCCGCGCCCTGGCTCAGGGGCCCTGGTGGGCACGGAAGCGGCTCAA
CATCAGGGTCATTTCGGGGCAGCAGCTGCCAAAAGTCAACAAGAATAAGAATTCAATTGTGGAC
CCCAAAGTGACAGTGGAGATCCATGGTGTGAGCCGGGACGTGGCCAGCCGCCAGACTGCTGTCA
TCACCAACAATGGTTTCAACCCATGGTGGGACACGGAGTTTGCGTTTGAGGTAGTTGTGCCTGA
CCTTGCCCTCGTCCGCTTCTTGGTGGAAGATTATGATGCCTCCTCCAAGAATGACTTCATTGGC
CAGAGTACCATCCCCTTGAACAGCCTCAAGCAAGGATACCGCCATGTCCACCTCATGTCTAAGA
ACGGGGACCAGCATCCATCAGCCACCCTCTTTGTGAAGATCTCCCTCCAGGACTAGGCTGGAGG
AAGCCAGTGGGGTCCCCCCTGAGTGGGCTGGGCCTTCTGTCCACATGTGGGGACAGGGCTGGTG
TGGCTGCTCCCAGCCTCTTGCTCAGAGCTAGGCCCCCAAACTGCCTTCAGCTCTAACATAGTGT
CTGCTGCTGCCTCCCTGGGGACCAGGAGCTAGCCCAGTCCCTGGAGCTGTCCTTCATTCCGTTA
GGAATAACACTGCAGCCCTCTCCACCCTCCGGCCAGCGAGTGGTCAAGGGTTTTTATAAAAATC
ATGATAAGATTAA

hide sequence

RefSeq Acc Id:

XM_003826106 ⟹ XP_003826154

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	37,961,770 - 37,979,316 (-)	NCBI
NHGRI_mPanPan1	3	37,966,534 - 37,984,002 (-)	NCBI
Mhudiblu_PPA_v0	3	37,906,359 - 37,923,696 (-)	NCBI
PanPan1.1	3	38,189,496 - 38,206,886 (-)	NCBI

Sequence:

