Vdac3 (voltage dependent anion channel 3) - Rat Genome Database

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Gene: Vdac3 (voltage dependent anion channel 3) Heterocephalus glaber
Analyze
Symbol: Vdac3
Name: voltage dependent anion channel 3
RGD ID: 18919546
Description: ENCODES a protein that exhibits porin activity (inferred); voltage-gated monoatomic anion channel activity (inferred); INVOLVED IN behavioral fear response (ortholog); chemical synaptic transmission (ortholog); learning (ortholog); ASSOCIATED WITH IMMUNODEFICIENCY 15 (ortholog); immunodeficiency 15B (ortholog); torsion dystonia 6 (ortholog); FOUND IN synaptic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Voltage-dependent anion-selective channel protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624780857,686 - 869,952 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624780857,985 - 870,009 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Vdac3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624780857,686 - 869,952 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624780857,985 - 870,009 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
VDAC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38842,391,880 - 42,405,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl842,391,624 - 42,405,937 (+)EnsemblGRCh38hg38GRCh38
GRCh37842,249,279 - 42,263,455 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36842,368,547 - 42,382,572 (+)NCBINCBI36Build 36hg18NCBI36
Build 34842,368,546 - 42,382,570NCBI
Celera841,194,068 - 41,208,137 (+)NCBICelera
Cytogenetic Map8p11.21NCBI
HuRef840,772,505 - 40,786,681 (+)NCBIHuRef
CHM1_1842,296,186 - 42,310,362 (+)NCBICHM1_1
T2T-CHM13v2.0842,662,194 - 42,676,251 (+)NCBIT2T-CHM13v2.0
Vdac3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39823,067,091 - 23,083,829 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl823,067,102 - 23,083,774 (-)EnsemblGRCm39 Ensembl
GRCm38822,577,075 - 22,593,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl822,577,075 - 22,593,813 (-)EnsemblGRCm38mm10GRCm38
MGSCv37823,687,573 - 23,704,230 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36824,042,646 - 24,059,303 (-)NCBIMGSCv36mm8
Celera824,067,622 - 24,083,995 (-)NCBICelera
Cytogenetic Map8A2NCBI
cM Map811.42NCBI
Vdac3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81676,137,489 - 76,153,933 (+)NCBIGRCr8
mRatBN7.21669,434,982 - 69,451,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1669,435,005 - 69,451,471 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1674,708,731 - 74,725,175 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01678,140,283 - 78,156,488 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01673,389,472 - 73,405,674 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01674,292,466 - 74,308,910 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1674,292,438 - 74,308,903 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01673,924,404 - 73,940,565 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41673,922,950 - 73,939,402 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11673,923,214 - 73,939,665 (+)NCBI
Celera1667,328,312 - 67,344,563 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Vdac3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955536505,901 - 520,399 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955536507,393 - 520,399 (-)NCBIChiLan1.0ChiLan1.0
VDAC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2760,846,558 - 60,860,841 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1836,563,512 - 36,577,795 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0841,638,522 - 41,652,637 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1839,082,698 - 39,097,442 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl839,082,698 - 39,097,437 (+)Ensemblpanpan1.1panPan2
VDAC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11623,276,763 - 23,289,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1623,276,767 - 23,289,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1623,781,395 - 23,794,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01625,025,439 - 25,038,433 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1625,025,304 - 25,038,420 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11623,396,625 - 23,409,605 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01623,959,525 - 23,972,507 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01624,010,292 - 24,023,302 (-)NCBIUU_Cfam_GSD_1.0
Vdac3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494346,338,494 - 46,351,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936785291,341 - 308,241 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936785294,890 - 308,245 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VDAC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1711,410,472 - 11,425,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11711,410,313 - 11,425,395 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21713,028,544 - 13,050,347 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VDAC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1840,388,485 - 40,402,637 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl840,388,423 - 40,403,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660521,381,718 - 1,396,242 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000026565   ⟹   ENSHGLP00000026330
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624780857,686 - 869,952 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000026566   ⟹   ENSHGLP00000026331
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_004624780857,686 - 868,947 (-)Ensembl
RefSeq Acc Id: XM_004855276   ⟹   XP_004855333
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 870,009 (-)NCBI
RefSeq Acc Id: XM_004855277   ⟹   XP_004855334
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,373 (-)NCBI
RefSeq Acc Id: XM_004855278   ⟹   XP_004855335
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 870,007 (-)NCBI
RefSeq Acc Id: XM_021236742   ⟹   XP_021092401
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,830 (-)NCBI
RefSeq Acc Id: XM_021236743   ⟹   XP_021092402
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,823 (-)NCBI
RefSeq Acc Id: XM_021236744   ⟹   XP_021092403
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,365 (-)NCBI
RefSeq Acc Id: XM_021236745   ⟹   XP_021092404
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,373 (-)NCBI
RefSeq Acc Id: XM_021236746   ⟹   XP_021092405
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_004624780857,985 - 869,358 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_004855333   ⟸   XM_004855276
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004855335   ⟸   XM_004855278
- Peptide Label: isoform X4
- UniProtKB: G5BT43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092401   ⟸   XM_021236742
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092402   ⟸   XM_021236743
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092404   ⟸   XM_021236745
- Peptide Label: isoform X4
- UniProtKB: G5BT43 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855334   ⟸   XM_004855277
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021092403   ⟸   XM_021236744
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021092405   ⟸   XM_021236746
- Peptide Label: isoform X4
- UniProtKB: G5BT43 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000026330   ⟸   ENSHGLT00000026565
RefSeq Acc Id: ENSHGLP00000026331   ⟸   ENSHGLT00000026566


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000018734 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000026565 ENTREZGENE
  ENSHGLT00000026566 ENTREZGENE
Gene3D-CATH 2.40.160.10 UniProtKB/TrEMBL
InterPro Porin_dom_sf UniProtKB/TrEMBL
  Porin_Euk UniProtKB/TrEMBL
  Porin_Euk/Tom40 UniProtKB/TrEMBL
NCBI Gene Vdac3 ENTREZGENE
PANTHER PTHR11743 UniProtKB/TrEMBL
  PTHR11743:SF28 UniProtKB/TrEMBL
Pfam Porin_3 UniProtKB/TrEMBL
PRINTS EUKARYTPORIN UniProtKB/TrEMBL
PROSITE EUKARYOTIC_PORIN UniProtKB/TrEMBL
UniProt G5BT43 ENTREZGENE, UniProtKB/TrEMBL