Acot8 (acyl-CoA thioesterase 8) - Rat Genome Database

Name: Acot8
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Acot8 (acyl-CoA thioesterase 8) Chinchilla lanigera

Analyze

Symbol:

Acot8

Name:

acyl-CoA thioesterase 8

RGD ID:

8966323

Description:

ENCODES a protein that exhibits choloyl-CoA hydrolase activity (ortholog); fatty acyl-CoA hydrolase activity (ortholog); long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); dicarboxylic acid catabolic process (ortholog); negative regulation of CD4 production (ortholog); ASSOCIATED WITH focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN peroxisomal matrix (ortholog); peroxisome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

acyl-coenzyme A thioesterase 8

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ACOT8 (acyl-CoA thioesterase 8)	NCBI	Ortholog
Mus musculus (house mouse):	Acot8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Acot8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ACOT8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ACOT8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Acot8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ACOT8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ACOT8 (acyl-CoA thioesterase 8)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,434,082 - 11,454,806 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,434,649 - 11,454,806 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

focal epilepsy (ISO)

T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acyl-CoA metabolic process (ISO)

dicarboxylic acid catabolic process (ISO)

negative regulation of CD4 production (ISO)

peroxisome fission (ISO)

Cellular Component

peroxisomal matrix (ISO)

peroxisome (ISO)

Molecular Function

choloyl-CoA hydrolase activity (ISO)

fatty acyl-CoA hydrolase activity (ISO)

long-chain fatty acyl-CoA hydrolase activity (ISO)

medium-chain fatty acyl-CoA hydrolase activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Acot8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955445	11,434,082 - 11,454,806 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955445	11,434,649 - 11,454,806 (+)	NCBI	ChiLan1.0	ChiLan1.0

ACOT8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	45,841,721 - 45,857,392 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	45,841,721 - 45,857,405 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	44,470,360 - 44,486,031 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	43,903,768 - 43,919,442 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	43,903,767 - 43,919,442	NCBI
Celera	20	41,180,856 - 41,196,530 (-)	NCBI		Celera
Cytogenetic Map	20	q13.12	NCBI
HuRef	20	41,212,129 - 41,227,770 (-)	NCBI		HuRef
CHM1_1	20	44,373,492 - 44,389,180 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	47,578,222 - 47,593,911 (-)	NCBI		T2T-CHM13v2.0

Acot8
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	164,634,688 - 164,662,132 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	164,634,685 - 164,646,802 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	164,792,768 - 164,820,219 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	164,792,765 - 164,804,882 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	164,618,268 - 164,630,381 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	164,483,973 - 164,496,077 (-)	NCBI		MGSCv36	mm8
Celera	2	170,730,175 - 170,742,288 (-)	NCBI		Celera
Cytogenetic Map	2	H3	NCBI
cM Map	2	85.27	NCBI

Acot8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	173,950,530 - 173,962,188 (-)	NCBI		GRCr8
mRatBN7.2	3	153,531,192 - 153,542,851 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	153,531,193 - 153,542,851 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	157,339,669 - 157,351,337 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	165,838,639 - 165,850,307 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	163,582,412 - 163,594,081 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	161,260,837 - 161,272,495 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	161,259,735 - 161,272,460 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	167,446,048 - 167,457,779 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	155,828,209 - 155,839,862 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	155,734,245 - 155,745,898 (-)	NCBI
Celera	3	152,138,819 - 152,150,462 (-)	NCBI		Celera
Cytogenetic Map	3	q42	NCBI

ACOT8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	51,583,277 - 51,599,011 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	51,576,385 - 51,592,109 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	42,180,734 - 42,196,466 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	43,268,264 - 43,283,989 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	43,268,264 - 43,283,989 (-)	Ensembl	panpan1.1		panPan2

ACOT8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	33,149,415 - 33,163,086 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	33,128,290 - 33,163,050 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	32,676,438 - 32,690,112 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	33,859,698 - 33,873,388 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	33,859,700 - 33,873,380 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	33,118,251 - 33,131,923 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	33,233,332 - 33,246,997 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	33,772,459 - 33,786,134 (-)	NCBI		UU_Cfam_GSD_1.0

Acot8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	191,713,172 - 191,726,893 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	7,166,818 - 7,180,537 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	7,166,392 - 7,180,537 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ACOT8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	48,039,628 - 48,054,335 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	48,039,627 - 48,054,335 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	53,685,696 - 53,700,414 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ACOT8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	18,026,927 - 18,043,940 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	18,027,016 - 18,043,823 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	66,666,666 - 66,683,894 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005392408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01039693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01039694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01039695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01050826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000012274 ⟹ ENSCLAP00000012133

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955445	11,434,082 - 11,454,806 (+)	Ensembl

RefSeq Acc Id:

XM_005392408 ⟹ XP_005392465

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955445	11,434,649 - 11,454,806 (+)	NCBI