show sequence

GTTAGTCCCACCCCTCTTGGATGGCCCAGCCTTTTGGGGTCTGACTCTGCCCTCCTTAGCCCAG
ATTTTCTTCTCGTCCCGCCTCCTGTATTCTGACTCCCCCCACTCATTTACTTTGCCTCGGTTTC
GCTCTCGCCTCACCTTCAGGGGGCATAGGTCCCGCCGCTCGTGGACTAGCTCCGCCTCCTAGCG
TCTGACTACCCCCTCAGCCCAGATTTCCCTCTCGTCCCGCCCCTCCGAAGTGCGCCCCTCCTCT
CGAACTCTAGCTCCTCCCTCCCATTCCTGGACTCCGCCCCTGCACCCCTCCAAGGGCGACAGTT
CCGCCCCCCGGACCAGAGCAGTGGGTGTTGTGAGCATAAAACACTGGAGGCGGCACTGTCCCGG
ACCCGGCTCCGCGCAGGCAGGGGCACTGTGGAGGGCCATGCAGTGCCTGGGGATCCGGATCCGG
AGCCGGAGCCGGAGCCGCTCCAGGGAGCTCTACCTGCAGGAGCAGAGCCTTAAGGTGGCGGCAC
TCAATGGACGGAGGCTGGGCCTACAGGATGATGAGGATCTACAGGCGCTGCTGAAGGGCAGCCA
GCTCCTGAAGGTGAAGTCCAGCTCATGGAGGAGAGAGCGCTTCTACAAGTTGCAGGAGGACTGC
AAGACCATCTGGCAGGAGTCCCGCAAGGTCATGCGGACCCCGGAGTCCCAGCTGTTCTCCATCG
AGGACATTCAGGAGGTGCGAATGGGGCACCGCACGGAGGGTCTGGAGAAGTTCGCCCGTGATGT
GCCCGAGGACCGCTGCTTCTCCATTGTCTTCAAGGACCAGCGCAATACACTAGACCTCATCGCC
CCATCGCCAGCTGATGCCCAGCACTGGGTGCTGGGGCTGCACAAGATCATCCACCACTCAGGCT
CCATGGACCAGCGTCAGAAGCTACAGCACTGGATTCACTCCTGCTTGCGAAAAGCTGACAAAAA
CAAGGACAACAAGATGAGCTTCAAGGAGCTGCAGAACTTCCTGAAGGAGCTCAACATCCAGGTG
GACGACAGCTATGCCCGGAAGATCTTCAGGGAGTGTGACCACTCCCAGACAGACTCCCTGGAGG
ACGAGGAGATTGAGGCCTTCTACAAGATGCTGACCCAGCGGGTGGAGATCGACCGCACCTTCGC
CGAGGCCGTGGGCTCAGGGGAGACTCTGTCGGTGGATCAGTTAGTGACGTTCCTGCAGCACCAG
CAGCGGGAGGAGGCGGCAGGGCCTGCGCTGGCCCTCTCCCTCATTGAGCGCTACGAGCCCAGCG
AGACTGCCAAGGCGCAGCGGCAGATGACCAAGGACGGCTTCCTCATGTACTTACTGTCGGCTGA
CGGCAGCGCCTTCAGCCTGGCACACCGCCGTGTCTACCAGGACATGGGCCAGCCGCTTAGCCAC
TACCTGGTGTCCTCTTCACACAACACCTACCTGCTGGAGGACCAGCTAGCCGGGCCCAGCAGCA
CTGAAGCCTACATCCGGGCACTGTGCAAAGGCTGCCGATGCCTGGAGCTTGACTGCTGGGACGG
GCCCAACCAGGAACCAATCATCTACCACGGCTATACTTTCACTTCCAAGATCCTCTTCTGCGAT
GTGATCAGGGCCATCCGGGACTATGCCTTCAAGGCGTCCCCCTACCCTGTCATCCTATCCCTGG
AGAACCACTGCACACTGGAGCAGCAGCGCGTGATGGCGCGGCACCTGCACGCCATCCTGGGCCC
CATGCTGTTGAACCGACCACTGGATGGGGTCACCAACAGCCTGCCCTCCCCTGAGCAACTGAAG
GGGAAGATCCTGCTGAAGGGGAAGAAGCTCGGGGGGCTCCTGCCCCCTGCAGGGGAGGGTGGCC
CTGAGGCCACTGTGGTGTCAGACGAAGACGAGGCTGCTGAGATGGAGGATGAGGCAGTGAGGAG
CCGTGTGCAGCACAAGCCCAAGGAGGACAAGCTCAGGCTAGCACAGGAGCTCTCTGACATGGTC
ATTTACTGCAAGAGTGTCCACTTTGGGGGCTTCTCCAGTCCTGGCACCCCTGGACAGGCCTTCT
ACGAGATGGCGTCCTTCTCTGAGAACCGTGCCCTTCGACTGCTCCAAGAATCAGGAAACGGCTT
TGTCCGCCACAACGTGGGGCACCTGAGCAGAATCTACCCGGCTGGATGGAGAACAGACTCCTCC
AACTACAGCCCCGTGGAGATGTGGAATGGGGGCTGCCAGATTGTGGCCCTGAATTTCCAGACAC
CTGGGCCAGAGATGGACGTGTACCAGGGCCGCTTCCAGGACAACGGGGCCTGTGGGTACGTGCT
GAAGCCCGCCTTCCTGCGAGACCCCAACGGCACCTTTAACCCCCGCGCCCTGGCTCAGGGGCCC
TGGTGGGCACGGAAGCGGCTCAACATCAGGGTCATTTCGGGGCAGCAGCTGCCAAAAGTCAACA
AGAATAAGAATTCAATTGTGGACCCCAAAGTGACAGTGGAGATCCATGGTGTGAGCCGGGACGT
GGCCAGCCGCCAGACTGCTGTCATCACCAACAATGGTTTCAACCCATGGTGGGACACGGAGTTT
GCGTTTGAGGTAGTTGTGCCTGACCTTGCCCTCGTCCGCTTCTTGGTGGAAGATTATGATGCCT
CCTCCAAGAATGACTTCATTGGCCAGAGTACCATCCCCTTGAACAGCCTCAAGCAAGGATACCG
CCATGTCCACCTCATGTCTAAGAACGGGGACCAGCATCCATCAGCCACCCTCTTTGTGAAGATC
TCCCTCCAGGACTAGGCTGGAGGAAGCCAGTGGGGTCCCCCCTGAGTGGGCTGGGCCTTCTGTC
CACATGTGGGGACAGGGCTGGTGTGGCTGCTCCCAGCCTCTTGCTCAGAGCTAGGCCCCCAAAC
TGCCTTCAGCTCTAACATAGTGTCTGCTGCTGCCTCCCTGGGGACCAGGAGCTAGCCCAGTCCC
TGGAGCTGTCCTTCATTCCGTTAGGAATAACACTGCAGCCCTCTCCACCCTCCGGCCAGCGAGT
GGTCAAGGGTTTTTATAAAAATCATGATAAGATTAA

