Psmd14 (proteasome 26S subunit, non-ATPase 14) - Rat Genome Database

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Gene: Psmd14 (proteasome 26S subunit, non-ATPase 14) Chinchilla lanigera
Analyze
Symbol: Psmd14
Name: proteasome 26S subunit, non-ATPase 14
RGD ID: 8996746
Description: ENCODES a protein that exhibits endopeptidase activator activity (ortholog); metal-dependent deubiquitinase activity (ortholog); proteasome binding (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); double-strand break repair via nonhomologous end joining (ortholog); protein K63-linked deubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Alcoholic Liver Diseases (ortholog); autistic disorder (ortholog); Disease Progression (ortholog); FOUND IN cytosolic proteasome complex (ortholog); proteasome accessory complex (ortholog); proteasome complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 26S proteasome non-ATPase regulatory subunit 14; proteasome (prosome, macropain) 26S subunit, non-ATPase, 14
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544912,306,026 - 12,400,908 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Psmd14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495544912,306,026 - 12,400,908 (-)NCBIChiLan1.0ChiLan1.0
PSMD14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382161,308,425 - 161,411,717 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2161,308,425 - 161,411,717 (+)EnsemblGRCh38hg38GRCh38
GRCh372162,164,936 - 162,268,228 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362161,873,186 - 161,976,172 (+)NCBINCBI36Build 36hg18NCBI36
Build 342161,990,446 - 162,093,433NCBI
Celera2155,776,557 - 155,880,315 (+)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2154,049,213 - 154,152,684 (+)NCBIHuRef
CHM1_12162,170,938 - 162,274,393 (+)NCBICHM1_1
T2T-CHM13v2.02161,766,719 - 161,870,044 (+)NCBIT2T-CHM13v2.0
Psmd14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39261,542,038 - 61,630,720 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl261,542,038 - 61,630,720 (+)EnsemblGRCm39 Ensembl
GRCm38261,711,694 - 61,800,376 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl261,711,694 - 61,800,376 (+)EnsemblGRCm38mm10GRCm38
MGSCv37261,549,751 - 61,638,433 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36261,512,608 - 61,601,215 (+)NCBIMGSCv36mm8
Celera263,413,313 - 63,502,325 (+)NCBICelera
Cytogenetic Map2C1.3NCBI
cM Map235.56NCBI
Psmd14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8366,662,933 - 66,755,666 (+)NCBIGRCr8
mRatBN7.2346,254,338 - 46,347,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl346,254,330 - 46,347,076 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx349,600,021 - 49,692,757 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0358,183,542 - 58,276,273 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0355,966,122 - 56,058,875 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0347,578,449 - 47,673,330 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl347,578,384 - 47,673,338 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0354,249,938 - 54,344,886 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4343,660,136 - 43,699,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera345,922,238 - 46,014,721 (+)NCBICelera
Cytogenetic Map3q21NCBI
PSMD14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21363,997,127 - 64,103,767 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B64,014,080 - 64,118,739 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B48,602,395 - 48,705,229 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B165,972,229 - 166,074,879 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B165,972,229 - 166,074,879 (+)Ensemblpanpan1.1panPan2
PSMD14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1366,883,612 - 6,985,291 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl366,889,622 - 6,984,974 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,019,712 - 7,122,412 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0367,006,841 - 7,109,577 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl367,006,840 - 7,117,492 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1367,023,304 - 7,125,998 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0367,067,598 - 7,170,265 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0367,175,451 - 7,278,173 (+)NCBIUU_Cfam_GSD_1.0
Psmd14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303124,016,680 - 124,123,583 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646917,494,134 - 17,601,045 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646917,494,137 - 17,601,045 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSMD14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1568,162,532 - 68,208,883 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11568,107,379 - 68,208,884 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21575,585,422 - 75,707,658 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PSMD14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11046,703,876 - 46,814,938 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1046,704,098 - 46,815,132 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040152,727,806 - 152,837,708 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psmd14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247324,057,810 - 4,150,209 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247324,057,519 - 4,150,178 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005393338   ⟹   XP_005393395
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544912,306,026 - 12,400,902 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005393340   ⟹   XP_005393397
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544912,306,026 - 12,400,908 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005393395 (Get FASTA)   NCBI Sequence Viewer  
  XP_005393397 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000014899
  ENSCLAP00000014899.1
Reference Protein Sequences
RefSeq Acc Id: XP_005393397   ⟸   XM_005393340
- UniProtKB: A0A8C2VM96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005393395   ⟸   XM_005393338
- UniProtKB: A0A8C2VM96 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
MPN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010278 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015058 ENTREZGENE
  ENSCLAT00000015058.1 UniProtKB/TrEMBL
Gene3D-CATH Cytidine Deaminase, domain 2 UniProtKB/TrEMBL
InterPro JAMM/MPN+_dom UniProtKB/TrEMBL
  MPN UniProtKB/TrEMBL
NCBI Gene Psmd14 ENTREZGENE
PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED UniProtKB/TrEMBL
Pfam JAB UniProtKB/TrEMBL
PROSITE MPN UniProtKB/TrEMBL
SMART JAB_MPN UniProtKB/TrEMBL
Superfamily-SCOP JAB1/MPN domain UniProtKB/TrEMBL
UniProt A0A8C2VM96 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Psmd14  proteasome 26S subunit, non-ATPase 14    proteasome (prosome, macropain) 26S subunit, non-ATPase, 14  Symbol and/or name change 5135510 APPROVED