Sequence:

show sequence

CGTCCTCAGCGGACTTCCGGTTACTAGGGCAATCTCCCGGAAGCGCCGGGGTCCTGGGCAGGTC
TCCGCGTGTTCTGCCGGGGAGCCGGAACTGAGTGAACAAGATGTCGATGCTTCAGGCTCCGGAG
GATGGGAAGGGCGGCGGCGACCGCGACGATCCCTCCCGGGACCTCCGTAGCGTTCTGGTCACCA
GCGTGCTCAGCCTTGAGCCGCTGGACGAGGATCTCTTCAGAGGCAGGCATTACTGGGTACCGAC
CACCCAGCGGCTCTTTGGGGGTCAGATCGTGGGCCAGGCCCTGGTGGCTGCAGCCAAGTCTGTG
AGTGAAGACGTCCACGTGCACTCCCTGCACTGCTACTTCGTCCGGGCAGGGGACCCAAAGGTGC
CAGTGCTATACCGGGTGGAGCGGACGCGAACAGGGGCAAGCTTCTCAGTGCGTTCTGTGAAGGC
CGTGCAACACGGCAAACCCATCTTCATCTTCCAAGCCTCCTTCCAGAAGCGCCAGCCCAGCCCT
GTCCAGCACCAGTTCTCTATGCCCACTGTGCCTCCACCGGAAGAGCTGCTTGACCACGAGGCCC
TCATAGATCAGTATTTAAGGGACCCTAACCTCCAAGAGAAATACCGAGTGGGGCTCAACCGAAT
TGCTGCCCAGGAGGTACCCATTGAGATCAAGCTGGTAAACCCGCCCACCCTGAGTCAGTTTCGG
AGAATGGAACCCAAACAGATGTTCTGGGTGCGGGCCCGGGGCTTTATTGGGGAGGGCGACATCA
AGATGCACTGCTGTGTAGCCGCGTATATCTCCGACTATGCCTTCCTGGGCACGGCGCTGCTGCC
CCACCAGTGGAAGTATAAGGTGCACTTCATGGCCTCGCTGGACCACTCCATGTGGTTTCATGCC
CCCTTCCGAGCTGACCACTGGATGCTCTATGAGTGTGAGAGCCCCTGGGCTGGTGGCTCTCGGG
GGCTGGTGCATGGGCGACTGTGGCGTCAGGACGGGGTGCTGGCTGTATCTTGTGCCCAGGAAGG
TGTAATCCGAGTAAAGCCCCGGGTCTCAGAGAGCAAGCTATAGCCAGAGGTACCAGCTTATCCT
CAGGCGTCAAGGATCTCCCTTCTACGCCATTCCAGAGGCAGGAAATACAGTCAAGGGCTGGGCC
TTTGGCCTTCACATCAATAAAGAGACTGTGATACCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005392465	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000012133
	ENSCLAP00000012133.1

RefSeq Acc Id:

XP_005392465 ⟸ XM_005392408

- UniProtKB:

A0A8C2YNQ8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSMLQAPEDGKGGGDRDDPSRDLRSVLVTSVLSLEPLDEDLFRGRHYWVPTTQRLFGGQIVGQA
LVAAAKSVSEDVHVHSLHCYFVRAGDPKVPVLYRVERTRTGASFSVRSVKAVQHGKPIFIFQAS
FQKRQPSPVQHQFSMPTVPPPEELLDHEALIDQYLRDPNLQEKYRVGLNRIAAQEVPIEIKLVN
PPTLSQFRRMEPKQMFWVRARGFIGEGDIKMHCCVAAYISDYAFLGTALLPHQWKYKVHFMASL
DHSMWFHAPFRADHWMLYECESPWAGGSRGLVHGRLWRQDGVLAVSCAQEGVIRVKPRVSESKL

hide sequence

RefSeq Acc Id:

ENSCLAP00000012133 ⟸ ENSCLAT00000012274

Protein Domains

Acyl-CoA thioesterase II Acyl-CoA thioesterase-like N-terminal HotDog

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000008365	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000012274	ENTREZGENE
	ENSCLAT00000012274.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.160.210	UniProtKB/TrEMBL
InterPro	Acyl-CoA_hotdog	UniProtKB/TrEMBL
	Acyl_CoA_thio	UniProtKB/TrEMBL
	Acyl_CoA_thio_II_dom	UniProtKB/TrEMBL
	HotDog_dom_sf	UniProtKB/TrEMBL
	TesB_ACOT8-like_N	UniProtKB/TrEMBL
NCBI Gene	Acot8	ENTREZGENE
PANTHER	ACYL-COENZYME A THIOESTERASE 8	UniProtKB/TrEMBL
	PTHR11066	UniProtKB/TrEMBL
Pfam	4HBT_3	UniProtKB/TrEMBL
	Acyl_CoA_thio	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54637	UniProtKB/TrEMBL
UniProt	A0A8C2YNQ8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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