hide sequence

RefSeq Acc Id:

XM_063602260 ⟹ XP_063458330

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	37,961,770 - 37,979,206 (-)	NCBI

RefSeq Acc Id:

XM_063602261 ⟹ XP_063458331

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	2	37,961,770 - 37,983,974 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_003826153	(Get FASTA)	NCBI Sequence Viewer
	XP_003826154	(Get FASTA)	NCBI Sequence Viewer
	XP_063458330	(Get FASTA)	NCBI Sequence Viewer
	XP_063458331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000007461.1
	ENSPPAP00000007465.1
	ENSPPAP00000007466.1
	ENSPPAP00000007467.1

RefSeq Acc Id:	XP_003826153 ⟸ XM_003826105
- Peptide Label:	isoform X2
- UniProtKB:	A0A2R8ZX12 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSGRDFLTLHGLQDDEDLQALLKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRTPES QLFSIEDIQEVRMGHRTEGLEKFARDVPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVLGLHKI IHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMSFKELQNFLKELNIQVDDSYARKIFRECDHSQ TDSLEDEEIEAFYKMLTQRVEIDRTFAEAVGSGETLSVDQLVTFLQHQQREEAAGPALALSLIE RYEPSETAKAQRQMTKDGFLMYLLSADGSAFSLAHRRVYQDMGQPLSHYLVSSSHNTYLLEDQL AGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYTFTSKILFCDVIRAIRDYAFKASPYP VILSLENHCTLEQQRVMARHLHAILGPMLLNRPLDGVTNSLPSPEQLKGKILLKGKKLGGLLPP AGEGGPEATVVSDEDEAAEMEDEAVRSRVQHKPKEDKLRLAQELSDMVIYCKSVHFGGFSSPGT PGQAFYEMASFSENRALRLLQESGNGFVRHNVGHLSRIYPAGWRTDSSNYSPVEMWNGGCQIVA LNFQTPGPEMDVYQGRFQDNGACGYVLKPAFLRDPNGTFNPRALAQGPWWARKRLNIRVISGQQ LPKVNKNKNSIVDPKVTVEIHGVSRDVASRQTAVITNNGFNPWWDTEFAFEVVVPDLALVRFLV EDYDASSKNDFIGQSTIPLNSLKQGYRHVHLMSKNGDQHPSATLFVKISLQD hide sequence

RefSeq Acc Id:	XP_003826154 ⟸ XM_003826106
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZR69 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQCLGIRIRSRSRSRSRELYLQEQSLKVAALNGRRLGLQDDEDLQALLKGSQLLKVKSSSWRRE RFYKLQEDCKTIWQESRKVMRTPESQLFSIEDIQEVRMGHRTEGLEKFARDVPEDRCFSIVFKD QRNTLDLIAPSPADAQHWVLGLHKIIHHSGSMDQRQKLQHWIHSCLRKADKNKDNKMSFKELQN FLKELNIQVDDSYARKIFRECDHSQTDSLEDEEIEAFYKMLTQRVEIDRTFAEAVGSGETLSVD QLVTFLQHQQREEAAGPALALSLIERYEPSETAKAQRQMTKDGFLMYLLSADGSAFSLAHRRVY QDMGQPLSHYLVSSSHNTYLLEDQLAGPSSTEAYIRALCKGCRCLELDCWDGPNQEPIIYHGYT FTSKILFCDVIRAIRDYAFKASPYPVILSLENHCTLEQQRVMARHLHAILGPMLLNRPLDGVTN SLPSPEQLKGKILLKGKKLGGLLPPAGEGGPEATVVSDEDEAAEMEDEAVRSRVQHKPKEDKLR LAQELSDMVIYCKSVHFGGFSSPGTPGQAFYEMASFSENRALRLLQESGNGFVRHNVGHLSRIY PAGWRTDSSNYSPVEMWNGGCQIVALNFQTPGPEMDVYQGRFQDNGACGYVLKPAFLRDPNGTF NPRALAQGPWWARKRLNIRVISGQQLPKVNKNKNSIVDPKVTVEIHGVSRDVASRQTAVITNNG FNPWWDTEFAFEVVVPDLALVRFLVEDYDASSKNDFIGQSTIPLNSLKQGYRHVHLMSKNGDQH PSATLFVKISLQD hide sequence

