Vdac3 (voltage dependent anion channel 3) - Rat Genome Database

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Gene: Vdac3 (voltage dependent anion channel 3) Chinchilla lanigera
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Symbol: Vdac3
Name: voltage dependent anion channel 3
RGD ID: 8977484
Description: INVOLVED IN behavioral fear response (ortholog); chemical synaptic transmission (ortholog); learning (ortholog); ASSOCIATED WITH IMMUNODEFICIENCY 15 (ortholog); immunodeficiency 15B (ortholog); torsion dystonia 6 (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: voltage-dependent anion channel 3; voltage-dependent anion-selective channel protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955536505,901 - 520,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955536507,393 - 520,399 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vdac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955536505,901 - 520,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955536507,393 - 520,399 (-)NCBIChiLan1.0ChiLan1.0
VDAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38842,391,880 - 42,405,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl842,391,624 - 42,405,937 (+)EnsemblGRCh38hg38GRCh38
GRCh37842,249,279 - 42,263,455 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,368,547 - 42,382,572 (+)NCBINCBI36Build 36hg18NCBI36
Build 34842,368,546 - 42,382,570NCBI
Celera841,194,068 - 41,208,137 (+)NCBICelera
Cytogenetic Map8p11.21NCBI
HuRef840,772,505 - 40,786,681 (+)NCBIHuRef
CHM1_1842,296,186 - 42,310,362 (+)NCBICHM1_1
T2T-CHM13v2.0842,662,194 - 42,676,251 (+)NCBIT2T-CHM13v2.0
Vdac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39823,067,091 - 23,083,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl823,067,102 - 23,083,774 (-)EnsemblGRCm39 Ensembl
GRCm38822,577,075 - 22,593,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,577,075 - 22,593,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37823,687,573 - 23,704,230 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36824,042,646 - 24,059,303 (-)NCBIMGSCv36mm8
Celera824,067,622 - 24,083,995 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.42NCBI
Vdac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,137,489 - 76,153,933 (+)NCBIGRCr8
mRatBN7.21669,434,982 - 69,451,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,435,005 - 69,451,471 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1674,708,731 - 74,725,175 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,140,283 - 78,156,488 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,389,472 - 73,405,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,292,466 - 74,308,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,292,438 - 74,308,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01673,924,404 - 73,940,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41673,922,950 - 73,939,402 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11673,923,214 - 73,939,665 (+)NCBI
Celera1667,328,312 - 67,344,563 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
VDAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2760,846,558 - 60,860,841 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1836,563,512 - 36,577,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0841,638,522 - 41,652,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1839,082,698 - 39,097,442 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,082,698 - 39,097,437 (+)Ensemblpanpan1.1panPan2
VDAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11623,276,763 - 23,289,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1623,276,767 - 23,289,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,781,395 - 23,794,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01625,025,439 - 25,038,433 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1625,025,304 - 25,038,420 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11623,396,625 - 23,409,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01623,959,525 - 23,972,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01624,010,292 - 24,023,302 (-)NCBIUU_Cfam_GSD_1.0
Vdac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494346,338,494 - 46,351,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936785291,341 - 308,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936785294,890 - 308,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VDAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,410,472 - 11,425,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,410,313 - 11,425,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21713,028,544 - 13,050,347 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VDAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,388,485 - 40,402,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl840,388,423 - 40,403,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660521,381,718 - 1,396,242 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vdac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624780857,686 - 869,952 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624780857,985 - 870,009 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000001172   ⟹   ENSCLAP00000001131
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955536505,901 - 520,399 (-)Ensembl
RefSeq Acc Id: XM_005410506   ⟹   XP_005410563
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955536507,393 - 520,399 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005410508   ⟹   XP_005410565
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955536507,393 - 520,398 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507733   ⟹   XP_013363187
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955536507,393 - 519,705 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410563 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410565 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363187 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001131
  ENSCLAP00000001131.1
RefSeq Acc Id: XP_005410563   ⟸   XM_005410506
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UNP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005410565   ⟸   XM_005410508
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UNP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013363187   ⟸   XM_013507733
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UNP7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001131   ⟸   ENSCLAT00000001172


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000866 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001172 ENTREZGENE
  ENSCLAT00000001172.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.160.10 UniProtKB/TrEMBL
InterPro Porin_dom_sf UniProtKB/TrEMBL
  Porin_Euk UniProtKB/TrEMBL
  Porin_Euk/Tom40 UniProtKB/TrEMBL
NCBI Gene Vdac3 ENTREZGENE
PANTHER PTHR11743 UniProtKB/TrEMBL
  PTHR11743:SF28 UniProtKB/TrEMBL
Pfam Porin_3 UniProtKB/TrEMBL
PRINTS EUKARYTPORIN UniProtKB/TrEMBL
PROSITE EUKARYOTIC_PORIN UniProtKB/TrEMBL
UniProt A0A8C2UNP7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Vdac3  voltage dependent anion channel 3    voltage-dependent anion channel 3  Symbol and/or name change 5135510 APPROVED