RefSeq Acc Id:

ENSPPAP00000007461 ⟸ ENSPPAT00000029844

RefSeq Acc Id:

ENSPPAP00000007466 ⟸ ENSPPAT00000029851

RefSeq Acc Id:

ENSPPAP00000007467 ⟸ ENSPPAT00000029852

RefSeq Acc Id:

ENSPPAP00000007465 ⟸ ENSPPAT00000029850

RefSeq Acc Id:	XP_063458331 ⟸ XM_063602261
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063458330 ⟸ XM_063602260
- Peptide Label:	isoform X3

Protein Domains

C2 EF-hand PH PI-PLC Y-box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000026688	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000029844.1	UniProtKB/TrEMBL
	ENSPPAT00000029850.1	UniProtKB/TrEMBL
	ENSPPAT00000029851.1	UniProtKB/TrEMBL
	ENSPPAT00000029852.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.29.30	UniProtKB/TrEMBL
	2.60.40.150	UniProtKB/TrEMBL
	3.20.20.190	UniProtKB/TrEMBL
	EF-hand	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/TrEMBL
	PH-like_dom_sf	UniProtKB/TrEMBL
	PH_domain	UniProtKB/TrEMBL
	PI-PLC_fam	UniProtKB/TrEMBL
	PLC-delta1	UniProtKB/TrEMBL
	PLC-delta1_EF	UniProtKB/TrEMBL
	PLC-like_Pdiesterase_TIM-brl	UniProtKB/TrEMBL
	PLC_EF-hand-like	UniProtKB/TrEMBL
	PLipase_C_PInositol-sp_X_dom	UniProtKB/TrEMBL
	PLipase_C_Pinositol-sp_Y	UniProtKB/TrEMBL
NCBI Gene	PLCD1	ENTREZGENE
PANTHER	PTHR10336	UniProtKB/TrEMBL
	PTHR10336:SF80	UniProtKB/TrEMBL
Pfam	EF-hand_like	UniProtKB/TrEMBL
	PF00168	UniProtKB/TrEMBL
	PH_12	UniProtKB/TrEMBL
	PI-PLC-X	UniProtKB/TrEMBL
	PI-PLC-Y	UniProtKB/TrEMBL
PRINTS	PHPHLIPASEC	UniProtKB/TrEMBL
PROSITE	EF_HAND_1	UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/TrEMBL
	PH_DOMAIN	UniProtKB/TrEMBL
	PIPLC_X_DOMAIN	UniProtKB/TrEMBL
	PIPLC_Y_DOMAIN	UniProtKB/TrEMBL
	PS50004	UniProtKB/TrEMBL
SMART	EFh	UniProtKB/TrEMBL
	PLCXc	UniProtKB/TrEMBL
	PLCYc	UniProtKB/TrEMBL
	SM00233	UniProtKB/TrEMBL
	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	PH domain-like	UniProtKB/TrEMBL
	SSF47473	UniProtKB/TrEMBL
	SSF49562	UniProtKB/TrEMBL
	SSF51695	UniProtKB/TrEMBL
UniProt	A0A2R8ZR69	ENTREZGENE, UniProtKB/TrEMBL
	A0A2R8ZR73_PANPA	UniProtKB/TrEMBL
	A0A2R8ZR74_PANPA	UniProtKB/TrEMBL
	A0A2R8ZX12	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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